LOC110508277 (cld12)


Basic Information

Item Value
gene id LOC110508277
gene name cld12
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6901478 ~ 6905286 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588712.2
GCTTCTGTGAGCTCTAGCGTTTAGCTAGCTAGTCCCATCTTTTCGACAATCCAGGGCGCAACAGGTttctagttaacgttagctgatGCTAActtattattagctagctagtcagCTGGTTAATGATTGCTAACTTGTATTAACATTGTTTGAACAACTGCATGTAGGAGATATCACAGCTAAATTACATATCCACAACTTCACAAGCATACGGGGAGAACAACTAAAAACAGGAAGTCCTGTTGACATCACCTCCTGTCTGCGGCGGCTATGTCGTGCCGGGACATCCACGCCACCAATGCCTTCTCCTTCATCATCGCCTTCATCTCCGTGGGCGGTATCGCTGTGGCGGCGCTGATCCCACAGTGGCGAGTGACACGGCTTGTCACCTTCAACAAAAACGCCAAGAACATCAGCGTCTATGATGGCCTGTGGGCCAAGTGTGTGAAACAAGATGGCTACTctggctgctactactacgactcAGAGTGGTATTCTAAAGTGGACCAGTTGGACCTGAGACTGCTCCAGTTCTGCCTGCCGACTGGGCTACTGTTTGGCTCCCTGGCCCTGGTGCTGTGTATGGCAGGCATGTCTAAGACCTGCTGCTGCTCTGATAAGGCTGAGACAGACATCAAGAGTACCCGCTGTCTGGTCAACAGCGCAGGCTGCCACCTAGTGGCCGGGATGTTCCTGTTCCTGGGCGGTGCTATCGCCCTGGCGCCTTCCGTGTGGTTCCTCTTCCGGACCAAAGAGATGAACATCAAGTACGACCGCATCTTCTCAGACGGGTTCGCGGTCTACGTGGCCATCGGCTGTTCCGGTGGCCTCATGCTCGCCGCCCTGCTGATGTTCATGTGGTACTGCATGTGTAAGAAGCTACCCTCTCCCTTCTGGCTGCCTCTCCCCACACTCCCTAACTCCCTCTCCACCCAGCCCCTCACAGCCAACGGGTACCCCCCCTCCCCTGTCTACGGACCCCCTCAGACCTTCCCTCCACAGGGGTACGTCCCCACTGTGATGGGTGCCCAGCCCTACGCTCCCTCCCAGGGCTACCCTCAGAGCGTAGCTCCactggcccagcagcctcagcAGGTCTGTATGTCCCAGATGTCAGCCCCGGATGGGTATGGGTCAGCTTACAGCTATGCCCCGTCCCAGAGTTATGCCCCCTCTCAGGTGGGCTACGCCCCCAGCTACGTAGGCCACCGCTACTCCACACGCTCACGCATGTCTGGCATAGAGATAGACATCCCTGTTCTAACACAAGacctctgagggagggagggctgctgCAAGAACACTGAGTCCTGGTTCCATTTAGCTGTCCTGTCTCCTGTAAAGGGTGTGTACTGTCAGTGAAGGATATGACTGTTGGTCAGTCTGCACTAGAAATACAACTGTGCGTCACTCAACCAAGCACTGCACTGTTAGACACAGTTTAGTATGCAGGCTCCACATCTGGTGAAAGGACACCAGAGATGCCCCATAATGAAGTCTGAATTCACTGTTACATTTTGATTGAAAACAATATTTTCTAATCACACCGATTTGTACATCTCTTCTTAATGTAAATCTGCTTGAAACCTCATAGCATTTCTACACTGTATAGTTCACTAATATTTCAAAATGAACTAAACTGTAGTCTAACTGTGAGGTAACTTGATGTAGTGAGGTAAAAGGGAGTGACACTAACAGACTGTGATGTCTTTGTtgtgcctgttgttttaatgtgtGTTGTTCATATTGTTGGTCTGTGAAGAAATGTTAATATAATATGCTGTAACATGTGAGATGACATGGGAATGTCCTAATGACTCATCCTATTTACCCATCAACAGTACAGCAGTGGCTCTAAGGACATGACTTTTTATATGTACACATTAATTAGATCATTTTGTATCTAATTCACATATCATGATGCCACCgaatatcaatcaaatgtataaagccctttttacattggcagatgtcacaaagtgcaatATCATCATGAATGTAGTTGTTGACCTGTCTCCTTTGTTAAGGTGCCTGGGAGATATGATTGAACCAGAACACATACTGCTCCTCTGTGACTGTCTGCTACTCAGACCAAAGGAACGTCAAAATGAACATCTTATTTTAGCTCCGGAACACTGCCATTGTCGCCTGTCCTTTTTGTCAAATTGTATGTCTACACTGAGCTGTGTAAGCAAACGTAGAGCTACTCTTGTTTCCACTTCATTCATCCACtactgggctcctgagtggcacagcatctcagtgctagaggtgtcactacagaccctggttcgattccaggctgtatctccatgtttgggagtcccatagggcggtgcacaattggcccagcattttccggggtaggccgtcattgtaaataagaatgtgttcttaactgacttgactagttaaataaaaagttaaACTGTCATTGATTTCAcatgaaggggaggggggggggggggggggttcactacACTGTAACATCACATTCCATTGGATGTGCTGGTTCTAAAATGGTTATAGCTCGACTGAATGCACTGGGCCTCTTATGATTTTACAATCTAGAGAAGGGATTCTGTGATTTATGTTGCATTCTATCCCTAAACACTAGTTTTGACCAAACTTTCCTCTAACTCGTGTGTTGACTTAATCTTAAATACCCTTTGTATCAGCCGTAACGTATCTGACATGCTCTCTCTGTTGCAGTGCTGCATGTACAGTCTGTTCTTATCTCTATGGAAAATGTCTTTGTTCACCAGACCTTTTTCTCAATAAAAATTGTATCTAATTACA
>XM_021588703.2
ACGTCACATTCTCTTGCCAACCACGGGGACGCGCAAGAAGCGAGTGCGCTACGGACGGGAAGCAGCTCCTTGGAACTGACAAACTAACAACGAATTGGAATGGCTGCGATTTCTCCCTAATAAACGCGTTAACGTTACACAAATCAAAGAACAGGAAGTCCTGTTGACATCACCTCCTGTCTGCGGCGGCTATGTCGTGCCGGGACATCCACGCCACCAATGCCTTCTCCTTCATCATCGCCTTCATCTCCGTGGGCGGTATCGCTGTGGCGGCGCTGATCCCACAGTGGCGAGTGACACGGCTTGTCACCTTCAACAAAAACGCCAAGAACATCAGCGTCTATGATGGCCTGTGGGCCAAGTGTGTGAAACAAGATGGCTACTctggctgctactactacgactcAGAGTGGTATTCTAAAGTGGACCAGTTGGACCTGAGACTGCTCCAGTTCTGCCTGCCGACTGGGCTACTGTTTGGCTCCCTGGCCCTGGTGCTGTGTATGGCAGGCATGTCTAAGACCTGCTGCTGCTCTGATAAGGCTGAGACAGACATCAAGAGTACCCGCTGTCTGGTCAACAGCGCAGGCTGCCACCTAGTGGCCGGGATGTTCCTGTTCCTGGGCGGTGCTATCGCCCTGGCGCCTTCCGTGTGGTTCCTCTTCCGGACCAAAGAGATGAACATCAAGTACGACCGCATCTTCTCAGACGGGTTCGCGGTCTACGTGGCCATCGGCTGTTCCGGTGGCCTCATGCTCGCCGCCCTGCTGATGTTCATGTGGTACTGCATGTGTAAGAAGCTACCCTCTCCCTTCTGGCTGCCTCTCCCCACACTCCCTAACTCCCTCTCCACCCAGCCCCTCACAGCCAACGGGTACCCCCCCTCCCCTGTCTACGGACCCCCTCAGACCTTCCCTCCACAGGGGTACGTCCCCACTGTGATGGGTGCCCAGCCCTACGCTCCCTCCCAGGGCTACCCTCAGAGCGTAGCTCCactggcccagcagcctcagcAGGTCTGTATGTCCCAGATGTCAGCCCCGGATGGGTATGGGTCAGCTTACAGCTATGCCCCGTCCCAGAGTTATGCCCCCTCTCAGGTGGGCTACGCCCCCAGCTACGTAGGCCACCGCTACTCCACACGCTCACGCATGTCTGGCATAGAGATAGACATCCCTGTTCTAACACAAGacctctgagggagggagggctgctgCAAGAACACTGAGTCCTGGTTCCATTTAGCTGTCCTGTCTCCTGTAAAGGGTGTGTACTGTCAGTGAAGGATATGACTGTTGGTCAGTCTGCACTAGAAATACAACTGTGCGTCACTCAACCAAGCACTGCACTGTTAGACACAGTTTAGTATGCAGGCTCCACATCTGGTGAAAGGACACCAGAGATGCCCCATAATGAAGTCTGAATTCACTGTTACATTTTGATTGAAAACAATATTTTCTAATCACACCGATTTGTACATCTCTTCTTAATGTAAATCTGCTTGAAACCTCATAGCATTTCTACACTGTATAGTTCACTAATATTTCAAAATGAACTAAACTGTAGTCTAACTGTGAGGTAACTTGATGTAGTGAGGTAAAAGGGAGTGACACTAACAGACTGTGATGTCTTTGTtgtgcctgttgttttaatgtgtGTTGTTCATATTGTTGGTCTGTGAAGAAATGTTAATATAATATGCTGTAACATGTGAGATGACATGGGAATGTCCTAATGACTCATCCTATTTACCCATCAACAGTACAGCAGTGGCTCTAAGGACATGACTTTTTATATGTACACATTAATTAGATCATTTTGTATCTAATTCACATATCATGATGCCACCgaatatcaatcaaatgtataaagccctttttacattggcagatgtcacaaagtgcaatATCATCATGAATGTAGTTGTTGACCTGTCTCCTTTGTTAAGGTGCCTGGGAGATATGATTGAACCAGAACACATACTGCTCCTCTGTGACTGTCTGCTACTCAGACCAAAGGAACGTCAAAATGAACATCTTATTTTAGCTCCGGAACACTGCCATTGTCGCCTGTCCTTTTTGTCAAATTGTATGTCTACACTGAGCTGTGTAAGCAAACGTAGAGCTACTCTTGTTTCCACTTCATTCATCCACtactgggctcctgagtggcacagcatctcagtgctagaggtgtcactacagaccctggttcgattccaggctgtatctccatgtttgggagtcccatagggcggtgcacaattggcccagcattttccggggtaggccgtcattgtaaataagaatgtgttcttaactgacttgactagttaaataaaaagttaaACTGTCATTGATTTCAcatgaaggggaggggggggggggggggggttcactacACTGTAACATCACATTCCATTGGATGTGCTGGTTCTAAAATGGTTATAGCTCGACTGAATGCACTGGGCCTCTTATGATTTTACAATCTAGAGAAGGGATTCTGTGATTTATGTTGCATTCTATCCCTAAACACTAGTTTTGACCAAACTTTCCTCTAACTCGTGTGTTGACTTAATCTTAAATACCCTTTGTATCAGCCGTAACGTATCTGACATGCTCTCTCTGTTGCAGTGCTGCATGTACAGTCTGTTCTTATCTCTATGGAAAATGTCTTTGTTCACCAGACCTTTTTCTCAATAAAAATTGTATCTAATTACA
>XM_021588708.2
GTGACGTCACATTCTCTTGCCAACCACGGGGACGCGCAAGAAGCGAGTGCGCTACGGACGGGAAGCAGCTCCTTGGAACTGACAAACTAACAACGAATTGGAATGGCTGCGATTTCTCCCTAATAAACGCGTTAACGTTACACAAATCAAAGGAAGTCCTGTTGACATCACCTCCTGTCTGCGGCGGCTATGTCGTGCCGGGACATCCACGCCACCAATGCCTTCTCCTTCATCATCGCCTTCATCTCCGTGGGCGGTATCGCTGTGGCGGCGCTGATCCCACAGTGGCGAGTGACACGGCTTGTCACCTTCAACAAAAACGCCAAGAACATCAGCGTCTATGATGGCCTGTGGGCCAAGTGTGTGAAACAAGATGGCTACTctggctgctactactacgactcAGAGTGGTATTCTAAAGTGGACCAGTTGGACCTGAGACTGCTCCAGTTCTGCCTGCCGACTGGGCTACTGTTTGGCTCCCTGGCCCTGGTGCTGTGTATGGCAGGCATGTCTAAGACCTGCTGCTGCTCTGATAAGGCTGAGACAGACATCAAGAGTACCCGCTGTCTGGTCAACAGCGCAGGCTGCCACCTAGTGGCCGGGATGTTCCTGTTCCTGGGCGGTGCTATCGCCCTGGCGCCTTCCGTGTGGTTCCTCTTCCGGACCAAAGAGATGAACATCAAGTACGACCGCATCTTCTCAGACGGGTTCGCGGTCTACGTGGCCATCGGCTGTTCCGGTGGCCTCATGCTCGCCGCCCTGCTGATGTTCATGTGGTACTGCATGTGTAAGAAGCTACCCTCTCCCTTCTGGCTGCCTCTCCCCACACTCCCTAACTCCCTCTCCACCCAGCCCCTCACAGCCAACGGGTACCCCCCCTCCCCTGTCTACGGACCCCCTCAGACCTTCCCTCCACAGGGGTACGTCCCCACTGTGATGGGTGCCCAGCCCTACGCTCCCTCCCAGGGCTACCCTCAGAGCGTAGCTCCactggcccagcagcctcagcAGGTCTGTATGTCCCAGATGTCAGCCCCGGATGGGTATGGGTCAGCTTACAGCTATGCCCCGTCCCAGAGTTATGCCCCCTCTCAGGTGGGCTACGCCCCCAGCTACGTAGGCCACCGCTACTCCACACGCTCACGCATGTCTGGCATAGAGATAGACATCCCTGTTCTAACACAAGacctctgagggagggagggctgctgCAAGAACACTGAGTCCTGGTTCCATTTAGCTGTCCTGTCTCCTGTAAAGGGTGTGTACTGTCAGTGAAGGATATGACTGTTGGTCAGTCTGCACTAGAAATACAACTGTGCGTCACTCAACCAAGCACTGCACTGTTAGACACAGTTTAGTATGCAGGCTCCACATCTGGTGAAAGGACACCAGAGATGCCCCATAATGAAGTCTGAATTCACTGTTACATTTTGATTGAAAACAATATTTTCTAATCACACCGATTTGTACATCTCTTCTTAATGTAAATCTGCTTGAAACCTCATAGCATTTCTACACTGTATAGTTCACTAATATTTCAAAATGAACTAAACTGTAGTCTAACTGTGAGGTAACTTGATGTAGTGAGGTAAAAGGGAGTGACACTAACAGACTGTGATGTCTTTGTtgtgcctgttgttttaatgtgtGTTGTTCATATTGTTGGTCTGTGAAGAAATGTTAATATAATATGCTGTAACATGTGAGATGACATGGGAATGTCCTAATGACTCATCCTATTTACCCATCAACAGTACAGCAGTGGCTCTAAGGACATGACTTTTTATATGTACACATTAATTAGATCATTTTGTATCTAATTCACATATCATGATGCCACCgaatatcaatcaaatgtataaagccctttttacattggcagatgtcacaaagtgcaatATCATCATGAATGTAGTTGTTGACCTGTCTCCTTTGTTAAGGTGCCTGGGAGATATGATTGAACCAGAACACATACTGCTCCTCTGTGACTGTCTGCTACTCAGACCAAAGGAACGTCAAAATGAACATCTTATTTTAGCTCCGGAACACTGCCATTGTCGCCTGTCCTTTTTGTCAAATTGTATGTCTACACTGAGCTGTGTAAGCAAACGTAGAGCTACTCTTGTTTCCACTTCATTCATCCACtactgggctcctgagtggcacagcatctcagtgctagaggtgtcactacagaccctggttcgattccaggctgtatctccatgtttgggagtcccatagggcggtgcacaattggcccagcattttccggggtaggccgtcattgtaaataagaatgtgttcttaactgacttgactagttaaataaaaagttaaACTGTCATTGATTTCAcatgaaggggaggggggggggggggggggttcactacACTGTAACATCACATTCCATTGGATGTGCTGGTTCTAAAATGGTTATAGCTCGACTGAATGCACTGGGCCTCTTATGATTTTACAATCTAGAGAAGGGATTCTGTGATTTATGTTGCATTCTATCCCTAAACACTAGTTTTGACCAAACTTTCCTCTAACTCGTGTGTTGACTTAATCTTAAATACCCTTTGTATCAGCCGTAACGTATCTGACATGCTCTCTCTGTTGCAGTGCTGCATGTACAGTCTGTTCTTATCTCTATGGAAAATGTCTTTGTTCACCAGACCTTTTTCTCAATAAAAATTGTATCTAATTACA

Function

NR:

description
claudin-12-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588712.2 False 2799 mRNA 0.48 3 6901478 6905095
XM_021588703.2 False 2720 mRNA 0.48 3 6901478 6905283
XM_021588708.2 True 2718 mRNA 0.48 3 6901478 6905286

Neighbor

gene id symbol gene type direction distance location
LOC118945258 NA coding downstream 32425 6862876 ~ 6869053 (-)
LOC110507764 LOC106576048 coding downstream 107200 6776481 ~ 6794278 (-)
LOC110507788 LOC106574611 coding downstream 156805 6714243 ~ 6744673 (-)
LOC110507843 LOC106576069 coding downstream 244590 6656513 ~ 6656888 (-)
LOC110507876 rpp38 coding downstream 277511 6622171 ~ 6623967 (-)
LOC110508304 gtpbp10 coding upstream 24171 6929457 ~ 6932661 (-)
LOC118964351 LOC106605995 coding upstream 43159 6948445 ~ 6952369 (-)
LOC118944481 LOC106575260 coding upstream 47870 6953156 ~ 6953874 (-)
zgc:174935 LOC106605997 coding upstream 70877 6976163 ~ 6979189 (-)
LOC110508339 NA coding upstream 83612 6988898 ~ 6993845 (-)
G220074 NA non-coding downstream 59346 6840522 ~ 6842132 (-)
G220064 NA non-coding downstream 76265 6824975 ~ 6825213 (-)
G220063 NA non-coding downstream 77261 6823909 ~ 6824217 (-)
G219936 NA non-coding downstream 84973 6816285 ~ 6816505 (-)
G220116 NA non-coding upstream 27698 6932984 ~ 6933221 (-)
G220194 NA non-coding upstream 34814 6940100 ~ 6940522 (-)
G220201 NA non-coding upstream 46236 6951522 ~ 6951988 (-)
G220208 NA non-coding upstream 54237 6959523 ~ 6982097 (-)
G220218 NA non-coding upstream 82083 6987369 ~ 6988252 (-)
LOC110507902 LOC106593870 other downstream 410463 6479543 ~ 6491729 (-)
LOC110534138 LOC106605946 other downstream 559865 6329602 ~ 6349701 (-)
G219820 LOC106605946 other downstream 562665 6332968 ~ 6338813 (-)
G219592 NA other downstream 1149384 5751724 ~ 5752094 (-)
G219591 NA other downstream 1152764 5748158 ~ 5748714 (-)
G220202 LOC106605995 other upstream 47273 6952559 ~ 6952963 (-)
G220209 LOC105030512 other upstream 61795 6967081 ~ 6970500 (-)

Expression


Co-expression Network