LOC118964351 (LOC106605995)


Basic Information

Item Value
gene id LOC118964351
gene name LOC106605995
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6948445 ~ 6952369 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036975429.1
ATGGAGAATACGAAGAGGACATCAAAACCAGTTAATGGTGTGACCCCTGGTCATCTGGAAGAGCCAGAGACTGATGCCAAACCTGTCAAACAGGACGCCTCAGGTTTAGGGGGTGAGAATCTCCCCAGCAGACTTATAGTGGTGGAGTTCAAATCCCTCACCGTGGCAACACCGGCAAGACCTAAACCACGCCCTATGGAGACGCACGGCAATGTCAACAGGAAGGACTTTAAACGCTTCCGCAAGgtcccAGTTCCCGGTGCCCAGGGTTTGCCCAACATCATCGGCGGGTCAGACCTGTTGGCCCACAACCGAGGCAAGAACTCTGAGCTGGAGGAGTGGCTGAGAGACGCAGCAGAGgatgAGCGTCAGAACAAGAAAGAGGAGACTTTGGGAGATGACCTCTTCAGgtACAACCCCAAACCCACCAAGAAAAGATGAGAGCACCTGGTTGTAACATGTGAAGCCCTGTTGACAAATGTTCATCTTAAGACACAGGAAGGGATGCCAACACCCCATGGAATGTTTTGGCTTCTAGAATTCTCCGTTTGATAGAACTGCCATCTCCGCTCCACTAATAATGTTCAGGAATGGATCTTGAGTTAACTCTGGTCATTTTGAGTACAATGATCAAGAGGGGCCTGTCAATGACAAATTTTAACAATGTTTGTCGGTGATAGATGTGGGCAGAAATGTCTGTCTATGTACTGTACACTAACTATATACCTTGATTTAGTCACTGATGGCGAGCTATGTAAACAAATAAATAGGTTTTACGTTTCAAGATTTTTATTTGTTCATAATAAAAAATACAGTATACAAAA
>TU251203
TGGAGTTCAAATCCCTCACCGTGGCAACACCGGCAAGACCTAAACCACGCCCTATGGAGACGCACGGCAATGTCAACAGGAAGGACTTTAAACGCTTCCGCAAGgtcccAGTTCCCGGTGCCCAGGGTTTGCCCAACATCATCGGCGGGTCAGACCTGTTGGCCCACAACCGAGGCAAGAACTCTGAGCTGGAGGAGTGGCTGAGAGACGCAGCAGAGgatgAGCGTCAGAACAAGAAAGAGGAGACTTTGGGAGATGACCTCTTCAGgtACAACCCCAAACCCACCAAGAAAAGATGAGAGCACCTGGTTGTAACATGTGAAGCCCTG

Function

NR:

description
PREDICTED: nibrin-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036975429.1 False 824 mRNA 0.46 6 6948445 6952369
TU251203 True 329 TUCP 0.37 4 6948798 6950956

Neighbor

gene id symbol gene type direction distance location
LOC110508304 gtpbp10 coding downstream 15784 6929457 ~ 6932661 (-)
LOC110508277 cld12 coding downstream 43159 6901478 ~ 6905286 (-)
LOC118945258 NA coding downstream 79392 6862876 ~ 6869053 (-)
LOC110507764 LOC106576048 coding downstream 154167 6776481 ~ 6794278 (-)
LOC110507788 LOC106574611 coding downstream 203772 6714243 ~ 6744673 (-)
LOC118944481 LOC106575260 coding upstream 787 6953156 ~ 6953874 (-)
zgc:174935 LOC106605997 coding upstream 23794 6976163 ~ 6979189 (-)
LOC110508339 NA coding upstream 36529 6988898 ~ 6993845 (-)
il6r il6ra coding upstream 255552 7158585 ~ 7220080 (-)
LOC110520786 atp8b2 coding upstream 269627 7221996 ~ 7320978 (-)
G220194 NA non-coding downstream 7923 6940100 ~ 6940522 (-)
G220116 NA non-coding downstream 15224 6932984 ~ 6933221 (-)
G220074 NA non-coding downstream 106313 6840522 ~ 6842132 (-)
G220064 NA non-coding downstream 123232 6824975 ~ 6825213 (-)
G220208 NA non-coding upstream 7154 6959523 ~ 6982097 (-)
G220218 NA non-coding upstream 35000 6987369 ~ 6988252 (-)
G220217 NA non-coding upstream 35958 6988327 ~ 6988873 (-)
G220222 NA non-coding upstream 48063 7000432 ~ 7001479 (-)
G220226 NA non-coding upstream 64126 7016495 ~ 7016709 (-)
LOC110507902 LOC106593870 other downstream 457430 6479543 ~ 6491729 (-)
LOC110534138 LOC106605946 other downstream 606832 6329602 ~ 6349701 (-)
G219820 LOC106605946 other downstream 609632 6332968 ~ 6338813 (-)
G219592 NA other downstream 1196351 5751724 ~ 5752094 (-)
G220202 LOC106605995 other upstream 190 6952559 ~ 6952963 (-)
G220209 LOC105030512 other upstream 14712 6967081 ~ 6970500 (-)
G220229 LOC100135938 other upstream 67607 7019976 ~ 7061831 (-)
G220242 LOC100194679 other upstream 130376 7082745 ~ 7083691 (-)
G220201 NA non-coding upstream 566 6951522 ~ 6951988 (-)

Expression


Co-expression Network