zgc:174935 (LOC106605997)


Basic Information

Item Value
gene id zgc:174935
gene name LOC106605997
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6976163 ~ 6979189 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967226.1
TCCGCTCAAGTACAGTGGGTGGCCACCTGTCCTTTCACACTCCATTGGTACTTCCGCTGTAAGTCTACGAGGACGTCGTCAACACTTCTGCGGAGCAGTCGAGAGGGACCAGCGAAAACGACTGTTCCTTGGTCAAACTCCACGGCATGATGAAGTCACAGGGTGTATTGGTGGGGGTGTCTCTGCTAACTAGCGTAGCTCTGCTGGGACTGATAAACGTGCGGCAGAAAGAAGAGATGAAGGAGCAGAAACATGTATCGTTCGAGACGATTAAACTGCGTGTGACCAGAGACGTACTGGGAGAATACCAACACGAGGTGATCAGAGCTCACAACCTGCTGGACAAGACCAAGGCTCAGGTGGATACTCTGGGGTCAGAACTCCCCCCACTGCAGGCTGCAGAggccaagaagaagagtgaactGGAGGCATGCCAGGGAGAAAAGAAACATGTCGCTGATGAGGTGGGGGCCATTGAGGCAGAGAACAGTAACTCTAAAACTGAGTTTGAGAAGCAAAAGGCTGCCTGGGAAGCAGAGATGACGTCTCTCAAACAGCAGGTGGTGCAGCGCAGCAAAGTGTGTGTCTTTGTGAAGAAGGACTCTGTAGAGGGAAGGAAACTGTGTGGAGATGAACCGCCTAAACAAGAGGCCGCTCCAAAACCAGATGCCCCCAAACCAGAAGAATCCAAACCAGATGCTCCCAAACCTGATTCTCCTAAAGAAGCCTCCAAACCAGACGAACCCAAACCTGATTCTCCTAAAGAAGCCCCTAAACAAGAGGCTGCCCCCAAACCAGAAGAACCCAAACCTGATTCTCCTAAAGAAGCCCCTAAACAAGAGGCTGCCCCCAAACCAGAAGAACCCAAACCTGATTCTCCTAAAGAAGCCCCTAAACAAGAGGCTGCCCCCAAACCAGAAGAACCCAAACCTGATTCTCCTAAAGAAGCCCCTAAACAAGAGGCTGCCCCCAAACCAGAAGAACCCAAACCTGAGGCCCCAAAGATGAGATGAGCAGAGCTGGGGATGGACGAAGAGAACGGGAAGAGCCACGTGGAATCAAAGAAAAGACATAAGGAAGGCAGATGAAAAATGGAGACCTTCTGCAGGACATTTCTCTGTTCCTTTTTAAACTTGTTAGAACTTGTCCTTCATGCTACTTTAGAGTGTCTATTAACTACCATCTAACATGAGTGGATATTGAATATTTTTGTTAACcttgtccattcctctctctcagtatgacCCTCCCTCagggggtgtttgtgtgtgtgatttgaaCAAATGTGTATGTGTCACCAGTATCGACCAATCGGAAAGTCCAgagcctctctctgtcactcctcatCATCCTCACTCTGTTACCCCCGGTGACGGTATTTTGCAGTGGTGGCGACCATAGCATTGACCAATCAAAAGTCCTGGATTAAACTAATGGTATTTCTGTTTGTCTGATTCTGATGTAATAAAGCTTAACCCTAAAGGAAA

Function

NR:

description
ralA-binding protein 1-A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967226.1 True 1487 mRNA 0.49 5 6976163 6979189

Neighbor

gene id symbol gene type direction distance location
LOC118944481 LOC106575260 coding downstream 22289 6953156 ~ 6953874 (-)
LOC118964351 LOC106605995 coding downstream 23794 6948445 ~ 6952369 (-)
LOC110508304 gtpbp10 coding downstream 43502 6929457 ~ 6932661 (-)
LOC110508277 cld12 coding downstream 70877 6901478 ~ 6905286 (-)
LOC118945258 NA coding downstream 107110 6862876 ~ 6869053 (-)
LOC110508339 NA coding upstream 9709 6988898 ~ 6993845 (-)
il6r il6ra coding upstream 228732 7158585 ~ 7220080 (-)
LOC110520786 atp8b2 coding upstream 242807 7221996 ~ 7320978 (-)
LOC118945273 NA coding upstream 244937 7224126 ~ 7226076 (-)
LOC110536068 LOC106595411 coding upstream 343847 7323036 ~ 7343283 (-)
G220201 NA non-coding downstream 24175 6951522 ~ 6951988 (-)
G220194 NA non-coding downstream 35641 6940100 ~ 6940522 (-)
G220116 NA non-coding downstream 42942 6932984 ~ 6933221 (-)
G220074 NA non-coding downstream 134031 6840522 ~ 6842132 (-)
G220218 NA non-coding upstream 8180 6987369 ~ 6988252 (-)
G220217 NA non-coding upstream 9138 6988327 ~ 6988873 (-)
G220222 NA non-coding upstream 21243 7000432 ~ 7001479 (-)
G220226 NA non-coding upstream 37306 7016495 ~ 7016709 (-)
G220229 LOC100135938 non-coding upstream 40787 7019976 ~ 7061831 (-)
G220209 LOC105030512 other downstream 5663 6967081 ~ 6970500 (-)
G220202 LOC106605995 other downstream 23200 6952559 ~ 6952963 (-)
LOC110507902 LOC106593870 other downstream 485148 6479543 ~ 6491729 (-)
G220242 LOC100194679 other upstream 103556 7082745 ~ 7083691 (-)
G220261 NA other upstream 120149 7099338 ~ 7100170 (-)
G220751 NA other upstream 197203 7176392 ~ 7201421 (-)

Expression


Co-expression Network