LOC110508323 (LOC106575347)


Basic Information

Item Value
gene id LOC110508323
gene name LOC106575347
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6979131 ~ 6988449 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588758.2
atttaggGTATGGACGTCCCAAGGCTCCCAGATAGCACTAGCAAACCTGGCACTGCTACGCGGAAGTAAATGGATGAATGCAAAATAGTCATCAGCACTCCGGAATTCAAGGGAATATAAACGTAAAAAGTATGCGGGCTGTGTCTGCGCTAGTGTTTCTGGCCGTGggtgtgatggtggtgttgatgtacCAGGCGGTCCGCCAGGAGCTGACTCTGCAGGGTCTTAAAGCCCGCGCTCTGGAGAGCTCCTCTCAGGTCAAGCAGAAGGAGAACGACATCGTCCAGGTCAAGATGAAGATCCAGAAGCTGAATGGTGAGCTGGAGCCCATCAACACCAAGAGAGAGGAGCTGACTAAGAAGAAGGAGCAGTCTGCTAAAGCCACAGGCGAGGCGGACAAGAGTCTAAAGACCTGTCATACAGAGAAGGCCGATGCAGAGAAAAAGAAGACTGACGCGTCGGCGGCTCTTCAGAAAGTTAAAGATGATCAAGAAGCACAGAAGAAGAAAGCTCAGGAGGAGATCCAGGCGTTGAAACAGCAGATTCTGGAGCGGGACAAGGCACTGTGTGCCTTTGTGGACCAGACCAATGAGGAAGGACGGAAGCTGTGTGGAATCACAGAGGCCCCAAAATGAAGACTTGGAATAGACTATcagcctccatctctccctccctccctcatgcttGCCGTgatgcacacacacccatacacatcaTCGTTGTGCAGCTCATAACATTCCCCACCTACAACCACCTTCACTTCACTGTACCTCTCAATACTCaggaaaataaaaaacaagaaggGTTTGGAAAACCCAGTCTGAATGTCATGtcttcattacatacagtacactgtTAGTTTGTGTATGCAGGTAAGGAAGGGAgacattacattttttaattAGTGAGTTTCATCCTATGGTACAGGACATTAATGTAGGAATGACTGAAAGAGGTTAGGGCTAATTCCCTCAGAGATGGAGCAAGGTGTCTCTGAGGTGACTTCTGAATGTTGCAAAGGTTCTAGAGAAGAGTTCTAAAGAAGTGTGAAGGTGCATGCCCATCTGGTTCAA
>XR_005040328.1
atttaggGTATGGACGTCCCAAGGCTCCCAGATAGCACTAGCAAACCTGGCACTGCTACGCGGAAGTAAATGGATGAATGCAAAATAGTCATCAGCACTCCGGAATTCAAGGGAATATAAACGTAAAAAGTATGCGGGCTGTGTCTGCGCTAGTGTTTCTGGCCGTGggtgtgatggtggtgttgatgtacCAGGCGGTCCGCCAGGAGCTGACTCTGCAGGGTCTTAAAGCCCGCGCTCTGGAGAGCTCCTCTCAGGTCAAGCAGAAGGAGAACGACATCGTCCAGGTCAAGATGAAGATCCAGAAGCTGAATGGTGAGCTGGAGCCCATCAACACCAAGAGAGAGGAGCTGACTAAGAAGAAGGAGCAGTCTGCTAAAGCCACAGGCGAGGCGGACAAGAGTCTAAAGACCTGTCATACAGAGAAGGCCGATGCAGAGAAAAAGAAGACTGACGCGTCGGCGGCTCTTCAGAAAGTTAAAGATGATCAAGAAGCACAGAAGAAGAAAGCTCAGGAGGAGATCCAGGCGTTGAAACAGCAGATTCTGGAGCGGGACAAGGCACTGTGTGCCTTTGTGGACCAGACCAATGAGGAAGGACGGAAGCTGTGTGGAATCACAGAGGCCCCAAAATGAAGACTTGGAATAGACTATcagcctccatctctccctccctccctcatgcttGCCGTgatgcacacacacccatacacatcaTCGTTGTGCAGCTCATAACATTCCCCACCTACAACCACCTTCACTTCACTGTACCTCTCAATACTCaggaaaataaaaaacaagaaggGTTTGGAAAACCCAGTCTGAATGTCATGtcttcattacatacagtacactgtTAGTTTGTGTATGCAGGACATTAATGTAGGAATGACTGAAAGAGGTTAGGGCTAATTCCCTCAGAGATGGAGCAAGGTGTCTCTGAGGTGACTTCTGAATGTTGCAAAGGTTCTAGAGAAGAGTTCTAAAGAAGTGTGAAGGTGCATGCCCATCTGGTTCAA
>XM_021588767.2
gaagtggggagggagggagataaaagCGGTGGGAGTGTGGTAGTTAAACAAGGAAGTAGAATTTGCTTTGTCGACCAAACATTCTGCCTAGCAGGACGAACCAGTTACAGGTGGACAGACTGCCATCAGCAACCAGAGAGAGGGaatttgaacacacacactctccaacacacacaggcTGACTATGGGGATGGTGGAGAAGTGACCGATCAAGACAGCAACCAAGAAAGACAAACTGGACCTGACTTGAgcctcatctcactctctctttctctacctccttccttctctctgtcctgtcccaGCAGTATGCGGGCTGTGTCTGCGCTAGTGTTTCTGGCCGTGggtgtgatggtggtgttgatgtacCAGGCGGTCCGCCAGGAGCTGACTCTGCAGGGTCTTAAAGCCCGCGCTCTGGAGAGCTCCTCTCAGGTCAAGCAGAAGGAGAACGACATCGTCCAGGTCAAGATGAAGATCCAGAAGCTGAATGGTGAGCTGGAGCCCATCAACACCAAGAGAGAGGAGCTGACTAAGAAGAAGGAGCAGTCTGCTAAAGCCACAGGCGAGGCGGACAAGAGTCTAAAGACCTGTCATACAGAGAAGGCCGATGCAGAGAAAAAGAAGACTGACGCGTCGGCGGCTCTTCAGAAAGTTAAAGATGATCAAGAAGCACAGAAGAAGAAAGCTCAGGAGGAGATCCAGGCGTTGAAACAGCAGATTCTGGAGCGGGACAAGGCACTGTGTGCCTTTGTGGACCAGACCAATGAGGAAGGACGGAAGCTGTGTGGAATCACAGAGGCCCCAAAATGAAGACTTGGAATAGACTATcagcctccatctctccctccctccctcatgcttGCCGTgatgcacacacacccatacacatcaTCGTTGTGCAGCTCATAACATTCCCCACCTACAACCACCTTCACTTCACTGTACCTCTCAATACTCaggaaaataaaaaacaagaaggGTTTGGAAAACCCAGTCTGAATGTCATGtcttcattacatacagtacactgtTAGTTTGTGTATGCAGGTAAGGAAGGGAgacattacattttttaattAGTGAGTTTCATCCTATGGTACAGGACATTAATGTAGGAATGACTGAAAGAGGTTAGGGCTAATTCCCTCAGAGATGGAGCAAGGTGTCTCTGAGGTGACTTCTGAATGTTGCAAAGGTTCTAGAGAAGAGTTCTAAAGAAGTGTGAAGGTGCATGCCCATCTGGTTCAA
>TU251106
CAGCGGAAGTACCAATGGAGTGTGAAAGGACAGGTGGCCACCCACTGTACTTGAGCGGAGTCTGTGCTTCAGCTTTCAGGTGAAACGGAAGTCAGGTTGAAAATTCTATATCCCTGAAAAACAGAAACATCTGCTTCTGTCGACTCCGCGGAGAGCGCACttattcttcttcttttttctttTGGAGAGAGCTTCACCAAAACCATCCCCGTGCCCGCCCACCTGTCACGGTCTGTcatgctatctgggatccttgggatggGCCTACCTCCCTTTGAAGTTGACTTTTAAAATAGTTAATCATTCTTAAAGTTAGGTAAGaattatggttaaggttagagtaagagtagggtttaaggttaggatttaggGTATGGACGTCCCAAGGCTCCCAGATAGCACTAGCAAACCTGGCACTGCTACGCGGAAGTAAATGGATGAATGCAAAATAGTCATCAGCACTCCGGAATTCAAGGGAATATAAACGTAAAAAGTATGCGGGCTGTGTCTGCGCTAGTGTTTCTGGCCGTGggtgtgatggtggtgttgatgtacCAGGCGGTCCGCCAGGAGCTGACTCTGCAGGGTCTTAAAGCCCGCGCTCTGGAGAGCTCCTCTCAGGTCAAGCAGAAGGAGAACGACATCGTCCAGGTCAAGATGAAGATCCAGAAGCTGAATGGTGAGCTGGAGCCCATCAACACCAAGAGAGAGGAGCTGACTAAGAAGAAGGAGCAGTCTGCTAAAGCCACAGGCGAGGCGGACAAGAGTCTAAAGACCTGTCATACAGAGAAGGCCGATGCAGAGAAAAAGAAGACTGACGCGTCGG
>TU251108
aggatttaggGTATGGACGTCCCAAGGCTCCCAGATAGCACTAGCAAACCTGGCACTGCTACGCGGAAGTAAATGGATGAATGCAAAATAGTCATCAGCACTCCGGAATTCAAGGGAATATAAACGTAAAAAGTATGCGGGCTGTGTCTGCGCTAGTGTTTCTGGCCGTGggtgtgatggtggtgttgatgtacCAGGCGGTCCGCCAGGAGCTGACTCTGCAGGGTCTTAAAGCCCGCGCTCTGGAGAGCTCCTCTCAGGTCAAGCAGAAGGAGAACGACATCGTCCAGGTCAAGATGAAGATCCAGAAGCTGAATGGTGAGCTGGAGCCCATCAACACCAAGAGAGAGGAGCTGACTAAGAAGAAGGAGCAGTCTGCTAAAGCCACAGGCGAGGCGGACAAGAGTCTAAAGACCTGTCATACAGAGAAGGCCGATGCAGAGAAAAAGAAGACTGACGCGTCGG
>TU251111
AGTAAATGGATGAATGCAAAATAGTCATCAGCACTCCGGAATTCAAGGGAATATAAACGTAAAAAGTATGCGGGCTGTGTCTGCGCTAGTGTTTCTGGCCGTGggtgtgatggtggtgttgatgtacCAGGCGGTCCGCCAGGAGCTGACTCTGCAGGGTCTTAAAGCCCGCGCTCTGGAGAGCTCCTCTCAGGTCAAGCAGAAGGAGAACGACATCGTCCAGGTCAAGATGAAGATCCAGAAGCTGAATGGTGAGCTGGAGCCCATCAACACCAAGAGAGAGGAGCTGACTAAGAAGAAGGAGCAGTCTGCTAAAGCCACAGGCGAGGCGGACAAGAGTCTAAAGACCTGTCATACAGAGAAGGCCGATGCAGAGAAAAAGAAGACTGACGCGTCGG
>TU251107
AACATTCTGCCTAGCAGGACGAACCAGTTACAGGTGGACAGACTGCCATCAGCAACCAGAGAGAGGGaatttgaacacacacactctccaacacacacaggcTGACTATGGGGATGGTGGAGAAGTGACCGATCAAGACAGCAACCAAGAAAGACAAACTGGACCTGACTTGAgcctcatctcactctctctttctctacctccttccttctctctgtcctgtcccaGCAGTATGCGGGCTGTGTCTGCGCTAGTGTTTCTGGCCGTGggtgtgatggtggtgttgatgtacCAGGCGGTCCGCCAGGAGCTGACTCTGCAGGGTCTTAAAGCCCGCGCTCTGGAGAGCTCCTCTCAGGTCAAGCAGAAGGAGAACGACATCGTCCAGGTCAAGATGAAGATCCAGAAGCTGAATGGTGAGCTGGAGCCCATCAACACCAAGAGAGAGGAGCTGACTAAGAAGAAGGAGCAGTCTGCTAAAGCCACAGGCGAGGCGGACAAGAGTCTAAAGACCTGTCATACAGAGAAGGCCGATGCAGAGAAAAAGAAGACTGACGCGTCGG
>TU251101
tccctccctccctcatgcttGCCGTgatgcacacacacccatacacatcaTCGTTGTGCAGCTCATAACATTCCCCACCTACAACCACCTTCACTTCACTGTACCTCTCAATACTCaggaaaataaaaaacaagaaggGTTTGGAAAACCCAGTCTGAATGTCATGtcttcattacatacagtacactgtTAGTTTGTGTATGCAGGTAAGGAAGGGAgacattacattttttaattAGTGAGTTTCATCCTATGGTACAGGACATTAATGTAGGAATGACTGAAAGAGGTTAGGGCTAATTCCCTCAGAGATGGAGCAAGGTGTCTCTGAGGTGACTTCTGAATGTTGCAAAGGTTCTAGAGAAGAGTTCTAAAGAAGTGTGAAGGTGCATGCCCATCTGGTTCAATTGTCTATTAAATATTTATTATGCATAGATGTATGATTGACCTTTATAGTGCATAGATCTATGATTGACTTTTATAGTGCATAGATCTATGATTGACCTTTATAGTGCATAGATCTATGATTGACCTTTATAGTGCATAGATCTATGATTGACCTTTATAGTGCATAGATCTATGATTGGCTTTTATAGTGCATAGATGTATGATTTACCTATATAGTGTATAGATTTATGATGGACGTGTGCGTTAATCAGAGTAGAACATTGCCCTGTGTGGGTAATGGGAAAATTTCAGATGAATAAAGTGAATATTCAGTTCACAGTAATTAACACAATGATTAGCATATGTATATGTTTTCCCTTTCTATAATACACATGTTTTCCAATGTTCTATTTGTGAGACTCACTTTTGTatgggttgatggtcactagaccTGAGCTACTGAAGGTACAAGGACCGAGAACACACAGATTATTATTGTATTGATGACATGAACATTGTGTGATTCTGTAGCAGCCGGCAAAGTCACTGTCTTTTGTATTGACATTGACATTTGGTACTGTCTGATTAGAATAGGAAGGTTCTGTCTCCAAAAGCCCCGTTGGACATTTTCTATGCTTCTGTTCTGGAGGTGTCTCCCTGAATGATTGTATTAAACTGGATGGATTTGATTGATATTATCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588758.2 False 1073 mRNA 0.48 5 6979495 6987767
XR_005040328.1 False 1018 mRNA 0.49 6 6979495 6987767
XM_021588767.2 False 1251 mRNA 0.49 4 6981492 6987767
TU251106 False 826 TUCP 0.40 3 6979131 6986522
TU251108 False 465 TUCP 0.31 3 6979492 6986522
TU251111 False 398 TUCP 0.52 3 6979559 6986522
TU251107 False 563 TUCP 0.53 2 6981569 6986522
TU251101 True 1089 lncRNA 0.47 1 6987361 6988449

Neighbor

gene id symbol gene type direction distance location
LOC110520781 osgin2 coding upstream 31519 6937600 ~ 6947976 (+)
LOC110508266 LOC106511201 coding upstream 50095 6828683 ~ 6929400 (+)
LOC110507732 LOC106576036 coding upstream 168201 6794547 ~ 6811294 (+)
LOC110507774 LOC106605985 coding upstream 203015 6773881 ~ 6777798 (+)
LOC110507743 LOC106605986 coding upstream 206431 6754839 ~ 6773064 (+)
them4 LOC106592246 coding downstream 5300 6993067 ~ 6996424 (+)
LOC110520784 LOC106575322 coding downstream 28924 7016691 ~ 7045216 (+)
LOC100135938 LOC106575366 coding downstream 58968 7046735 ~ 7061832 (+)
LOC110508369 LOC106575371 coding downstream 75851 7063618 ~ 7079482 (+)
LOC110508390 LOC100194679 coding downstream 92683 7080450 ~ 7084314 (+)
G220125 NA non-coding upstream 2028 6977004 ~ 6977467 (+)
G220134 NA non-coding upstream 24756 6954149 ~ 6954739 (+)
G219063 NA non-coding upstream 113844 6862939 ~ 6865651 (+)
G219026 NA non-coding upstream 162916 6816286 ~ 6816579 (+)
G220178 NA non-coding downstream 91913 7079680 ~ 7079902 (+)
G220184 NA non-coding downstream 114531 7102298 ~ 7103268 (+)
G220185 NA non-coding downstream 115988 7103755 ~ 7103963 (+)
G220186 NA non-coding downstream 116921 7104688 ~ 7104965 (+)
G218971 NA other upstream 260332 6717628 ~ 6719163 (+)
LOC110507851 acbd7 other upstream 347894 6624575 ~ 6631601 (+)
LOC110520771 fam171a1 other upstream 372486 6560989 ~ 6607009 (+)
LOC110536044 LOC106575458 other downstream 360525 7348131 ~ 7357408 (+)
G220435 NA other downstream 371901 7359668 ~ 7365285 (+)
G220445 LOC106575489 other downstream 390491 7378258 ~ 7381563 (+)
LOC118945274 LOC106575512 other downstream 458602 7437011 ~ 7447882 (+)
LOC110520790 LOC106606111 other downstream 1182940 8170634 ~ 8178058 (+)
LOC110508323 LOC106575347 other upstream 839 6979131 ~ 6988449 (+)

Expression


Co-expression Network