LOC110508339


Basic Information

Item Value
gene id LOC110508339
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6988898 ~ 6993845 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002471278.2
TGTAATTGGCAGCGAAGGAAGGATATTTCCGGCTACataggttagttaccatgccAACGTAGACAGACTCGCCTCCATCCTTTGAGACGCTGACATGTTTTTAACCATTTATTCGTTTATTGTGCAGTCTTTGATAAAGCAAGATACTGGTGACTATTTACTTCAAATAAACTGCCAGCAGGATGTTTGGTTGTGAGGAACGACGTTCCAAAAACAAACTTGTGCAGAGGACGAGAGACAGAATCAAGtaTCTGTGGTGAAATGCAAAATGCTGAGTTTGAGGGCTCCACCCAGGCTGGTTCCATGAGGACCCTGAAGCTGAGAGAACTGacccagcagagagagactgagctgGGAAAGACTGCTCTGACGATGgtccGTAGAGCAGCACTGCAGGCCCTCCTGGAGCATGAGAGACAGCAGTACGTCATAGAGCTCAACAGACTGGGCAAGACCATCTACAAACAGAGAGTCTAGACTCTAGTCCCTACTAGACCCATAACAACACCAAAGACCATCTGAAGTTTATGCTGAAAGCCATCTAGCAGCTAGGATGTGTGAACAAATATAGAATACTTTGAAGTATTAATGTGAAAACATTTACTCACAGCCATCTACAAGCACCTTGTTTACAATTTAATATGTGTTTTTTCTTTAGGATTACAGTTTTACATCGTATTTCCATAAATAAAAAAAGGTCTGATCTGTA
>XM_021588793.2
GTATTATCTGACTGAGTACAGGGTGTCCCACTGTATGACAACAGAACAGCATGACACGGCAGAAACATCCAGAACGAAAAACATTACTGCACAGATGACAATGCACATTGTGGGAAAAAAATAATGTTTCTATCGGCAGTAACGTTCGGGAAAAGGGAACTATGACAAATGTTTAGtaTCTGTGGTGAAATGCAAAATGCTGAGTTTGAGGGCTCCACCCAGGCTGGTTCCATGAGGACCCTGAAGCTGAGAGAACTGacccagcagagagagactgagctgGGAAAGACTGCTCTGACGATGgtccGTAGAGCAGCACTGCAGGCCCTCCTGGAGCATGAGAGACAGCAGTACGTCATAGAGCTCAACAGACTGGGCAAGACCATCTACAAACAGAGAGTCTAGACTCTAGTCCCTACTAGACCCATAACAACACCAAAGACCATCTGAAGTTTATGCTGAAAGCCATCTAGCAGCTAGGATGTGTGAACAAATATAGAATACTTTGAAGTATTAATGTGAAAACATTTACTCACAGCCATCTACAAGCACCTTGTTTACAATTTAATATGTGTTTTTTCTTTAGGATTACAGTTTTACATCGTATTTCCATAAATAAAAAAAGGTCTGATCTGTA
>XR_002471280.2
TACAGTATTATCTGACTGAGTACAGGGTGTCCCACTGTATGACAACAGAACAGCATGACACGGCAGAAACATCCAGAACGAAAAACATTACTGCACAGATGACAATGCACATTGTGGGAAAAAAATAATGTTTCTATCGGCAGTAACGTTCGGGAAAAGGGAACTATGACAAATGTTTAGCAGGATGTTTGGTTGTGAGGAACGACGTTCCAAAAACAAACTTGTGCAGAGGACGAGAGACAGAATCAAGtaTCTGTGGTGAAATGCAAAATGCTGAGTTTGAGGGCTCCACCCAGGCTGGTTCCATGAGGACCCTGAAGCTGAGAGAACTGacccagcagagagagactgagctgGGAAAGACTGCTCTGACGATGgtccGTAGAGCAGCACTGCAGGCCCTCCTGGAGCATGAGAGACAGCAGTACGTCATAGAGCTCAACAGACTGGGCAAGACCATCTACAAACAGAGAGTCTAGACTCTAGTCCCTACTAGACCCATAACAACACCAAAGACCATCTGAAGTTTATGCTGAAAGCCATCTAGCAGCTAGGATGTGTGAACAAATATAGAATACTTTGAAGTATTAATGTGAAAACATTTACTCACAGCCATCTACAAGCACCTTGTTTACAATTTAATATGTGTTTTTTCTTTAGGATTACAGTTTTACATCGTATTTCCATAAATAAAAAAAGGTCTGATCTGTA
>TU251236
TGACAACAGAACAGCATGACACGGCAGAAACATCCAGAACGAAAAACATTACTGCACAGATGACAATGCACATTGTGGGAAAAAAATAATGTTTCTATCGGCAGTAACGTTCGGGAAAAGGGAACTATGACAAATGTTTAGtaTCTGTGGTGAAATGCAAAATGCTGAGTTTGAGGGCTCCACCCAGGCTGGTTCCATGAGGACCCTGAAGCTGAGAGAACTGacccagcagagagagactgagctgGGAAAGACTGCTCTGACGATGgtccGTAGAGCAGCACTGCAGGCCCTCCTGGAGCATGAGAGACAGCAGTACGTCATAGAGCTCAACAGACTGGGCAAGACCATCTACAAACAGAGAGTCTAGACTCTAGTCCCTACTAGACCCATAACAACACCAAAGACCATCTGAAGTTTATGCTGAAAGCCATCTAGCAGCTAGGATGTGTGAACAAATATAGAATACTTTGAAGTATTAATGTGAAAACATTTACTCACAGCCATCTACAAGCACC
>TU251237
TGATAGAGGACCAGGGAAGCTGGAGAGTTCCTCTTGGAGTCATTTGACTGATGTTGGTGTTGAAATTTCCCTTTGAGATTTCACGTCCCATTATTTGGCATAGTCCCCTGGCAATCTGCTGCACTCCTCCTGTTCGTATCATGATGACAATGCTGGGGTAAGATTGCCAAGCCCTATTCTGATGTAACTACAAGTAAATTAGCTAATGtaacctagctaacgttatctactGTAACGTTACGGTTACTACTAGTTAGTCCTTTAGCTTTACTGACTAATGGCTGAGGTATGATAGCAATACACATTCAGAATCAAACCTAACATCGCACTATAACGTTCTACTGTAACAAACTAACAACAGGAAGATAAATACGGAGCTTTTGTCAATTTTGTCTCGCCTCTGGTTTTTGCCGGTAGAATGACTTTCATGTGTATCTAACCGCCCCATGTAACCACTTCCTGCACAAGGAACGGCGACGGGCAACACGCGTCATGCTGGTCATGTGATCTGTATCGTTCAATGTAATTGGCAGCGAAGGAAGGATATTTCCGGCTACataggttagttaccatgccAACGTAGACAGACTCGCCTCCATCCTTTGAGACGCTGACATGTTTTTAACCATTTATTCGTTTATTGTGCAGTCTTTGATAAAGCAAGATACTGGTGACTATTTACTTCAAATAAACTGCCAGCAGGATGTTTGGTTGTGAGGAACGACGTTCCAAAAACAAACTTGTGCAGAGGACGAGAGACAGAATCAAGtaTCTGTGGTGAAATGCAAAATGCTGAGTTTGAGGGCTCCACCCAGGCTGGTTCCATGAGGACCCTGAAGCTGAGAGAACTGacccagcagagagagactgagctgGGAAAGACTGCTCTGACGATGgtccGTAGAGCAGCACTGCAGGCCCTCCTGGAGCATGAGAGACAGCAGTACGTCATAGAGCTCAACAGACTGGGCAAGACCATCTACAAACAGAGAGTCTAGACTCTAGTCCCTACTAGACCCATAACAACACCAAAGACCATCTGAAGTTTATGCTGAAAGCCATCTAGCAGCTAGGATGTGTGAACAAATATAGAATACTTTGAAGTATTAATGTGAAAACATTTACTCACAGCCATCTACAAGCACC
>TU251238
TGACAACAGAACAGCATGACACGGCAGAAACATCCAGAACGAAAAACATTACTGCACAGATGACAATGCACATTGTGGGAAAAAAATAATGTTTCTATCGGCAGTAACGTTCGGGAAAAGGGAACTATGACAAATGTTTAGCAGGATGTTTGGTTGTGAGGAACGACGTTCCAAAAACAAACTTGTGCAGAGGACGAGAGACAGAATCAAGGTAAGCATGTCACTACTAAGCAACACACAGacaaaaaagtggtcagatacctatagctaagtggatggaaatGTGTTATGGTCTGCATTTCCCCTCTTTTATAGAAAGATGGCGAGATGACGAACCGCATTGCAGAGCTGGACAGGAGTGTAAACTATTCAGTTCTGTACTGTTGGGCTAATTGTAACTGCAACGTTTGATACGTTTTCCCTGAAATATCTTGagttacctctccctctctttctcagtaTCTGTGGTGAAATGCAAAATGCTGAGTTTGAGGGCTCCACCCAGGCTGGTTCCATGAGGACCCTGAAGCTGAGAGAACTGacccagcagagagagactgagctgGGAAAGACTGCTCTGACGATGgtccGTAGAGCAGCACTGCAGGCCCTCCTGGAGCATGAGAGACAGCAGTACGTCATAGAGCTCAACAGACTGGGCAAGACCATCTACAAACAGAGAGTCTAGACTCTAGTCCCTACTAGACCCATAACAACACCAAAGACCATCTGAAGTTTATGCTGAAAGCCATCTAGCAGCTAGGATGTGTGAACAAATATAGAATACTTTGAAGTATTAATGTGAAAACATTTACTCACAGCCATCTACAAGCACC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002471278.2 False 709 mRNA 0.43 3 6988898 6992999
XM_021588793.2 False 637 mRNA 0.43 3 6988898 6993841
XR_002471280.2 False 711 mRNA 0.43 4 6988898 6993845
TU251236 False 518 TUCP 0.40 3 6988982 6993806
TU251237 False 1146 TUCP 0.44 3 6988982 6993520
TU251238 True 836 TUCP 0.57 3 6988982 6993806

Neighbor

gene id symbol gene type direction distance location
zgc:174935 LOC106605997 coding downstream 9709 6976163 ~ 6979189 (-)
LOC118944481 LOC106575260 coding downstream 35024 6953156 ~ 6953874 (-)
LOC118964351 LOC106605995 coding downstream 36529 6948445 ~ 6952369 (-)
LOC110508304 gtpbp10 coding downstream 56237 6929457 ~ 6932661 (-)
LOC110508277 cld12 coding downstream 83612 6901478 ~ 6905286 (-)
il6r il6ra coding upstream 214076 7158585 ~ 7220080 (-)
LOC110520786 atp8b2 coding upstream 228151 7221996 ~ 7320978 (-)
LOC118945273 NA coding upstream 230281 7224126 ~ 7226076 (-)
LOC110536068 LOC106595411 coding upstream 329191 7323036 ~ 7343283 (-)
LOC110537383 LOC105024478 coding upstream 371572 7365417 ~ 7394499 (-)
G220217 NA non-coding downstream 25 6988327 ~ 6988873 (-)
G220218 NA non-coding downstream 646 6987369 ~ 6988252 (-)
G220208 NA non-coding downstream 6801 6959523 ~ 6982097 (-)
G220201 NA non-coding downstream 36910 6951522 ~ 6951988 (-)
G220194 NA non-coding downstream 48376 6940100 ~ 6940522 (-)
G220222 NA non-coding upstream 6587 7000432 ~ 7001479 (-)
G220226 NA non-coding upstream 22650 7016495 ~ 7016709 (-)
G220229 LOC100135938 non-coding upstream 26131 7019976 ~ 7061831 (-)
G220253 LOC106575371 non-coding upstream 79297 7073142 ~ 7073570 (-)
G220241 NA non-coding upstream 87978 7081823 ~ 7084303 (-)
G220209 LOC105030512 other downstream 18398 6967081 ~ 6970500 (-)
G220202 LOC106605995 other downstream 35935 6952559 ~ 6952963 (-)
LOC110507902 LOC106593870 other downstream 497883 6479543 ~ 6491729 (-)
G220242 LOC100194679 other upstream 88900 7082745 ~ 7083691 (-)
G220261 NA other upstream 105493 7099338 ~ 7100170 (-)
G220751 NA other upstream 182547 7176392 ~ 7201421 (-)
LOC110520792 LOC106575505 other upstream 434825 7408252 ~ 7436195 (-)

Expression


Co-expression Network