LOC100135938 (LOC106575366)


Basic Information

Item Value
gene id LOC100135938
gene name LOC106575366
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7046735 ~ 7061832 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967289.1
AGCTCTCACACACTCATTCTCTGTTTCATACCACTCCATAAGGACATAACGGTTTGAAAAGAAGGGATTCCAGCTGTCGTTTGTCAAGTCGTTTCCTGAACTTGGCGTGGCTTTGGAACAACTTTGCTAAACACAGGGAAAGAGAGTGGGGGGTGAAAGAGGGCAAAACAGAGGGAGTTGAAACAGTCCAGTGGAAGAGGACAAGGATAACTCCCGTATCAGTACTCAAAATGGGTTGGTCTTGGGTTCTAGCGTGCTGGTGTGCATTAGTGCTGGTGTGCTCGTCTGAAGATAACAGATCCCTTCCTGGCATGTTACAGAGAGAGGCCTCCTTTGACATAGAGGATTTCCTGCAAAGGGAGATCACCCAGTACCCGGACACAGACTTTACACCTGGAGTTCGGCCAATGGCTGGGCCTCGCTCGGTTGGGGAGTCCTACCCCAGTGTCCTCTTCCCCCCTGGCCGGCCCTCCCATAAAAACCTCCAGGCCATCTGTCTCCATAGCAGCCATCGTCCGCGGTACccttcctactccctcccccGCAACGGCGGAGGCCACTTTCGTCGTCGAGCTGAAGCAGTCAACCGGGTAGAGTCCTGGTACAGCGCATGTTGCCATGGGAACGggaaacagcaggtccaggaaGTGACGCTGTGCTGCGTTACACAGGCGTGGGAACAGACCCTGTCCACATTCTGTACTGAGGAGTCCGGAGTGAAGACACGCCATCACCACTGCTGCCAGAAGGAGGGCGGGGCCAGACTGAGCTGTTTCCATAGGGAAAACCCAGACCCCACCTACCTGCCGACCACCCCCATACCTGAACCTGGCTTCACCTTTAACCCCAACACTTGTCACaaGTCCCAGCCTGGTCCATGTGCTGTCAGAGGAGAGAAGCACAAGAGCCCCCAAGCTACTCCCAGAGACTCTGACATCAGTTTCCCCCCTGGACGCCCCACTTTCGACAACATTGGATTGGTCTGCTGCCTACACAACAGCCGACCCCTCTCCACCACCAAGTGCCTGCCACGTACAGGCTTTGGCTGGCTGGCCCGCCAATCAAAGGCCATGAACCGCCTGGAGAGAGGGTTCAACCACTGCTGTAAGGGACTGGAGAACGTGCTACCCTGTGCTGAGGGAAAgTGGCGTGAGGAGCTTGACAGGTTCTGTGAGGAAGAGCAGAAGGGGAGGCCTCACAACTCCTCCTGTTGTGATGTgggagaaggtgaggacaggTATACCTGTTTCTCCTCACTCGCCCCTCATCCAGACTATGAACAAAAGCTTGACTCTGCTTCTGACGCACCACAGACCCACAACCTCGGACACATCTGTGAAACATACAAGATCATCAAGATGTAAGGGTTTGTTTAGGTttattgtgtgtgtgtgtgtgtgtgtgtgtttaattgtACCTTTTTCCTCCTCAGTCACATTTTTATGCTGCCCAGCCCGATTGTTTATCTTTCTGGGTGACAGAACCAGACCTTTCAGAAAGGGTACATTTCACTGTAGTAGATGGTGACTGTAGCTATGTTTCCATCCGACTGGCGACAGATTTTAAATTTGCGCATTTTCCCAaaagtggtgtgtttccaccaaaatGACTTGTTGCTGATTTTTGTAGTGCACACGaaatttatttttttcttcattttattgaataaaaatctaaagttcagAAACGGTTGTTATAAATAGTAAATGTGCcaactctggtcttggcacattcgctctagccaacagctagcagatacagtgtgggtaagctagtctacatgatgagatttaTTATGGATAACAGCGACcagtattacattttttaaatggcagtcaagcatcaaTCATAATGTCACCAGAATAAAACCTTCGATATTTACTGGAAAGGAGCATCACTGTGCAtcttcaccaccctgtgaagttcatcataacttgtttcatctgtagcctaataaactgcatagtttcctgagtcgtagtggaaggaccacacaccatattaTCGAGTGACTGCAAGTTTACGtggatatgatggttattatatcaatagtTGCGCATAAAGGaatttccaccgccatttctcacATAACTCATTTTACAGAc
>XM_021588832.2
AGCTCTCACACACTCATTCTCTGTTTCATACCACTCCATAAGGACATAACGGTTTGAAAAGAAGGGATTCCAGCTGTCGTTTGTCAAGTCGTTTCCTGAACTTGGCGTGGCTTTGGAACAACTTTGCTAAACACAGGGAAAGAGAGTGGGGGGTGAAAGAGGGCAAAACAGAGGGAGTTGAAACAGTCCAGTGGAAGAGGACAAGGATAACTCCCGTATCAGTACTCAAAATGGGTTGGTCTTGGGTTCTAGCGTGCTGGTGTGCATTAGTGCTGGTGTGCTCGTCTGAAGATAACAGATCCCTTCCTGGCATGTTACAGAGAGAGGCCTCCTTTGACATAGAGGATTTCCTGCAAAGGGAGATCACCCAGTACCCGGACACAGACTTTACACCTGGAGTTCGGCCAATGGCTGGGCCTCGCTCGGTTGGGGAGTCCTACCCCAGTGTCCTCTTCCCCCCTGGCCGGCCCTCCCATAAAAACCTCCAGGCCATCTGTCTCCATAGCAGCCATCGTCCGCGGTACccttcctactccctcccccGCAACGGCGGAGGCCACTTTCGTCGTCGAGCTGAAGCAGTCAACCGGGTAGAGTCCTGGTACAGCGCATGTTGCCATGGGAACGggaaacagcaggtccaggaaGTGACGCTGTGCTGCGTTACACAGGCGTGGGAACAGACCCTGTCCACATTCTGTACTGAGGAGTCCGGAGTGAAGACACGCCATCACCACTGCTGCCAGAAGGAGGGCGGGGCCAGACTGAGCTGTTTCCATAGGGAAAACCCAGACCCCACCTACCTGCCGACCACCCCCATACCTGAACCTGGCTTCACCTTTAACCCCAACACTTGTCACaaGTCCCAGCCTGGTCCATGTGCTGTCAGAGGAGAGAAGCACAAGAGCCCCCAAGCTACTCCCAGAGACTCTGACATCAGTTTCCCCCCTGGACGCCCCACTTTCGACAACATTGGATTGGTCTGCTGCCTACACAACAGCCGACCCCTCTCCACCACCAAGTGCCTGCCACGTACAGGCTTTGGCTGGCTGGCCCGCCAATCAAAGGCCATGAACCGCCTGGAGAGAGGGTTCAACCACTGCTGTAAGGGACTGGAGAACGTGCTACCCTGTGCTGAGGGAAAgTGGCGTGAGGAGCTTGACAGGTTCTGTGAGGAAGAGCAGAAGGGGAGGCCTCACAACTCCTCCTGTTGTGATGTgggagaaggtgaggacaggTATACCTGTTTCTCCTCACTCGCCCCTCATCCAGACTATGAACAAAAGCTTGACTCTGCTTCTGACGCACCACAGACCCACAACCTCGGACACATCTGTGAAACATACAAGATCATCAAGATCTTCCCTGTGGCTCTCCCTGTCCAGAACTTAGTGGACCAATGCTGCTCCCTGCCAGCAGACCAGAGAACTGCATGTGTTCAGATACAGCTAGTGATGCTGTCGCAGACACGCTGTCTTGAGGGGaagccctcctcttcctctgtcttgCAGAAGTcctgccctccctcctccttctcccaggACTCCCCTATGTGCCTCTCCAGACTGCTCATGAATGCCATCACCAAGGCAACCAAGTCCCCACACCTCAGAAAGAGGAAATTCCTCCTCACCTGATTTTGGTTTTACTCTGATGGCAGTGGGCCAATCCGAATTAGCGGTCAGGGCATTTCTGCAGTAGTCACTAGATAACCATGCCAGAAAGGATACAATTGGCTAATACAGAAGAACTGTTGAGCAAGTGCATGATTTAGTCAAACAGGAGTTAGGATGTGGGTAAGAGTAAGCAGAATTTATAGTTAGAAAGTTCCATTTATTCCATATTGTCTAGCATGGCCAGATGACAACCAATTAATGTATGGTATCCGAGTGCACATAATATTTCAGTATTACTGTCAGTGTCTGTCATTAAGAGGGTGTTATAATGTTAGAACACCTGGAGAGCTGATATGAATATAAAAAAGAAGTGGTAATTCAAATGGTGATTTGTTTCGTAAAGCAGATATGTTTCAGAATTGTTAGTTGTATTTTTCATATAGCTCCAGAACTGCTAGTCCAGTTGTCCTGTTCTATTTCTAACATTTGAAATAAATCTTTATAGAATATGTCTTAATCATTTTGGAGTGAAGCACTGCCAGTTATTGTAATTTGTCATTATCTGACACATGAACAACATTGAAATGATTATTTGAATAAACTGAAATGTTGATGGAA
>XM_021588840.2
GCTCTCACACACTCATTCTCTGTTTCATACCACTCCATAAGGACATAACGGTTTGAAAAGAAGGGATTCCAGCTGTCGTTTGTCAAGTCGTTTCCTGAACTTGGCGTGGCTTTGGAACAACTTTGCTAAACACAGGGAAAGAGAGTGGGGGGTGAAAGAGGGCAAAACAGAGGGAGTTGAAACAGTCCAGTGGAAGAGGACAAGGATAACTCCCGTATCAGTACTCAAAATGGGTTGGTCTTGGGTTCTAGCGTGCTGGTGTGCATTAGTGCTGGTGTGCTCGTCTGAAGGGGAGATCACCCAGTACCCGGACACAGACTTTACACCTGGAGTTCGGCCAATGGCTGGGCCTCGCTCGGTTGGGGAGTCCTACCCCAGTGTCCTCTTCCCCCCTGGCCGGCCCTCCCATAAAAACCTCCAGGCCATCTGTCTCCATAGCAGCCATCGTCCGCGGTACccttcctactccctcccccGCAACGGCGGAGGCCACTTTCGTCGTCGAGCTGAAGCAGTCAACCGGGTAGAGTCCTGGTACAGCGCATGTTGCCATGGGAACGggaaacagcaggtccaggaaGTGACGCTGTGCTGCGTTACACAGGCGTGGGAACAGACCCTGTCCACATTCTGTACTGAGGAGTCCGGAGTGAAGACACGCCATCACCACTGCTGCCAGAAGGAGGGCGGGGCCAGACTGAGCTGTTTCCATAGGGAAAACCCAGACCCCACCTACCTGCCGACCACCCCCATACCTGAACCTGGCTTCACCTTTAACCCCAACACTTGTCACaaGTCCCAGCCTGGTCCATGTGCTGTCAGAGGAGAGAAGCACAAGAGCCCCCAAGCTACTCCCAGAGACTCTGACATCAGTTTCCCCCCTGGACGCCCCACTTTCGACAACATTGGATTGGTCTGCTGCCTACACAACAGCCGACCCCTCTCCACCACCAAGTGCCTGCCACGTACAGGCTTTGGCTGGCTGGCCCGCCAATCAAAGGCCATGAACCGCCTGGAGAGAGGGTTCAACCACTGCTGTAAGGGACTGGAGAACGTGCTACCCTGTGCTGAGGGAAAgTGGCGTGAGGAGCTTGACAGGTTCTGTGAGGAAGAGCAGAAGGGGAGGCCTCACAACTCCTCCTGTTGTGATGTgggagaaggtgaggacaggTATACCTGTTTCTCCTCACTCGCCCCTCATCCAGACTATGAACAAAAGCTTGACTCTGCTTCTGACGCACCACAGACCCACAACCTCGGACACATCTGTGAAACATACAAGATCATCAAGATCTTCCCTGTGGCTCTCCCTGTCCAGAACTTAGTGGACCAATGCTGCTCCCTGCCAGCAGACCAGAGAACTGCATGTGTTCAGATACAGCTAGTGATGCTGTCGCAGACACGCTGTCTTGAGGGGaagccctcctcttcctctgtcttgCAGAAGTcctgccctccctcctccttctcccaggACTCCCCTATGTGCCTCTCCAGACTGCTCATGAATGCCATCACCAAGGCAACCAAGTCCCCACACCTCAGAAAGAGGAAATTCCTCCTCACCTGATTTTGGTTTTACTCTGATGGCAGTGGGCCAATCCGAATTAGCGGTCAGGGCATTTCTGCAGTAGTCACTAGATAACCATGCCAGAAAGGATACAATTGGCTAATACAGAAGAACTGTTGAGCAAGTGCATGATTTAGTCAAACAGGAGTTAGGATGTGGGTAAGAGTAAGCAGAATTTATAGTTAGAAAGTTCCATTTATTCCATATTGTCTAGCATGGCCAGATGACAACCAATTAATGTATGGTATCCGAGTGCACATAATATTTCAGTATTACTGTCAGTGTCTGTCATTAAGAGGGTGTTATAATGTTAGAACACCTGGAGAGCTGATATGAATATAAAAAAGAAGTGGTAATTCAAATGGTGATTTGTTTCGTAAAGCAGATATGTTTCAGAATTGTTAGTTGTATTTTTCATATAGCTCCAGAACTGCTAGTCCAGTTGTCCTGTTCTATTTCTAACATTTGAAATAAATCTTTATAGAATATGTCTTAATCATTTTGGAGTGAAGCACTGCCAGTTATTGTAATTTGTCATTATCTGACACATGAACAACATTGAAATGATTATTTGAATAAACTGAAATGTTGATGGAA

Function

NR:

description
extracellular matrix protein 1 isoform X2

GO:

id name namespace
GO:0005615 extracellular space cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967289.1 False 2105 mRNA 0.49 7 7046735 7060355
XM_021588832.2 False 2234 mRNA 0.50 8 7046735 7061832
XM_021588840.2 True 2167 mRNA 0.50 7 7046736 7061832

Neighbor

gene id symbol gene type direction distance location
LOC110520784 LOC106575322 coding upstream 1519 7016691 ~ 7045216 (+)
them4 LOC106592246 coding upstream 50311 6993067 ~ 6996424 (+)
LOC110508323 LOC106575347 coding upstream 58968 6979131 ~ 6988449 (+)
LOC110520781 osgin2 coding upstream 98759 6937600 ~ 6947976 (+)
LOC110508266 LOC106511201 coding upstream 117335 6828683 ~ 6929400 (+)
LOC110508369 LOC106575371 coding downstream 1786 7063618 ~ 7079482 (+)
LOC110508390 LOC100194679 coding downstream 18618 7080450 ~ 7084314 (+)
LOC110508380 LOC105029226 coding downstream 22774 7084606 ~ 7098905 (+)
LOC110508400 NA coding downstream 48150 7109982 ~ 7113781 (+)
LOC110508415 LOC106605928 coding downstream 100118 7161950 ~ 7170443 (+)
G220125 NA non-coding upstream 69268 6977004 ~ 6977467 (+)
G220134 NA non-coding upstream 91996 6954149 ~ 6954739 (+)
G220178 NA non-coding downstream 17848 7079680 ~ 7079902 (+)
G220184 NA non-coding downstream 40466 7102298 ~ 7103268 (+)
G220185 NA non-coding downstream 41923 7103755 ~ 7103963 (+)
G220186 NA non-coding downstream 42856 7104688 ~ 7104965 (+)
G220189 NA non-coding downstream 46133 7107965 ~ 7108182 (+)
LOC110507732 LOC106576036 other upstream 239065 6794547 ~ 6811294 (+)
G218971 NA other upstream 327572 6717628 ~ 6719163 (+)
LOC110507851 acbd7 other upstream 415134 6624575 ~ 6631601 (+)
LOC110536044 LOC106575458 other downstream 286460 7348131 ~ 7357408 (+)
G220435 NA other downstream 297836 7359668 ~ 7365285 (+)
G220445 LOC106575489 other downstream 316426 7378258 ~ 7381563 (+)
LOC118945274 LOC106575512 other downstream 384537 7437011 ~ 7447882 (+)
LOC110520790 LOC106606111 other downstream 1108875 8170634 ~ 8178058 (+)

Expression


Co-expression Network