LOC110508390 (LOC100194679)


Basic Information

Item Value
gene id LOC110508390
gene name LOC100194679
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7080450 ~ 7084314 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588903.2
taaggtgccaccaacctcctgtggtgtacgTGTAAGTCATTGTCAACAAATATATGCGCAGGTATATTGGGGCTGAACTGCATTTCCCATCAGTTCTGGTGACGTAGATAGCAACAAGAAGATTCCAAGATGGGGCTCGAAAGTACTATGGTCTGTGTGGACAACAGTGAGTATATGAGGAATGGAGACTTCCTCCCCACCAGACTTCAGGCCCAGCAAGATGCTGTCAACATTGTGTGCCACTCCAAGACGCGCAGCAACCCTGAGAACAATGTGGGCCTCATCACCATGGCCAATAACTGTGAGGTGCTGACCACATTGACTGCAGACGCGGGGAGGATACTGTCTAAACTGCACGCTGTCCAGCCCCGTGGAAACATCAGCTTCTGCACAGGCATCAGAGTGGCTCATttgGCTCTGAAGCACAGACAGGGGAAGAACCACAAGATGCGTATAATTGCCTTTGTGGGCAGCCCAGTGGAGGACAACGAGAAGGATCTGGTGAAAATGGCAAAGCGTCTAAAGAAAGAGAAAGTCAGTGTGGACATCATTAACTTTGGAGAGGAGGAGGTGAACACAGAAAAGCTGACGGCCTTCATCAACACTCTGAATGGGAAGGAAGGAGCAGGGTCCCACCTTGTGACAGTGCCTCCAGGCCCCAGTCTGGCTGAtgccctactgtcctctcctatcCTTGCTGGGGAGGGAGGAGCCATGCTGGGCCTGGGGTCCAGTGACTTTGAGTTTGGAGTGGACCCCAGTGCAGACCCAGAGCTGGCACTGGCTCTGAGGGTGTCTATGGAGGAGCAGAGACAAAGGCAGGAGGATGAGACTCGCAGGGCAGCAGTGGTGTCTGCTGCTGAGGCCGGGGTTCCCTCGCCTACCGCTGACGAGTCAGACGAAGCTCTGCTGAAGATGTCAGTCCCCCAGGCTGACACGGCCACGCCCGCTATGCCCGACTTCAGCCGCATGACGGAGGACGAGCAGATTGCCTATGCTCTACAGATGTCCATGCAGGGTGGAGAGTTTGGTGCAGAGTCAATGGACATGGACACAGGAGCCCCTGTAGACTCAGAGGGTGCTAAGGATGAGGAGGACTATGATGTGATGCAGGACCCAGAGTTCCTCCAGAGCGTCCTGGAGAACCTACCGGGTGTCGACCCCAACAACGAGGCCATCCGGAATGCCATGGGCTCGCTGGCCTCACAGACAGGATCCAAACCTGACAGCAAGAAAGACAAAGACGATGAGAAGAAGAAATGAACATTTACACAGTAAACATAATCGATACCCTGGCGTTGACCTGTTGACAATGGCTCCTTTTAATATAATAGTTGTGCAAACTGTAACCTCAAATTACCTCTAGGTTTTTTTTGTATCGCCATACTCAAAACAGTTGAACAGGGCTTTCTTTATCTTTGTTGTGTCAAGGTTAATGATGATGCAtgttgcctttaaaaaaaatattaaaaagttTGTACTAAAGTGGGACCTTATATCAACCCAAGCACATTCAGTAAGTGTACATTTATGTgctgataataataaatacatttacataaatcAAGAGAA
>XM_021588897.2
taaggtgccaccaacctcctgtggtgtacgTGTAAGTCATTGTCAACAAATATATGCGCAGGTATATTGGGGCTGAACTGCATTTCCCATCAGTTCTGGTGACGTAGATAGCAACAAGAAGATTCCAAGATGGGGCTCGAAAGTACTATGGTCTGTGTGGACAACAGTGAGTATATGAGGAATGGAGACTTCCTCCCCACCAGACTTCAGGCCCAGCAAGATGCTGTCAACATTGTGTGCCACTCCAAGACGCGCAGCAACCCTGAGAACAATGTGGGCCTCATCACCATGGCCAATAACTGTGAGGTGCTGACCACATTGACTGCAGACGCGGGGAGGATACTGTCTAAACTGCACGCTGTCCAGCCCCGTGGAAACATCAGCTTCTGCACAGGCATCAGAGTGGCTCATttgGCTCTGAAGCACAGACAGGGGAAGAACCACAAGATGCGTATAATTGCCTTTGTGGGCAGCCCAGTGGAGGACAACGAGAAGGATCTGGTGAAAATGGCAAAGCGTCTAAAGAAAGAGAAAGTCAGTGTGGACATCATTAACTTTGGAGAGGAGGAGGTGAACACAGAAAAGCTGACGGCCTTCATCAACACTCTGAATGGGAAGGAAGGAGCAGGGTCCCACCTTGTGACAGTGCCTCCAGGCCCCAGTCTGGCTGAtgccctactgtcctctcctatcCTTGCTGGGGAGGGAGGAGCCATGCTGGGCCTGGGGTCCAGTGACTTTGAGTTTGGAGTGGACCCCAGTGCAGACCCAGAGCTGGCACTGGCTCTGAGGGTGTCTATGGAGGAGCAGAGACAAAGGCAGGAGGATGAGACTCGCAGGGCAGCAGTGGTGTCTGCTGCTGAGGCCGGGGTTCCCTCGCCTACCGCTGACGAGTCAGACGAAGCTCTGCTGAAGATGTCAGTCCCCCAGGCTGACACGGCCACGCCCGCTATGCCCGACTTCAGCCGCATGACGGAGGACGAGCAGATTGCCTATGCTCTACAGATGTCCATGCAGGGTGGAGCAGAGTTTGGTGCAGAGTCAATGGACATGGACACAGGAGCCCCTGTAGACTCAGAGGGTGCTAAGGATGAGGAGGACTATGATGTGATGCAGGACCCAGAGTTCCTCCAGAGCGTCCTGGAGAACCTACCGGGTGTCGACCCCAACAACGAGGCCATCCGGAATGCCATGGGCTCGCTGGCCTCACAGACAGGATCCAAACCTGACAGCAAGAAAGACAAAGACGATGAGAAGAAGAAATGAACATTTACACAGTAAACATAATCGATACCCTGGCGTTGACCTGTTGACAATGGCTCCTTTTAATATAATAGTTGTGCAAACTGTAACCTCAAATTACCTCTAGGTTTTTTTTGTATCGCCATACTCAAAACAGTTGAACAGGGCTTTCTTTATCTTTGTTGTGTCAAGGTTAATGATGATGCAtgttgcctttaaaaaaaatattaaaaagttTGTACTAAAGTGGGACCTTATATCAACCCAAGCACATTCAGTAAGTGTACATTTATGTgctgataataataaatacatttacataaatcAAGAGAACACCTCA

Function

NR:

description
PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 isoform X1

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0008540 proteasome regulatory particle, base subcomplex cellular_component

KEGG:

id description
K03029 PSMD4, RPN10; 26S proteasome regulatory subunit N10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588903.2 False 1572 mRNA 0.50 10 7080450 7084307
XM_021588897.2 True 1582 mRNA 0.50 10 7080450 7084314

Neighbor

gene id symbol gene type direction distance location
LOC110508369 LOC106575371 coding upstream 968 7063618 ~ 7079482 (+)
LOC100135938 LOC106575366 coding upstream 18618 7046735 ~ 7061832 (+)
LOC110520784 LOC106575322 coding upstream 35234 7016691 ~ 7045216 (+)
them4 LOC106592246 coding upstream 84026 6993067 ~ 6996424 (+)
LOC110508323 LOC106575347 coding upstream 92683 6979131 ~ 6988449 (+)
LOC110508380 LOC105029226 coding downstream 292 7084606 ~ 7098905 (+)
LOC110508400 NA coding downstream 25668 7109982 ~ 7113781 (+)
LOC110508415 LOC106605928 coding downstream 77636 7161950 ~ 7170443 (+)
LOC110536044 LOC106575458 coding downstream 263817 7348131 ~ 7357408 (+)
LOC118945274 LOC106575512 coding downstream 352697 7437011 ~ 7447882 (+)
G220178 NA non-coding upstream 548 7079680 ~ 7079902 (+)
G220125 NA non-coding upstream 102983 6977004 ~ 6977467 (+)
G220134 NA non-coding upstream 125711 6954149 ~ 6954739 (+)
G220184 NA non-coding downstream 17984 7102298 ~ 7103268 (+)
G220185 NA non-coding downstream 19441 7103755 ~ 7103963 (+)
G220186 NA non-coding downstream 20374 7104688 ~ 7104965 (+)
G220189 NA non-coding downstream 23651 7107965 ~ 7108182 (+)
LOC110520781 osgin2 other upstream 135471 6937600 ~ 6947976 (+)
LOC110507732 LOC106576036 other upstream 272780 6794547 ~ 6811294 (+)
G218971 NA other upstream 361287 6717628 ~ 6719163 (+)
LOC110507851 acbd7 other upstream 448849 6624575 ~ 6631601 (+)
G220435 NA other downstream 275354 7359668 ~ 7365285 (+)
G220445 LOC106575489 other downstream 293944 7378258 ~ 7381563 (+)
LOC110520790 LOC106606111 other downstream 1086393 8170634 ~ 8178058 (+)

Expression


Co-expression Network