LOC110508415 (LOC106605928)


Basic Information

Item Value
gene id LOC110508415
gene name LOC106605928
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7161950 ~ 7170443 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967358.1
GTTAAATGTCCCTTCAATTGCAGGCGCCTCTGAGCCACAAAAATGTGTAGAGATCGATTCGTATCAGTCCTCAAATGGCGCCGCTGACGTTATGCAGCATTTTGGGCACTAGAGCTCTCTATACATCTCTACGCTCTGAGCGGCACACCTGCAACCAATTTTATATTTTAGTTCTGTGCCATACAATCCAGGCAGTTTTAAAGAACCTCTCTACCTTTATCTGTGCGTCCAATACTCGAACTAACATCCAAACATGAGTGGGGCGATACATCCAATCTGCCTGGCTCTGtgtctggctggctgggctgTATCTGGTGCTTCTGTTGAAGCTCAGAAGACCTCCCCAGTCTGTTACCTCTGTAACCATGATAACTGCCCAACCGTTGAGTATGTTTATGACCATTTTACTGCTAATTTGACTCTGTGGTCGCGAGGTAAAATGGTGGACCTCCCTCCCTGCCCCACCCACTCCCCTCTGTCATCTGGAGGATGCTTGGTGTGTGTTGACAACCAGAAGATCTACGCTGTGTGTGACTCAGAGATCATCAAGCCAGTCTTTGAGGGCCAAGGCAACTCCATGCCTATCATCAAAGCCAATTGCAAAAGCATTGTTTCAACTGATTGGACGGATCCAAATGTCCCCACTTCCACCCCTGGTGGTACTGGGAGGTTATCTAAGGAAGAAGAGATCACTATTGGCATTTTAGCTGCTACCCTCTCCTTCCTTGCCATCCTCGGCATTGTTGCTTGGCGCTACAAGGACCAGATTAAGTGTCTTCCAGTGGCCCTTCCAGCGGTCAAATCAGGGGAACCCCAGTGTTATCCAAATGAACTGAAGAAAGAGTTTGATACCATCAGCCGAGGAATAGTTGGACCTGCAGGGAATAGGGGTGTGCCAAGATTTGAATCTCATTTACATTTACCCTGTTTAGAAATGTATTGGATATGTCCTATTTAAACCTATGGTGTGTATTTAATCTGCAACCAGTGTTCTCTTAGGTTCAGATGACCTTCAGCTCTATCAGCCAGGTGGCTGTGTAGCTGTAACACTGTCTCCCCATCACGTCGGGTTGTTAGTTTAAAAGCTTTAACTCTGCACATTTACAACAGGCAAGTTTTTAAAAACAGTGCTTCAAACTAATCATGGTCTAGATTGAAGACCATTAATAGTCAGTTGAATCAGTTGTGCTATAGATTGTTTACCTAAGCAGCCCATATATTTATCCCAGATTGTGAATACAATAAGGCATTATGTCATACTGGAGTCAGGGAGGTAAACAGGAAAGCTCTTGTTCTGTTTTGGTATTAACTGTTCATATCCATAGTGACCCACTTGAAACAAATAGACATTTCTGTATCTAGGTTTGGTGTAATTGACCTGATTTGTAAATCGACCTGTACAGTTGCTCTGTGTTTGGCTGAGAGACTGCTGTGGGAACAACCATGACACAGAAAACTGGATTAAAAGTTGAAATGCTTTCA
>TU251361
GGCGCCGCTGACGTTATGCAGCATTTTGGGCACTAGAGCTCTCTATACATCTCTACGCTCTGAGCGGCACACCTGCAACCAATTTTATATTTTAGTTCTGTGCCATACAATCCAGGCAGTTTTAAAGAACCTCTCTACCTTTATCTGTGCGTCCAATACTCGAACTAACATCCAAACATGAGTGGGGCGATACATCCAATCTGCCTGGCTCTGtgtctggctggctgggctgTATCTGGTGCTTCTGTTGAAGCTCAGAAGACCTCCCCAGTCTGTTACCTCTGTAACCATGATAACTGCCCAACCGTTGAGTATGTTTATGACCATTTTACTGCTAATTTGACTCTGTGGTCGCGAGGTAAAATGGTGGACCTCCCTCCCTGCCCCACCCACTCCCC

Function

NR:

description
uncharacterized protein LOC109905840

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967358.1 False 1482 mRNA 0.44 7 7161950 7170443
TU251361 True 398 lncRNA 0.49 4 7162026 7168752

Neighbor

gene id symbol gene type direction distance location
LOC110508400 NA coding upstream 48169 7109982 ~ 7113781 (+)
LOC110508380 LOC105029226 coding upstream 63045 7084606 ~ 7098905 (+)
LOC110508390 LOC100194679 coding upstream 77636 7080450 ~ 7084314 (+)
LOC110508369 LOC106575371 coding upstream 82468 7063618 ~ 7079482 (+)
LOC100135938 LOC106575366 coding upstream 100118 7046735 ~ 7061832 (+)
LOC110536044 LOC106575458 coding downstream 177688 7348131 ~ 7357408 (+)
LOC118945274 LOC106575512 coding downstream 266568 7437011 ~ 7447882 (+)
LOC110508431 LOC106575520 coding downstream 289997 7460440 ~ 7500537 (+)
LOC110508507 LOC106575080 coding downstream 447925 7618368 ~ 7627967 (+)
LOC110513974 efna3 coding downstream 770859 7941302 ~ 8086452 (+)
G220275 NA non-coding upstream 44195 7117487 ~ 7117755 (+)
G220273 NA non-coding upstream 45577 7116062 ~ 7116373 (+)
G220189 NA non-coding upstream 53768 7107965 ~ 7108182 (+)
G220186 NA non-coding upstream 56985 7104688 ~ 7104965 (+)
G220352 NA non-coding downstream 38679 7209122 ~ 7228957 (+)
G220355 NA non-coding downstream 57568 7228011 ~ 7228357 (+)
G220350 LOC106595355 non-coding downstream 57970 7228413 ~ 7237728 (+)
G220359 NA non-coding downstream 76019 7246462 ~ 7249188 (+)
G220361 NA non-coding downstream 79621 7250064 ~ 7251514 (+)
LOC110508323 LOC106575347 other upstream 175428 6979131 ~ 6988449 (+)
LOC110520781 osgin2 other upstream 216971 6937600 ~ 6947976 (+)
LOC110507732 LOC106576036 other upstream 354280 6794547 ~ 6811294 (+)
G218971 NA other upstream 442787 6717628 ~ 6719163 (+)
LOC110507851 acbd7 other upstream 530349 6624575 ~ 6631601 (+)
G220435 NA other downstream 189225 7359668 ~ 7365285 (+)
G220445 LOC106575489 other downstream 207815 7378258 ~ 7381563 (+)
LOC110520790 LOC106606111 other downstream 1000264 8170634 ~ 8178058 (+)

Expression


Co-expression Network