LOC110537383 (LOC105024478)


Basic Information

Item Value
gene id LOC110537383
gene name LOC105024478
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7365417 ~ 7394499 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040374.1
CTCCCTATTTTTTTGTTTCATGGAAGTCAATGAACCAAGAAGAATACCAGACCCAGCTGCTGTCGTATTGGTGTATATGGGAGAGCCACCCCCTTAAGTAGACAGGAACGGATCATTTTTTGTTCGATTGTTCACTCAGGATGTTAACCATCTTCAGCTATCCAACATCTTTGCTGCCTGTGCATTGAGGTCACGCGCATACATTCCTGGGGGAGGGCGGGAGTGGAGGGAACTGCCTGATGAAACGTTATCGACTGGTAGTGAAGAGCAGCGTCGACTATTGTTAAAATCAACCGTGATCTTCCGTCTGTGAGGGCGAGAGTGAGACAAGAGGACGAAAATCCGTGTTCCCTGTTTGTTTAGAGAAAATAATTATATATAAGCAACGTTGGACAACTCTTTCATATTTAAGCTATATAGTTATTTATCTATCTTATCTGTGTGAAGATGAACGGGGTAACGCGGAGTCTGTGTACATTTGAGGACCTCAGAGCTGATGAGAGAACAGCGGATGGGTGCAGGAGACTGAGGCTGACTCTCCACCAGCAGAACCAGGTCGGGAGGATCACAGAACAACCCAGGAGCAAGCCAATCGGACGAGCATTTGCTCTGGTGCAGCCAACCAGTGATAGGCCTGCTCTGAAGCCTGAACCAATCAAACCCTCTGAGGAGAAGACTGAAAAGGTTGAGGTCATCAAGGTGTATCTGGAGGATCGTAGACAGGAGCAGCAGAGACACCAGCAGAGCCTCAAGATGTTGTCAGATGAAGTCTCCCAGATACAGGAGGTGAGATACTGTCTGAAGACCCTGAGGGAACAGATGGCCACCAAGAACAAAGGACAACACAAGTTTCTTGCTAGTGGCTACGGAGTCAGCACTCCCTCCAATCAGAACATCTCTTCTTCCTCAAAGGGAGGAGCTAAAGATGATGGGCAGggaggggaggatgaggtGGAGAGGGACAAGATGAGGGAGGTCAGTAAGCGTCTGTATGCTCAGCTACAGGAGGCCGAGAAGAAACAccaggaggagagagcgagactgCAGGCTGAGGGTGTGGATCTGCGCCAGCGTCTGGGGGAGCAGGAGGAGAAGCtgaagggggtggaggagagtagTGAGAGGAAGGACCAGAGGATTGAGGAGCTCCAGAGGCTGCTGGGAGGCATGGCGCAGGAGAGCCAAGCCCTACGAGACACactgaggaacagagaggaggaactCAGAGAATTACGCAAGATCAGAGAGGAGGGCAGGAACgaggagcagagGTCAGAGCAGTTGGAGAAGGAGCTGGCCATTCTGAAGGAGAAGATCCATCATCTAGATGACATGCTGAAGAGCCAGCAGAGGAAAGTCAGACACATGATCGAACAGctgcAGAACTCTCGTATGGTGATCCAGGAGAGGGACCGTGTCATCAGAGATCTGGAGGAGAAGGTGGCTTTCCTGGAGGCAGAGaaccGGGAGATGCATGATCAGATGGACTACTTCCTGGGAGGTGAAAGGTCAAACTCGCACCTCTCATCAGACCGCCACGCCCAGATTGTCTACAGTAAGCCTTTGAAGCCCAGCAACTCGTCCAACAAGCCTCTTCCCTTCATCAAAATCATTGAGACCAAGTCCTGAACTGGTGAAAGCGAGGGAGAAGGTTAACCTAACGACACCAAACCTGCTAAGCTAAACAACAACGGACTGAAATAGACCACCACCACATTACTACCACACCAACATCACAATGCACGTATGAAGTTTAAACTGAGGTGACCACAACATCACATCAACTGACCACCAGCTATGACCATCACCCACCCATGGCCACACTCCTTCGATAGGAcactatgcagtgtgtgtgtgtcagaggaggctggtggaagaAACTATTTATTTATGAAGTGTCATGGTTTATACAAAGTTATGAAGGccatgtttgttattttgttcgttGAGAAAGTGGGATGTTTGGTCTAGTATGTGTGGATTAGAAGTCTTCCTCACCAATACTGATGTCACTTTAAAGTCTAAAGGAAATGAAGATGATTCATTCTGACAAGTACTTACTAACCTTGCAAGAAGTCTTGTTGACATGATCCACATTTTTGCATGCATTTCAGTTACCTGACGTTTCATCCACTATCACCAGCTTTGTACACAACTATATGTATTTGTTTATGTGGTATTCTTTGATGTCCCTGTAGTCTCACTCTGGGATTTGTTTGTTAATTTTATCCTTCAGACAGGAATGTTTGGCCTGACACTTAGTGTGTGACAATCATCTTTATGTATTTATGTGAAAATACAACTTTCATTTTAGGGAAACCATTTTCAGTAGACATTTTAGTGTGTGTTAACAACATATATActttgtgttttatttattttaataaatatataaaaac
>XM_036967433.1
ACTCCCTATTTTTTTGTTTCATGGAAGTCAATGAACCAAGAAGAATACCAGACCCAGCTGCTGTCGTATTGGTGTATATGGGAGAGCCACCCCCTTAAGTAGACAGGAACGGATCATTTTTTGTTCGATTGTTCACTCAGGATGTTAACCATCTTCAGCTATCCAACATCTTTGCTGCCTGTGCATTGAGGTCACGCGCATACATTCCTGGGGGAGGGCGGGAGTGGAGGGAACTGCCTGATGAAACGTTATCGACTGGTAGTGAAGAGCAGCGTCGACTATTGTTAAAATCAACCGTGATCTTCCGTCTGTGAGGGCGAGAGTGAGACAAGAGGACGAAAATCCGTGTTCCCTGTTTGTTTAGAGAAAATAATTATATATAAGCAACGTTGGACAACTCTTTCATATTTAAGCTATATAGTTATTTATCTATCTTATCTGTGTGAAGATGAACGGGGTAACGCGGAGTCTGTGTACATTTGAGGACCTCAGAGCTGATGAGAGAACAGCGGATGGGTGCAGGAGACTGAGGCTGACTCTCCACCAGCAGAACCAGGTCGGGAGGATCACAGAACAACCCAGGAGCAAGCCAATCGGACGAGCATTTGCTCTGGTGCAGCCAACCAGTGATAGGCCTGCTCTGAAGCCTGAACCAATCAAACCCTCTGAGGAGAAGACTGAAAAGGTTGAGGTCATCAAGGTGTATCTGGAGGATCGTAGACAGGAGCAGCAGAGACACCAGCAGAGCCTCAAGATGTTGTCAGATGAAGTCTCCCAGATACAGGAGGTGAGATACTGTCTGAAGACCCTGAGGGAACAGATGGCCACCAAGAACAAAGGACAACACAAGTTTCTTGCTAGTGGCTACGGAGTCAGCACTCCCTCCAATCAGAACATCTCTTCTTCCTCAAAGGGAGGAGCTAAAGATGATGGGCAGggaggggaggatgaggtGGAGAGGGACAAGATGAGGGAGGTCAGTAAGCGTCTGTATGCTCAGCTACAGGAGGCCGAGAAGAAACAccaggaggagagagcgagactgCAGGCTGAGGGTGTGGATCTGCGCCAGCGTCTGGGGGAGCAGGAGGAGAAGCtgaagggggtggaggagagtagTGAGAGGAAGGACCAGAGGATTGAGGAGCTCCAGAGGCTGCTGGGAGGCATGGCGCAGGAGAGCCAAGCCCTACGAGACACactgaggaacagagaggaggaactCAGAGAATTACGCAAGATCAGAGAGGAGGGCAGGAACgaggagcagagGTCAGAGCAGTTGGAGAAGGAGCTGGCCATTCTGAAGGAGAAGATCCATCATCTAGATGACATGCTGAAGAGCCAGCAGAGGAAAGTCAGACACATGATCGAACAGctgcAGAACTCTCGTATGGTGATCCAGGAGAGGGACCGTGTCATCAGAGATCTGGAGGAGAAGGTGGCTTTCCTGGAGGCAGAGaaccGGGAGATGCATGATCAGATGGACTACTTCCTGGGAGGTGAAAGGTCAAACTCGCACCTCTCATCAGACCGCCACGCCCAGATTGTCTACAGTAAGCCTTTGAAGCCCAGCAACTCGTCCAACAAGCCTCTTCCCTTCATCAAAATCATTGAGACCAAGTCCTGAACTGGTGAAAGCGAGGGAGAAGGTTAACCTAACGACACCAAACCTGCTAAGCTAAACAACAACGGACTGAAATAGACCACCACCACATTACTACCACACCAACATCACAATGCACGTATGAAGTTTAAACTGAGGTGACCACAACATCACATCAACTGACCACCAGCTATGACCATCACCCACCCATGGCCACACTCCTTCGATAGGAcactatgcagtgtgtgtgtgtcagaggaggctggtggaagaAACTATTTATTTATTCATAGCAGACAGATTATTCTTTCTAACCCAGTGTCATAATCTATTGTCATCTGTTGAAGTCCGTCTGAAGGACTTTACTACtgacagagaggaccagagacAGTGTGATAGCAGTACCCTGTGGTTAGTAAGGGTCTGATAACAGACCGAGTCTTTGGCCTCAGAGAGGAGGCAACCGTGCCAGGCTGGGCCATAACAGAGAAATAAAATGGCCGATGAGTGAGAGGGGGAtcgaagagagagatgggggggtaaGAAATCTGTATTAAACTAATCAGAACACAACCAGTTTGTCATATTTTTACCATGGCACCAAGGCAAGATCGAGTGAGTGTTGCTACACTATATAGGTATTGGAGAAGCAGAAACACATTAAGGATAGAGGATATAGTTTTCCATCAAACCCTTCTGTAACCCATTAACCTACTTCCTGTGTCTGTGGCCTAGAGTCCACTGTTAGAATCCTCTTTATTTGACACCTGAAAGGGAGGAAGACAATCTTTGACTTTTTGTAAATATACTTTTATGGTCACGTAACGACCACAGTGAAGTGTCATGGTTTATACAAAGTTATGAAGGccatgtttgttattttgttcgttGAGAAAGTGGGATGTTTGGTCTAGTATGTGTGGATTAGAAGTCTTCCTCACCAATACTGATGTCACTTTAAAGTCTAAAGGAAATGAAGATGATTCATTCTGACAAGTACTTACTAACCTTGCAAGAAGTCTTGTTGACATGATCCACATTTTTGCATGCATTTCAGTTACCTGACGTTTCATCCACTATCACCAGCTTTGTACACAACTATATGTATTTGTTTATGTGGTATTCTTTGATGTCCCTGTAGTCTCACTCTGGGATTTGTTTGTTAATTTTATCCTTCAGACAGGAATGTTTGGCCTGACACTTAGTGTGTGACAATCATCTTTATGTATTTATGTGAAAATACAACTTTCATTTTAGGGAAACCATTTTCAGTAGACATTTTAGTGTGTGTTAACAACATATATActttgtgttttatttattttaataaatatataaaaac

Function

NR:

description
tuftelin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040374.1 False 2399 mRNA 0.47 13 7365417 7394498
XM_036967433.1 True 2948 mRNA 0.46 12 7365417 7394499

Neighbor

gene id symbol gene type direction distance location
LOC110536068 LOC106595411 coding downstream 22134 7323036 ~ 7343283 (-)
LOC110520786 atp8b2 coding downstream 44439 7221996 ~ 7320978 (-)
LOC118945273 NA coding downstream 139341 7224126 ~ 7226076 (-)
il6r il6ra coding downstream 145337 7158585 ~ 7220080 (-)
LOC110508339 NA coding downstream 371572 6988898 ~ 6993845 (-)
LOC110520792 LOC106575505 coding upstream 13753 7408252 ~ 7436195 (-)
LOC110508441 LOC106575525 coding upstream 111702 7506201 ~ 7510860 (-)
LOC110508454 s10ag coding upstream 122696 7517195 ~ 7524544 (-)
LOC110508472 LOC106573847 coding upstream 134028 7528026 ~ 7530317 (-)
LOC110508481 LOC106573839 coding upstream 137049 7531548 ~ 7552027 (-)
G220819 NA non-coding downstream 25556 7339207 ~ 7339861 (-)
G220729 NA non-coding downstream 45930 7314310 ~ 7319487 (-)
G220796 NA non-coding downstream 65101 7300083 ~ 7300316 (-)
G220794 NA non-coding downstream 67015 7298165 ~ 7298402 (-)
G220792 NA non-coding downstream 73368 7291837 ~ 7292049 (-)
G220797 NA non-coding upstream 11938 7406437 ~ 7408110 (-)
G220879 NA non-coding upstream 83647 7478146 ~ 7479468 (-)
G220889 NA non-coding upstream 100124 7494623 ~ 7494865 (-)
G220892 NA non-coding upstream 104014 7498513 ~ 7502503 (-)
G220894 NA non-coding upstream 109834 7504333 ~ 7504614 (-)
G220751 NA other downstream 163996 7176392 ~ 7201421 (-)
G220261 NA other downstream 265247 7099338 ~ 7100170 (-)
G220242 LOC100194679 other downstream 281726 7082745 ~ 7083691 (-)
G220229 LOC100135938 other downstream 303586 7019976 ~ 7061831 (-)
LOC110508494 LOC106575071 other upstream 161888 7554786 ~ 7573519 (-)
G221788 LOC106574877 other upstream 954820 8345683 ~ 8350289 (-)

Expression


Co-expression Network