LOC110508441 (LOC106575525)


Basic Information

Item Value
gene id LOC110508441
gene name LOC106575525
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7506201 ~ 7510860 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588963.2
ctcaccgCTCTTCGTTACTCTCCCTCTACGTGTCCAACAGCAGGCCAGCACTCCTCCTTTGCTCAGTATGTCTAACCCTACCAAAACAGAGAATGTGTCCACCTTGGAGACTGCCATGCAGCTGATGATCCAGACCTTCCATAAGTATTCTGGAGACGAGGGCGACAAATACAccctgagcagagcagagctcaaAGTGATGCTCTCTGCAGAGCTGGGCAACTACCTGGGGAATGCCCAGGACAAGGAAGCAGTGGACAAGGTGATGGGGGACCTGGATGCCAACAATGATGGAGAGGTGGACTTCACTGAGTTTGTTATCCTGGTGGGGGCGCTCACCGTCGCCTGCAACGACTTCTTCCTGGAGTACAACGACAAGGGGGAGAAGAagtgaacacaacacacacacgtacactcacacatgtctatgctctctctctctctcacactcactcactcactcactcactgaggAGAGGACGATTATTATGAGACATCTCCACTCAAATCCTGGCTAGGCTTAATGTCTACTGTTTAATAACAGAGACctacacacaccatacataccacacacatgcacacacacacactctgagatGTTCATAGATGCATCCTGGCACCCTGGgcagtgtgtttttgtgtttagtgtgtgtgccATCTCGATCCAAACCAAACCCAACACAGAGAAGTTTATTCCAGAGTGAAAATGTGGGGAGTTTAAGTCATCATTATTAACGTCATTCAACGTCATTGTTGAATATGTGAATATAATTTCTCTATCTTTTCATTTGTTTTGTAAACCCCCTGTTCATTTCTCGTTCATTGTTAAACTGTTCCTCCTCGATAGAATAAACTTGACATTTAACCAAA

Function

NR:

description
protein S100-A1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588963.2 True 870 mRNA 0.46 3 7506201 7510860

Neighbor

gene id symbol gene type direction distance location
LOC110520792 LOC106575505 coding downstream 70006 7408252 ~ 7436195 (-)
LOC110537383 LOC105024478 coding downstream 111702 7365417 ~ 7394499 (-)
LOC110536068 LOC106595411 coding downstream 162918 7323036 ~ 7343283 (-)
LOC110520786 atp8b2 coding downstream 185223 7221996 ~ 7320978 (-)
LOC118945273 NA coding downstream 280125 7224126 ~ 7226076 (-)
LOC110508454 s10ag coding upstream 6335 7517195 ~ 7524544 (-)
LOC110508472 LOC106573847 coding upstream 17667 7528026 ~ 7530317 (-)
LOC110508481 LOC106573839 coding upstream 20688 7531548 ~ 7552027 (-)
LOC110508494 LOC106575071 coding upstream 43926 7554786 ~ 7573519 (-)
LOC110508498 NA coding upstream 62993 7573853 ~ 7575614 (-)
G220894 NA non-coding downstream 1587 7504333 ~ 7504614 (-)
G220892 NA non-coding downstream 3698 7498513 ~ 7502503 (-)
G220889 NA non-coding downstream 11336 7494623 ~ 7494865 (-)
G220879 NA non-coding downstream 26733 7478146 ~ 7479468 (-)
G220797 NA non-coding downstream 98091 7406437 ~ 7408110 (-)
G220908 NA non-coding upstream 24356 7535216 ~ 7535425 (-)
G220866 NA non-coding upstream 41322 7552182 ~ 7552852 (-)
G220922 NA non-coding upstream 78667 7589527 ~ 7591887 (-)
G220751 NA other downstream 304780 7176392 ~ 7201421 (-)
G220261 NA other downstream 406031 7099338 ~ 7100170 (-)
G220242 LOC100194679 other downstream 422510 7082745 ~ 7083691 (-)
G220229 LOC100135938 other downstream 444370 7019976 ~ 7061831 (-)
G221788 LOC106574877 other upstream 838459 8345683 ~ 8350289 (-)
G221806 NA other upstream 883501 8394361 ~ 8410809 (-)

Expression


Co-expression Network