LOC110508454 (s10ag)


Basic Information

Item Value
gene id LOC110508454
gene name s10ag
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7517195 ~ 7524544 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588983.2
ACGGTAAGACGTTGGTATAGTGAGTCGAATGACAACCCAAGGTGTATTTAATAGCGCGGGGAGAAATGGCTTGTGGCAAACGGCGTTGACAGCACCATGCAGGTATGGGTGCGGAGGGGAACCAGTCACACCTGtagCTATGGAGTCGGCCATCCAGACAGTGGTAGAAGTGTATCTGAAGTCTGCCAAAGGGAAGGGCAGTCTCGGAGATAAGGACTTCCAGGGCCTCGTCAATAAACAGCTCGGCAACGTCATGACTGGAACAGAGAGTTCCTCTGCAGTGAAGGAGATGCGTAAGGGATTGGACGAGAACAAAGATGGGAAGGTCAGCTTCCAGGAATACATGACTCTGATTGGCTACGTGGCAAACACCCTCAGCGAGCAGAGGACTGCAGCCAACAACACACCTGCCTCATAGGAACTACATATGGCTTCATAGACATTCTATAAGATGTCTTATGCAGTCTATAAGGCAGGGTTCTTCAATCCTGGTTCTAGTGACCcacagggtgtgcaggctttAGTTCCATTCCAGCACTGACACACCAGAGGAAACGCGTGAAGGCTTTGATGGGATTGATTACAGTGTGTGTGACCACAGGGCCAGAATTGAAGAACACTGCCATAAGGCCCCATGTACCTATAGAGGCTCATAGACCTGTCAATCTCCCTTGGCTGTATATCACTACATAATCACTACATAATCAGACTTAACTTCATCTCAACATATTTTATATGCTTACACTACCAATCTTCATCTcagttataaccatgttactGGTCTTAtaaatactttatgaaggcattttttttacattaagtTTAACAGTTCACATGTTTTAGTATAACTACTCTAAATCAACACTTCTACAGTAAATGGTTTGTTATCATGTTGAAATAAATGCCATGGCAATGTTATAAAG
>XM_036967476.1
acAAGCTTGTGGACAATGACATTCATTCGAGTCTGTCTACAACCTCAACACCGACCGTGGCCCTGTGTAACAGCAGCTAGGACAGCTCACACTGAATTATTAACGAACGtagCTATGGAGTCGGCCATCCAGACAGTGGTAGAAGTGTATCTGAAGTCTGCCAAAGGGAAGGGCAGTCTCGGAGATAAGGACTTCCAGGGCCTCGTCAATAAACAGCTCGGCAACGTCATGACTGGAACAGAGAGTTCCTCTGCAGTGAAGGAGATGCGTAAGGGATTGGACGAGAACAAAGATGGGAAGGTCAGCTTCCAGGAATACATGACTCTGATTGGCTACGTGGCAAACACCCTCAGCGAGCAGAGGACTGCAGCCAACAACACACCTGCCTCATAGGAACTACATATGGCTTCATAGACATTCTATAAGATGTCTTATGCAGTCTATAAGGCAGGGTTCTTCAATCCTGGTTCTAGTGACCcacagggtgtgcaggctttAGTTCCATTCCAGCACTGACACACCAGAGGAAACGCGTGAAGGCTTTGATGGGATTGATTACAGTGTGTGTGACCACAGGGCCAGAATTGAAGAACACTGCCATAAGGCCCCATGTACCTATAGAGGCTCATAGACCTGTCAATCTCCCTTGGCTGTATATCACTACATAATCACTACATAATCAGACTTAACTTCATCTCAACATATTTTATATGCTTACACTACCAATCTTCATCTcagttataaccatgttactGGTCTTAtaaatactttatgaaggcattttttttacattaagtTTAACAGTTCACATGTTTTAGTATAACTACTCTAAATCAACACTTCTACAGTAAATGGTTTGTTATCATGTTGAAATAAATGCCATGGCAATGTTATAAAG
>XM_021589000.2
CCCAGGCACACGGCCCCCTTTCCCAGGCACACGCCCTTCTGTGACACAATACAAAAAAGTTTGGTGAAGAACATTTTCTATCACGGAAGAGATTCTTTTGAGTGCAACTAGTTGATCAAGTTTGAGCCTTGAGAAGAGTgcctgagacacagagagagcctGGACAAGATAATTGACATCGAGCACATTTGTTTTTTTCTCATTCACAATCTAACGtagCTATGGAGTCGGCCATCCAGACAGTGGTAGAAGTGTATCTGAAGTCTGCCAAAGGGAAGGGCAGTCTCGGAGATAAGGACTTCCAGGGCCTCGTCAATAAACAGCTCGGCAACGTCATGACTGGAACAGAGAGTTCCTCTGCAGTGAAGGAGATGCGTAAGGGATTGGACGAGAACAAAGATGGGAAGGTCAGCTTCCAGGAATACATGACTCTGATTGGCTACGTGGCAAACACCCTCAGCGAGCAGAGGACTGCAGCCAACAACACACCTGCCTCATAGGAACTACATATGGCTTCATAGACATTCTATAAGATGTCTTATGCAGTCTATAAGGCAGGGTTCTTCAATCCTGGTTCTAGTGACCcacagggtgtgcaggctttAGTTCCATTCCAGCACTGACACACCAGAGGAAACGCGTGAAGGCTTTGATGGGATTGATTACAGTGTGTGTGACCACAGGGCCAGAATTGAAGAACACTGCCATAAGGCCCCATGTACCTATAGAGGCTCATAGACCTGTCAATCTCCCTTGGCTGTATATCACTACATAATCACTACATAATCAGACTTAACTTCATCTCAACATATTTTATATGCTTACACTACCAATCTTCATCTcagttataaccatgttactGGTCTTAtaaatactttatgaaggcattttttttacattaagtTTAACAGTTCACATGTTTTAGTATAACTACTCTAAATCAACACTTCTACAGTAAATGGTTTGTTATCATGTTGAAATAAATGCCATGGCAATGTTATAAAG
>XM_021588991.2
TTTCCCAGGCACACGGCCCCCTTTCCCAGGCACACGCCCTTCTGTGACACAATACAAAAAAGTTTGGTGAAGAACATTTTCTATCACGGAAGAGATTCTTTTGAGTGCAACTAGTTGATCAAGTTTGAGCCTTGAGAAGAGTgcctgagacacagagagagcctGGACAAGATAATTGACATCGAGCACATTTGTTTTTTTCTCATTCACAATCTAACGCTATGGAGTCGGCCATCCAGACAGTGGTAGAAGTGTATCTGAAGTCTGCCAAAGGGAAGGGCAGTCTCGGAGATAAGGACTTCCAGGGCCTCGTCAATAAACAGCTCGGCAACGTCATGACTGGAACAGAGAGTTCCTCTGCAGTGAAGGAGATGCGTAAGGGATTGGACGAGAACAAAGATGGGAAGGTCAGCTTCCAGGAATACATGACTCTGATTGGCTACGTGGCAAACACCCTCAGCGAGCAGAGGACTGCAGCCAACAACACACCTGCCTCATAGGAACTACATATGGCTTCATAGACATTCTATAAGATGTCTTATGCAGTCTATAAGGCAGGGTTCTTCAATCCTGGTTCTAGTGACCcacagggtgtgcaggctttAGTTCCATTCCAGCACTGACACACCAGAGGAAACGCGTGAAGGCTTTGATGGGATTGATTACAGTGTGTGTGACCACAGGGCCAGAATTGAAGAACACTGCCATAAGGCCCCATGTACCTATAGAGGCTCATAGACCTGTCAATCTCCCTTGGCTGTATATCACTACATAATCACTACATAATCAGACTTAACTTCATCTCAACATATTTTATATGCTTACACTACCAATCTTCATCTcagttataaccatgttactGGTCTTAtaaatactttatgaaggcattttttttacattaagtTTAACAGTTCACATGTTTTAGTATAACTACTCTAAATCAACACTTCTACAGTAAATGGTTTGTTATCATGTTGAAATAAATGCCATGGCAATGTTATAAAG
>TU252079
TACAAAAAAGTTTGGTGAAGAACATTTTCTATCACGGAAGAGATTCTTTTGAGTGCAACTAGTTGATCAAGTTTGAGCCTTGAGAAGAGTgcctgagacacagagagagcctGGACAAGATAATTGACATCGAGCACATTTGTTTTTTTCTCATTCACAATCTAACGCTATGGAGTCGGCCATCCAGACAGTGGTAGAAGTGTATCTGAAGTCTGCCAAAGGGAAGGGCAGTCTCGGAGATAAGGACTTCCAGGGCCTCGTCAATAAACAGCTCGGCAACGTCATGACTGGAACAGAGAGTTCCTCTGCAGTGAAGGAGATGCGTAAGGGATTGGACGAGAACAAAGATGGGAAGGTCAGCTTCCAGGAATACATGACTCTGATTGGCTACGTGGCAAACACCCTCAGCGAGCAGAGGACTGCAGCCAACAACACACCTGCCTCATAGGAACTACATATGGCTTCATAGACATTCTATAAGATGTCTTATGCAGTCTATAAGGCAGGGTTCTTCAATCCTGGTTCTAGTGACCcacagggtgtgcaggctttAGTTCCATTCCAGCACTGACACACCAGAGGAAACGCGTGAAGGCTTTGATGGGATTGATTACAGTGTGTGTGACCACAGGGCCAGAATTGAAGAACACTGCCATAAGGCCCCATGTACCTATAGAGGCTCATAGACCTGTCAATCTCCCTTGGCTGTATATCACTACATAATCACTACATAATCAGACTTAACTTCATCTCAACATATTTTATATGCTTACACTACCAATCTTCATCTcagttataaccatgttactGGTCTTAtaaatactttatgaaggcattttttttacattaagtTTAACAGTTCACATGTTTTAGTATAACTACTCTAAATCAACACTTCTACAGTAAATGGTTTGTTATCATGTTGAAATAAATGCCATGGCAATGTTA
>TU252080
TACAAAAAAGTTTGGTGAAGAACATTTTCTATCACGGAAGAGATTCTTTTGAGTGCAACTAGTTGATCAAGTTTGAGCCTTGAGAAGAGTgcctgagacacagagagagcctGGACAAGATAATTGACATCGAGCACATTTGTTTTTTTCTCATTCACAATCTAACGtagCTATGGAGTCGGCCATCCAGACAGTGGTAGAAGTGTATCTGAAGTCTGCCAAAGGGAAGGGCAGTCTCGGAGATAAGGACTTCCAGGGCCTCGTCAATAAACAGCTCGGCAACGTCATGACTGGAACAGAGAGTTCCTCTGCAGTGAAGGAGATGCGTAAGGGATTGGACGAGAACAAAGATGGGAAGGTCAGCTTCCAGGAATACATGACTCTGATTGGCTACGTGGCAAACACCCTCAGCGAGCAGAGGACTGCAGCCAACAACACACCTGCCTCATAGGAACTACATATGGCTTCATAGACATTCTATAAGATGTCTTATGCAGTCTATAAGGCAGGGTTCTTCAATCCTGGTTCTAGTGACCcacagggtgtgcaggctttAGTTCCATTCCAGCACTGACACACCAGAGGAAACGCGTGAAGGCTTTGATGGGATTGATTACAGTGTGTGTGACCACAGGGCCAGAATTGAAGAACACTGCCATAAGGCCCCATGTACCTATAGAGGCTCATAGACCTGTCAATCTCCCTTGGCTGTATATCACTACATAATCACTACATAATCAGACTTAACTTCATCTCAACATATTTTATATGCTTACACTACCAATCTTCATCTcagttataaccatgttactGGTCTTAtaaatactttatgaaggcattttttttacattaagtTTAACAGTTCACATGTTTTAGTATAACTACTCTAAATCAACACTTCTACAGTAAATGGTTTGTTATCATGTTGAAATAAATGCCATGGCAATGTTA

Function

NR:

description
protein S100-A1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588983.2 False 923 mRNA 0.44 3 7517195 7523801
XM_036967476.1 False 898 mRNA 0.44 3 7517195 7523907
XM_021589000.2 False 1005 mRNA 0.43 3 7517195 7524541
XM_021588991.2 False 1005 mRNA 0.43 3 7517195 7524544
TU252079 False 948 TUCP 0.42 3 7517200 7524492
TU252080 True 951 TUCP 0.42 3 7517200 7524492

Neighbor

gene id symbol gene type direction distance location
LOC110508441 LOC106575525 coding downstream 6335 7506201 ~ 7510860 (-)
LOC110520792 LOC106575505 coding downstream 81000 7408252 ~ 7436195 (-)
LOC110537383 LOC105024478 coding downstream 122696 7365417 ~ 7394499 (-)
LOC110536068 LOC106595411 coding downstream 173912 7323036 ~ 7343283 (-)
LOC110520786 atp8b2 coding downstream 196217 7221996 ~ 7320978 (-)
LOC110508472 LOC106573847 coding upstream 3983 7528026 ~ 7530317 (-)
LOC110508481 LOC106573839 coding upstream 7004 7531548 ~ 7552027 (-)
LOC110508494 LOC106575071 coding upstream 30242 7554786 ~ 7573519 (-)
LOC110508498 NA coding upstream 49309 7573853 ~ 7575614 (-)
LOC110520788 LOC106593005 coding upstream 52464 7577008 ~ 7617193 (-)
G220894 NA non-coding downstream 12581 7504333 ~ 7504614 (-)
G220892 NA non-coding downstream 14692 7498513 ~ 7502503 (-)
G220889 NA non-coding downstream 22330 7494623 ~ 7494865 (-)
G220879 NA non-coding downstream 37727 7478146 ~ 7479468 (-)
G220797 NA non-coding downstream 109085 7406437 ~ 7408110 (-)
G220908 NA non-coding upstream 10672 7535216 ~ 7535425 (-)
G220866 NA non-coding upstream 27638 7552182 ~ 7552852 (-)
G220922 NA non-coding upstream 64983 7589527 ~ 7591887 (-)
G220751 NA other downstream 315774 7176392 ~ 7201421 (-)
G220261 NA other downstream 417025 7099338 ~ 7100170 (-)
G220242 LOC100194679 other downstream 433504 7082745 ~ 7083691 (-)
G220229 LOC100135938 other downstream 455364 7019976 ~ 7061831 (-)
G221788 LOC106574877 other upstream 824775 8345683 ~ 8350289 (-)
G221806 NA other upstream 869817 8394361 ~ 8410809 (-)
G221807 adar other upstream 978640 8503184 ~ 8523208 (-)

Expression


Co-expression Network