LOC110508507 (LOC106575080)


Basic Information

Item Value
gene id LOC110508507
gene name LOC106575080
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7618368 ~ 7627967 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589071.2
CTTACAGCTCATTGGCTTTTTGGATTCAGAGATGGCACTTTATTGCTCCTGATTGGCTCGCCAGAGCCACCCAGTGTTTGAAGGGCATGCAGTTTGTCGGCTAATACATAACGAGGACGTATGCGACTTTAGGtTGGTTCTCTTCCCCCACTCTTTCTGTCTCAGGTCTGGATGCTGCAGGCTGTGTCCAGGCTGAGTAGAGCAGCGGTGCATGTGAGGAGAGTGGCCGCCCAGGTCCAGGTCACCACTGTAACCATGGCCCAGAATCACCAGAGCTGCGGTACCTCCTGTCAACAGAATGGGGGTGCTGTCACAGCAGCCATCCTCATCATCGGGGACGAGATACTCAAGgGTCACACGGTGGACACTAACAGCGCCTTCCTGTTGCGAGCTCTGAGGAAGCTGGGAGTGTGTGTCCAGCGTGTCACAGTAATCCCAGACCAGCAGGAGGTCATCTCTAAGGAGGTGGCCCTCCTGGCCCCACAGTACACACACCTGCTCACCTCTGGGGGAATAGGCCCCACCCACGACGACGTCACCTTCGAGGGTGTTGCCATGGCGTTCGAGGAGGAACTGCATGCCCACCCGGAGCTGACCCGTTTGGTGGAGGAGTTCTTTGGGGTGGTGGATAGGGAGAATGCAGCCATGAAGCTAGCCATGGTCCCCCGCTCGGCCAAGCTCAACTACGGCACTGACCCTCAGACTGGACAGCCACTACGCTACCCACTGGTGAGTGTGCGTAACGTCTACATCTTCCCTGGGATCCCGTCTCTGTTGGAGAGAGCCTTCAACGGTCTGGAGCACCTGTTCGCTGGCTCAGGGACCACCTTCCACACACGAGAGGTGTTTGTGGATGCAGACGAGGCGTTGATCGCCCCGGTGCTGACCCGCCTGCAGGCGGGCTGGGGGAAGAGGGTGGCTCTGGGCTCCTACCCTGACTGGCTCAGTAACTACCACCGGGTCAGGCTGGTGCTGGATTCAGACAGCtctgaggaggtggagaaggcCCGGGCTCAGCTGCTCGAGGAGATGCCCAAAGGCAGTGTGGTTCCCCTGGTCACGGACCCTGTGTCCATCGCTACTGAGGAGGTCTACACACTGGCCaacagcgGCACGCCGCTGGGTGATAAAGTGGCAAACGCTCTGAAGACCATAGAGTCTGCTCTGGATCAGTATTCGGCAGGGGAGATCTGTGTGGGCTTCAATGGAGGCAAAGACTGCACTGCTCTACTACATCTATATTACGCTGCACTGaaacgGCGGTATCCGGAGGGTAAGGACAAGGTAAAGGCTCTGTACATTCGCATCGTCTCTCCCTTcccagagatggagagattcCTCCAGGACACAATAAAGAGGTATGACCTGGAGATTTTCTCAGTGGAGGGCAGTATTCGGCAGGCATTGagtgaggtacaggagaggaggcCGGAGCTGAGAGCTGTGTGTATGGGCACCAGGAGGAGTGACccctactcacacacactcacacccatgTGTCTCACTGACCCTGGATGGCCGGACTACATGAGGGTCAACCCCCTGCTGgACTGGACGTATCATGATATCTGGTCATTCCTGAGGACTCTATATGTGCCCTACTGTATTCTGTATGATAAAGGGTACACCTCATTGGGCAGCATGGACAACACATGCCGAAACCCCGCCCTCCAAGTGGTGGATGGGAGGGGCGTGAGCCGCTATAGACCTGCCCACCACTTGGAGAATGAGGAAATGGAGCGCGACTCACGTGAATGATGTCACTTCCTTGTTTGTAACGTCATGTCCTGATCTTTTATCCGCCCTTCCTGTTTGGGGCTCCAGGTAAGAGATGCTTGTAGggacagacctaggatcagcatATCCTCCTCAAAtcccaaccttaaccattagaggaAGGAAgtggagagtgaaagaaagagggaaCAGATTGAGGAAAGTGGAACAGACAAAGAACCAGAGACTGATCGCAGAATGAGTGAATTTTGAAGGAAAAGTGTGTATTTCTGAATGGAAAACATGTGCCTGAGTGTATGTCTGAGTGGCTTAGAATCTAAAGATATGGATTTACATGGTTTGTAATAAAATATCAATCTGTCA

Function

NR:

description
FAD synthase-like isoform X1

GO: NA

KEGG:

id description
K00953 FLAD1; FAD synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589071.2 True 2100 mRNA 0.54 10 7618368 7627967

Neighbor

gene id symbol gene type direction distance location
LOC110508431 LOC106575520 coding upstream 117831 7460440 ~ 7500537 (+)
LOC118945274 LOC106575512 coding upstream 170486 7437011 ~ 7447882 (+)
LOC110536044 LOC106575458 coding upstream 260960 7348131 ~ 7357408 (+)
LOC110508415 LOC106605928 coding upstream 447925 7161950 ~ 7170443 (+)
LOC110508400 NA coding upstream 504587 7109982 ~ 7113781 (+)
LOC110513974 efna3 coding downstream 313335 7941302 ~ 8086452 (+)
efna1b LOC106574320 coding downstream 520440 8148407 ~ 8159396 (+)
LOC110520790 LOC106606111 coding downstream 542667 8170634 ~ 8178058 (+)
LOC110520877 LOC106574226 coding downstream 617261 8245228 ~ 8249653 (+)
krtcap2 kcp2 coding downstream 621786 8249753 ~ 8254163 (+)
G220576 NA non-coding upstream 1311 7616917 ~ 7617057 (+)
G220575 NA non-coding upstream 3576 7613663 ~ 7614792 (+)
G220552 NA non-coding upstream 12849 7600401 ~ 7605519 (+)
G220549 NA non-coding upstream 38034 7577070 ~ 7580334 (+)
G220565 NA non-coding upstream 44137 7573889 ~ 7574231 (+)
G220578 NA non-coding downstream 1297 7629264 ~ 7630255 (+)
G220582 NA non-coding downstream 5951 7633918 ~ 7634120 (+)
G220581 NA non-coding downstream 7520 7635487 ~ 7636196 (+)
G220587 NA non-coding downstream 13674 7641641 ~ 7642008 (+)
G220588 NA non-coding downstream 14161 7642128 ~ 7642584 (+)
G220445 LOC106575489 other upstream 236805 7378258 ~ 7381563 (+)
G220435 NA other upstream 253083 7359668 ~ 7365285 (+)
LOC110508323 LOC106575347 other upstream 631846 6979131 ~ 6988449 (+)
G221299 s10i other downstream 771104 8399071 ~ 8489067 (+)
G221514 NA other downstream 1101010 8728977 ~ 8732478 (+)
LOC110520796 fam189b other downstream 1133367 8715996 ~ 8766590 (+)
LOC110520836 LOC106605888 other downstream 1146080 8772336 ~ 8800464 (+)

Expression


Co-expression Network