si:dkey-246i14.3 (LOC106570832)


Basic Information

Item Value
gene id si:dkey-246i14.3
gene name LOC106570832
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7744358 ~ 7840475 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967618.1
CCCTCCTAACCCAAATCACAGCGCTCCAGACAGGACCCACTGACACCTATCAACTGATTTCAACTCTAATTCGGAAAACGCTGATATTTTAACCTAGCATACTCATAGTTCAGCAGGTGATTATCAACAACTTGCAAGTTAACTTTAGGCATATACTCGGTAAGTTAGTGTACTTTTAAAAGTGTATTTTTGACATAAGGAAATAAGTTGTGCCGCAGCAGAATAAAGGAGGCTATCCTTTTCAGTATCAGGCAGCAACTTTACCAAACTATCTGACTTTGTGTTCAGCTTTTGAGGAGTCTCTCCATCGTTTGACTTTATTCACCATGCAACAACGGCTTCCACATAGGATGTACCCCGAAAGGAAGGTATTTTGGTGACTTAGTTTGAGAACGTTTGAACGGGAATATTGCGTCAATAAAGGTGATTCTACTCTGCGTTAACCGGGGCCACTAGTTCTACCTGTCACGGAATTCTTTCAACCAACCACTCCCACCCGGTCCCCTCGTGCTGTCTTTCCGTGGGTCGCCTGCCTCGCCCGCTAACCGTGATGGCGTGCGGTTGGAGTCCGGGAGCTGTCACGGTTTGGAGAACTACCGTTTTCCTGCTCAACATCGCGTGCACAGCGTCGGCCAAGAGACACGTCGTCTACTGGAACTCCACCAACACTAGTTTGACGGGAGGGGATCTGTCCATCCAGGTGAATCTGAATGACTACCTGGATATTTACTGCCCCCACTACCCTCACCCGTCTCCCCCCAGTGAGGTCTACCCCCAGGTCCCACCAGACAGCCTGGCCCTGTACCTGGTGGCTGAGGGGGGGTTCAGGGGCTGTGTGGAGACCCAAGGGGCCATCAAGAGATGGGAGTGTAACAGCCCCCATGCCCCCTTAGGCCCTGTCCGCTTCTCAGAGAAGATCCAGCGCTTCACCCCCTTCTCTCTGGGCTTCGAGTTCCTCCCCggacaccactactactacagctcattGCCTACAGGGGAAAGCTCACCGCTGCCCTGCATGAAGCTGCGAGTCACAGTGTGCTGTGAGCCCACAACCGTAGGGTCCAAGCAGAATAAGCAGGAACAAGGCAATCAAAAAGAATTGTGGGGAACACACTGAGGGTACCGCCTCACTTCACCTCACACGCTCCGAACCACATCGGCTGATTGACAGATGCTCCTCACCAACCAGGTGTGTAGGTACAGTATTTAGACTGTCTGCTGAGCACTTAACCAGGTGAGGACCTCTACCAATGAGAAGAGGCCAAAGCTGGTGTTTGTTTGAATAGAGGTTTTTGTTTTAGTGCAGTAAAGATTCTGCTTTAGGTGTTTCAGTTAAATGTTGATGTTTTGTAGAGGTCCTGTAATGTTGGCATCCATTTTGATTATTTGAAACATcctgatttttatttttacatggcTGAACTTTTTTTATACAAATGTTTACAGGTCTAGATTTAGATTGCTGTTGTTTATAGTGCTATCAAGAATAACTAAAGCACTTTAGTACAGGTTACCCTGTATTTTTCTTTCAGTTATAAAACATACATTTTCATCATCTTTTCCTTAAACAAATAGCATTAAATGCCATTTTATTATCAAAgcaatttaaatgaattcattTTATTTTGATTGTTTCATATATTTTATCTGTTTGTTAGATATGACATTTTTGAATTTATTACTTCAATGCAATTTCATGTTCCAATCACAAAAGTAATATATCACTAAAGTTAATTTACAGTAGAAGTGTTACAAAAATATCACCAACCTAGCAAACATGCATGTTTTCTTTTCAAAAGTGAAACTGAAATTATTAACTGaaattatttttattaatttaatcCCACAAAAAATAGTGTATATTTAATTAAATTCATAATTCTGATTCGTTTCTTACCTTAATCCAACATCATTCTTAAATACAGGCTTTTCTGGGCTGCAGTTTTTCCCACATTCTAATGTTGTCTTTGGTCACAGCATTTAGAAAAACAATGTTTTCTTTCAGAATAAATATGTTGACTATTAGTTATTCCTGTAAGCACTTACTCAGAGAGATGAGTCTGTAGTATTACTTTACACACACATTTGGATAACAATATGCTTCAATGACAGTTAAATATTTTGTTCTAGTCTACGCAGGTTATTCAGGAATGTAATGATTATTCCAGGGGTTTAAACACTGATGTCTGGAACCTTGTTGTATAAAGTTGGAGCTCCCAGATGTAGTTTTTTTGTTTTCACATTTTAGTGAAGTATGAAACATCTTCTATGAAGAGCGAACTGCAAACAGCCCTTTTATACAAGGTGAGATGACAAAATAAAGATGATTGCAATAAGA
>XM_036967597.1
CCTCCTAACCCAAATCACAGCGCTCCAGACAGGACCCACTGACACCTATCAACTGATTTCAACTCTAATTCGGAAAACGCTGATATTTTAACCTAGCATACTCATAGTTCAGCAGGTGATTATCAACAACTTGCAAGTTAACTTTAGGCATATACTCGGTAAGTTAGTGTACTTTTAAAAGTGTATTTTTGACATAAGGAAATAAGTTGTGCCGCAGCAGAATAAAGGAGGCTATCCTTTTCAGTATCAGGCAGCAACTTTACCAAACTATCTGACTTTGTGTTCAGCTTTTGAGGAGTCTCTCCATCGTTTGACTTTATTCACCATGCAACAACGGCTTCCACATAGGATGTACCCCGAAAGGAAGGTATTTTGGTGACTTAGTTTGAGAACGTTTGAACGGGAATATTGCGTCAATAAAGGTGATTCTACTCTGCGTTAACCGGGGCCACTAGTTCTACCTGTCACGGAATTCTTTCAACCAACCACTCCCACCCGGTCCCCTCGTGCTGTCTTTCCGTGGGTCGCCTGCCTCGCCCGCTAACCGTGATGGCGTGCGGTTGGAGTCCGGGAGCTGTCACGGTTTGGAGAACTACCGTTTTCCTGCTCAACATCGCGTGCACAGCGTCGGCCAAGAGACACGTCGTCTACTGGAACTCCACCAACACTAGTTTGACGGGAGGGGATCTGTCCATCCAGGTGAATCTGAATGACTACCTGGATATTTACTGCCCCCACTACCCTCACCCGTCTCCCCCCAGTGAGGTCTACCCCCAGGTCCCACCAGACAGCCTGGCCCTGTACCTGGTGGCTGAGGGGGGGTTCAGGGGCTGTGTGGAGACCCAAGGGGCCATCAAGAGATGGGAGTGTAACAGCCCCCATGCCCCCTTAGGCCCTGTCCGCTTCTCAGAGAAGATCCAGCGCTTCACCCCCTTCTCTCTGGGCTTCGAGTTCCTCCCCggacaccactactactacagctcattGCCTACAGGGGAAAGCTCACCGCTGCCCTGCATGAAGCTGCGAGTCACAGTGTGCTGTGAGCCCACAACCGTAGGGTCCAAGCAGAATAAGCAGGAACAAGgTACTCCAGCTcttcacagtgatgtgtgttcAATGAGGAcagttcctctttctctcctcctcctcctcatcccactCTTGAACTTCCTCTCTATCTAACATCCCTCTATTCAAGCTGACCTCCTGAGTATCTACCATGCCCACTGTAGATGGCCTGCCTCACCCACTCAGTCCCTACTTTAAACTATCCACACCTCATAGGGAGGCCAAGTCTTCATTTCAGACCCTCAAATGACTGCAATAGGGTAGACTtcaacactacacacactccaACTACACACACTCCAACTAtgcacactccaacacatcaCCTCTGTCTTTTCTGGGGTGGCACTAATCTTTCTCTTCTTggcctcttttctctctgtccactctctcctctcgttCCACCTCTTCCATCCCTCGCTCCTGACTAAGCTCCCTCTGAAACAGACTGACACTAATCTACCATCAAAGCTCTCATTCTTCATTTCCCACCTTTATCCACTCCATCCTGTAGACCCCATCtgtgtcgtctctctctctctctctctctctctctctctctctgtctctctgtctctctgtctctctgtctctctgtctctct
>XM_036967607.1
CCCCTCCTAACCCAAATCACAGCGCTCCAGACAGGACCCACTGACACCTATCAACTGATTTCAACTCTAATTCGGAAAACGCTGATATTTTAACCTAGCATACTCATAGTTCAGCAGGTGATTATCAACAACTTGCAAGTTAACTTTAGGCATATACTCGGTAAGTTAGTGTACTTTTAAAAGTGTATTTTTGACATAAGGAAATAAGTTGTGCCGCAGCAGAATAAAGGAGGCTATCCTTTTCAGTATCAGGCAGCAACTTTACCAAACTATCTGACTTTGTGTTCAGCTTTTGAGGAGTCTCTCCATCGTTTGACTTTATTCACCATGCAACAACGGCTTCCACATAGGATGTACCCCGAAAGGAAGGTATTTTGGTGACTTAGTTTGAGAACGTTTGAACGGGAATATTGCGTCAATAAAGGTGATTCTACTCTGCGTTAACCGGGGCCACTAGTTCTACCTGTCACGGAATTCTTTCAACCAACCACTCCCACCCGGTCCCCTCGTGCTGTCTTTCCGTGGGTCGCCTGCCTCGCCCGCTAACCGTGATGGCGTGCGGTTGGAGTCCGGGAGCTGTCACGGTTTGGAGAACTACCGTTTTCCTGCTCAACATCGCGTGCACAGCGTCGGCCAAGAGACACGTCGTCTACTGGAACTCCACCAACACTAGTTTGACGGGAGGGGATCTGTCCATCCAGGTGAATCTGAATGACTACCTGGATATTTACTGCCCCCACTACCCTCACCCGTCTCCCCCCAGTGAGGTCTACCCCCAGGTCCCACCAGACAGCCTGGCCCTGTACCTGGTGGCTGAGGGGGGGTTCAGGGGCTGTGTGGAGACCCAAGGGGCCATCAAGAGATGGGAGTGTAACAGCCCCCATGCCCCCTTAGGCCCTGTCCGCTTCTCAGAGAAGATCCAGCGCTTCACCCCCTTCTCTCTGGGCTTCGAGTTCCTCCCCggacaccactactactacagctcattGCCTACAGGGGAAAGCTCACCGCTGCCCTGCATGAAGCTGCGAGTCACAGTGTGCTGTGAGCCCACAACCGTAGGGTCCAAGCAGAATAAGCAGGAACAAGCTcttcacagtgatgtgtgttcAATGAGGAcagttcctctttctctcctcctcctcctcatcccactCTTGAACTTCCTCTCTATCTAACATCCCTCTATTCAAGCTGACCTCCTGAGTATCTACCATGCCCACTGTAGATGGCCTGCCTCACCCACTCAGTCCCTACTTTAAACTATCCACACCTCATAGGGAGGCCAAGTCTTCATTTCAGACCCTCAAATGACTGCAATAGGGTAGACTtcaacactacacacactccaACTACACACACTCCAACTAtgcacactccaacacatcaCCTCTGTCTTTTCTGGGGTGGCACTAATCTTTCTCTTCTTggcctcttttctctctgtccactctctcctctcgttCCACCTCTTCCATCCCTCGCTCCTGACTAAGCTCCCTCTGAAACAGACTGACACTAATCTACCATCAAAGCTCTCATTCTTCATTTCCCACCTTTATCCACTCCATCCTGTAGACCCCATCtgtgtcgtctctctctctctctctctctctctctctctctctgtctctctgtctctctgtctctctgtctctctgtctctct
>TU252150
ctccctttccttctgtctctccctttccttctgtctctccctttccttgtctctccctttccttgtctctccctttccttctgtctctctctctctccctttccttctgtctCAGTTTGACGGGAGGGGATCTGTCCATCCAGGTGAATCTGAATGACTACCTGGATATTTACTGCCCCCACTACCCTCACCCGTCTCCCCCCAGTGAGGTCTACCCCCAGGTCCCACCAGACAGCCTGGCCCTGTACCTGGTGGCTGAGGGGGGGTTCAGGGGCTGTGTGGAGACCCAAGGGGCCATCAAGAGATGGGAGTGTAACAGCCCCCATGCCCCCTTAGGCCCTGTCCGCTTCTCAGAGAAGATCCAGCGCTTCACCCCCTTCTCTCTGGGCTTCGAGTTCCTCCCCggacaccactactactacagctcattGCCTACAGGGGAAAGCTCACCGCTGCCCTGCATGAAGCTGCGAGTCACAGTGTGCTGTGAGCCCACAACCGTAGGGTCCAAGCAGAATAAGCAGGAACAAGGTGAGATACAACtgcactcgtgtgtgtgtgtgtgtgtgtgcgttcatgtgGTATGCTACGCATGCACAGGATGTTCTTTGGTATTGATGAACTGCTaattctctggctctctctcaggTACTCCAGCTcttcacagtgatgtgtgttcAATGAGGAcagttcctctttctctcctcctcctcctcatcccactCTTGAACTTCCTCTCTATCTAACATCCCTCTATTCAAGCTGACCTCCTGAGTATCTACCATGCCCACTGTAGATGGCCTGCCTCACCCACTCAGTCCCTACTTTAAACTATCCACACCTCATAGGGAGGCCAAGTCTTCATTTCAGACCCTCAAATGACTGCAATAGGGTAGACTtcaacactacacacactccaACTACACACACTCCAACTAtgcacactccaacacatcaCCTCTGTCTTTTCTGGGGTGGCACTAATCTTTCTCTTCTTggcctcttttctctctgtccactctctcctctcgttCCACCTCTTCCATCCCTCGCTCCTGACTAAGCTCCCTCTGAAACAGACTGACACTAATCTACCATCAAAGCTCTCATTCTTCATTTCCCACCTTTATCCACTCCATCCTGTAGACCCCATCtgtgtcg

Function

NR:

description
ephrin-A4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967618.1 False 2341 mRNA 0.41 5 7744358 7840474
XM_036967597.1 False 1675 mRNA 0.50 5 7746237 7840473
XM_036967607.1 False 1668 mRNA 0.50 5 7746237 7840475
TU252150 True 1161 lncRNA 0.52 3 7746312 7770881

Neighbor

gene id symbol gene type direction distance location
LOC110520788 LOC106593005 coding downstream 127165 7577008 ~ 7617193 (-)
LOC110508498 NA coding downstream 168744 7573853 ~ 7575614 (-)
LOC110508494 LOC106575071 coding downstream 170839 7554786 ~ 7573519 (-)
LOC110508481 LOC106573839 coding downstream 192331 7531548 ~ 7552027 (-)
LOC110508472 LOC106573847 coding downstream 214175 7528026 ~ 7530317 (-)
LOC110520794 LOC105024462 coding upstream 374117 8214332 ~ 8243743 (-)
LOC110520844 LOC106605887 coding upstream 626461 8466936 ~ 8495390 (-)
LOC110520892 LOC106605923 coding upstream 858560 8699031 ~ 8703263 (-)
LOC118964373 NA coding upstream 860988 8701463 ~ 8701598 (-)
LOC118964372 NA coding upstream 861408 8701883 ~ 8702017 (-)
G220956 NA non-coding downstream 3082 7674705 ~ 7741276 (-)
G220948 NA non-coding downstream 88040 7656057 ~ 7656318 (-)
G220942 NA non-coding downstream 95286 7648746 ~ 7649072 (-)
G220941 NA non-coding downstream 97037 7646982 ~ 7647321 (-)
G220940 NA non-coding downstream 98044 7646029 ~ 7646314 (-)
G221073 NA non-coding upstream 8396 7848871 ~ 7849072 (-)
G221076 NA non-coding upstream 9778 7850253 ~ 7850460 (-)
G221086 NA non-coding upstream 21956 7862431 ~ 7862680 (-)
G221089 NA non-coding upstream 29761 7870236 ~ 7870515 (-)
G221091 NA non-coding upstream 31476 7871951 ~ 7872157 (-)
LOC110508454 s10ag other downstream 219866 7517195 ~ 7524544 (-)
LOC110520792 LOC106575505 other downstream 308187 7408252 ~ 7436195 (-)
G220751 NA other downstream 542937 7176392 ~ 7201421 (-)
G221788 LOC106574877 other upstream 508844 8345683 ~ 8350289 (-)
G221806 NA other upstream 553886 8394361 ~ 8410809 (-)
G221807 adar other upstream 662709 8503184 ~ 8523208 (-)
G221986 NA other upstream 922644 8763119 ~ 8763884 (-)
LOC110520835 ash1l other upstream 964222 8804651 ~ 8839679 (-)
G221022 NA non-coding upstream 2045 7772926 ~ 7774540 (-)
G221023 NA non-coding upstream 3707 7774588 ~ 7775316 (-)
G221027 NA non-coding upstream 10660 7781541 ~ 7824663 (-)
G221045 NA non-coding upstream 35880 7806761 ~ 7807945 (-)
G221046 NA non-coding upstream 36037 7806918 ~ 7807362 (-)

Expression


Co-expression Network