LOC110513974 (efna3)


Basic Information

Item Value
gene id LOC110513974
gene name efna3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7941302 ~ 8086452 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967633.1
gagaggagagagaagaggagaggaggagagggaaagagcgagaaCGAGAGACGAATGAGTATTTATGACGCGAGGATCGCAGGATGGATGGACAGACACTTAGAAAATGAAGAAACTCGTTGTTTGAAACTATTTGCTAGAGGGAGAATAAAAAAATGTTAATCTTACGGATTCTTCAAATGCGCATCAAGTAGGGATCTACGCCAAATGAAGAATTAACGTATTTTTCTATGTAAACTCAACATTTCCGAGTGAGAACGGTTCGTAGGCGATGCACGTTGTTAATGTGAATGGACTCGGTGTCTCTCTCCTTTTGTTAGCGCTGTTTTCATCAAATTAGCGCAGCCCATACTCCGCTGCACCCCCCTTGTCGGACGGCCAGCGGACAGCTAAGGACCCGCGTTCTATCTAGAAGAGAGACCGCTCTCCTGTGGTCGAAAGCCGGACCTCTCACCTCTCATTCCCCGCTATAAGAGAGGATCTTCTCGGTATGAAAGCTCCATAAACAGCTATTTTGTAGGGAACCCGTCTGGCAGGGAAGCAACAACAAATCCCCGTTTTCAGACTGTGATTTTTGGGGGACGCGGGCTCGCGTTATGGGGAGGGAGACCTCGCGTATCACAATGGAATTGGAGTTTGAGAACACGTCCCCAGTGCGTTAAGGAACGCAGCCTTATTCCGTTACACTACTGTATTTTACCTTCTCAACTGAAgtctttttttcttattttttttaaaactaccAAATCCGGGATGCCGCATTTCGTGGGGTGAAGGTTCCGAACGCGaggaaaagaaggagagagagagaagagagggaaggacggaggagaaagagagattcggagagcatggctcttgcaacgttgtctctctgtgtgctaACTCTCACCTGGGCAAACTTGTACCAGGTGTGTGCCAACAGGCACGCGGTGCATTGGAACAGCTCCAATATACATCTGCGTAGGGAGGGCTACACGGTGCAGGTGAATGTGAACGACTACCTGGACAtctactgtccccactacaatgACAGCCAGCGCGTGGTGGGCACCGGGGAGCAGTACATCCTCTACATGGTCAGCTACCGTGGTTACAGGACCTGTGACCCCCAGCTGGGCTTCAAGAGGTGGGAGTGTAACCGCCCCCACGCACCAATCAAATTCTCAGAGAAGTTCCAGCGCTACAGCGCCTTCTCCCTGGGCTACGAGTTCCACGTGGGTCAGGAGTATTACTACATCTCTACACCCACTCATCACCACGGTCGCAGCTGCCTCAGATTGAGAGTTTATGTCTGCTGCTCCACAGtgtctgatGTTAATGTAGAACCAGGACATCCAGAAACAGACTACACACTCAGACCAGACATCAAAATCCAGGACATCGaTGATTTTAACCCTGAGATTCCTAAATTGGAGAAGAGTGTCAGTGGAAGCAGTCCATCCAGGGATCGCCTACTCATCACCATAGCGACGCTCCTTCTCGCTGCCATCACCATATCCTAGCAACGGCCATCCCATCAGTGTCGCCATGCCAACCAGCCATGGGAGGGCTTGGGCAGGAGGGGTGAAGGATGACAAGGACTGAGGATTTGGGGGAAAGGGGACAGGAGATTAAGGGAACATGGAAAATAGGGAGTTAGAAGACTTCTGAATGACATTGGttgacaaggtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgctgctgctgctgcttagAAGACGACATTCACACAGAGTATGAAGAGAAGACCTTTTATGACTTTGGACATTGGGCCTGCATGTGTAGGTAtgtttcagagtgtgtgtgtctcaacaTGTGGTGAAGGTAGCCTGTTGAAACATGCACACTGCATACAGCATTTattagagaggagaagagcacCTGACTTTTTATTGGAGCAGCTGATCGCAATGAAACACAGTGACACTTTTTCATGCAATCTGATTGGCTGACACAGTTCTCTTCTTAGGGCTAGTTTCCTGTTTCTTGCTCCGGAGACTGAACTGATTGAACTTGACTGAAACTATCTGAATTATTGCCTTTTTGTTCTGCCAACTGGATTCAACCAGATCTAGTCTGGATCCCTTCTGTGGAACTGGATCTAGTGGTCCTCCTCCCATGTGATCTGGTCTGATCTGGACCGTAGCAGCCTAGTATGAAAGAGCCAGTCTGGGTCCAGGTTTCTGAACTGGGAAGTGGGACCATTCAGTCtaatatgagagagggagagagagctacagtaatGTATCAGAGTAGTAATATGTGTCAATACAATGACAGCTATAGGTTCTAGGTCAGTGGTTGTATACATTGTTATACACATTGACACAACCTCTGGCTCATCATTAAACCCCCTAGAGACATGTTTgtccttcattcattcattcctgGATAGCATTATCTCTGATCTCAGAGGTCAGAAAAGCACAGCAATACTGTCACCGAATGCATTGTATTTGGTTGTACACTGAggacctctcttcctctctcctggagTCGGATGGAATGGGACTACATACCACAGACTCCACATGCCAAACTCTTCTGTTTTATTTTACTGTACACACTAGAACtagaatcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtactgacaatGCACACggcaacatactgtacatgtcttAAGTTTAAGTAACTGAACAAACCAAGTGTATCTGAACATATAGACAACACTAAATAAACCTTGGGTTTAGGTTCTACATGCAAACCAAGTGTATCCGGGAGGACAGGAGAACAATGGGTTAAACTTTATCCTACAGTCCTCTGATTGACATGGTATTTTCCTTCCTAGTTTCTTTGGGATCATAGAAACAATCATTTTGGTAGTTACTCATTGTATAAGTACCAGAAAGTACATATTGTTGCCATTACATCTTAGTAAATACTAGGTTAATACTGTCTGAAAGAGGACTGTAAAATGAAGTGTACTGAACAACGTGAACAAACTGTACTAACCTGTTACCATGGTTCTTGACTAACTCTTTTCACTAGGAACTGTCACTTTGTGGGCCATGGTAACACCCTACCTTACTGCAATGTGTATAGGCAGTTTACTGTAGTAGGGCATGCATGGCTTACTGTAGTAGctctgaagatgatgatgatgaaggtatGGATGGCCTATCGGATACAGAGCTGACCTCTGACCTATAGAGGTCAAAGAGGTCGCACGTCTTGACACGTGTCACAGACATTCTAGAACTTTCACGCGTCGAGAATGGATTTTTCCGATGTCTTGAACTCTGACAGAATGAAATGTGATGTAAGCATTTTTACAAACTTGAAGCTCAATTTCCTTGTTCTGTTTGTATTTTTTAATTTGCTGTGGTGTATGTTGGGGCGCTGGGAAGGGGTAAACGTTGGGATAACTGGACTAGAGACATGCAGTACTGTATAGGACACGGAGTTCCACTAACGTGCTTTCAGATTTACCAATAAGCACCATGTTGCAACAAATGTTTCCAGACCGTCAAATTGGAATGATACTGTCATTGAAACGTGGTGCCAACATGAGGGACAGTTGGCTGAGATCagtatgtatacagtatgtatggctTTGGGGTGGGGGGTGAGATG

Function

symbol description
efna3 Enables ephrin receptor binding activity. Involved in ephrin receptor signaling pathway; negative regulation of angiogenesis; and positive regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process. Predicted to be intrinsic component of plasma membrane. Predicted to be active in plasma membrane.

NR:

description
PREDICTED: LOW QUALITY PROTEIN: ephrin-A3

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967633.1 True 3751 mRNA 0.46 5 7941302 8086452

Neighbor

gene id symbol gene type direction distance location
LOC110508507 LOC106575080 coding upstream 313335 7618368 ~ 7627967 (+)
LOC110508431 LOC106575520 coding upstream 440765 7460440 ~ 7500537 (+)
LOC118945274 LOC106575512 coding upstream 493420 7437011 ~ 7447882 (+)
LOC110536044 LOC106575458 coding upstream 583894 7348131 ~ 7357408 (+)
LOC110508415 LOC106605928 coding upstream 770859 7161950 ~ 7170443 (+)
efna1b LOC106574320 coding downstream 61955 8148407 ~ 8159396 (+)
LOC110520790 LOC106606111 coding downstream 84182 8170634 ~ 8178058 (+)
LOC110520877 LOC106574226 coding downstream 158776 8245228 ~ 8249653 (+)
krtcap2 kcp2 coding downstream 163301 8249753 ~ 8254163 (+)
LOC110520886 LOC106575974 coding downstream 178628 8265080 ~ 8266671 (+)
G221141 NA non-coding upstream 6944 7930997 ~ 7934358 (+)
G221077 NA non-coding upstream 90450 7850638 ~ 7850852 (+)
G220680 NA non-coding upstream 133639 7807308 ~ 7807663 (+)
G220679 NA non-coding upstream 134159 7806721 ~ 7807143 (+)
G220668 NA non-coding upstream 155828 7784512 ~ 7785474 (+)
G221153 NA non-coding downstream 215 8086667 ~ 8087262 (+)
G221242 NA non-coding downstream 33177 8119629 ~ 8120076 (+)
G221262 NA non-coding downstream 76842 8163294 ~ 8164016 (+)
G221232 NA non-coding downstream 125207 8211659 ~ 8214241 (+)
G220445 LOC106575489 other upstream 559739 7378258 ~ 7381563 (+)
G220435 NA other upstream 576017 7359668 ~ 7365285 (+)
LOC110508323 LOC106575347 other upstream 954780 6979131 ~ 6988449 (+)
G221299 s10i other downstream 312619 8399071 ~ 8489067 (+)
G221514 NA other downstream 642525 8728977 ~ 8732478 (+)
LOC110520796 fam189b other downstream 674882 8715996 ~ 8766590 (+)
LOC110520836 LOC106605888 other downstream 687595 8772336 ~ 8800464 (+)

Expression


Co-expression Network