efna1b (LOC106574320)


Basic Information

Item Value
gene id efna1b
gene name LOC106574320
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8148407 ~ 8159396 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967642.1
CAGTCAACGCGCCTCGGACTGAACCGTACAAACCGCTGTTAAAGTCAATAGAAGGAGGTCTCAACCCTAGAGAAAAGCAACAGCTGTAGACCAGCACCCTTATCATACAGTTCTTTTGACAGTGTGCACATTCTGCACAGACTTATTCTGCAATAACTGACAGTATTTGTTGGTGTTCTGGTCCAAAATCAGCAGCTATGGATTTGGTGTGGCTGGTGTGTTTGGCTGTGAGCTTCGGAACCTGGTTCGCCTCTGCAGAGAGACATAGCGTCTTCTGGAATAGCACCAACCCAAATTTCCTATGGGATGAGTACACAGTGGAGGTGAAAATCAACGACTACTTGGACATCATCTGTCCTCACTACACGCGCGGGGAGCTGCCATCCCAGGAGGCCGAGCGGTACGTGCTGTACATGGTGGAGAAGGAGGACTATGAGGTGTGTAAGCCCCACTCCTTCGACCAGCTGCGTTGGGAATGTTCCCGGCCCTTCGCTGCCCACGCCCCCGAGAGGTTCTCCGAGAAGTTCCAGCGCTTCACCCCCTTCACCCTGGGCAAGGAgttcagacagggagagagctacTACTATATCTcCAAGCCGCTGCATCACCACGGCCAGGAGTGTCTGAGACTGAAGGTGGATGTGGTTGGACCTCATGGTTCTGGGAAGGCCAAGGCTGACAAAGACAAGGATGGAGCGATGGAGGAAGTGATGGATGAAGGAAAGGgaaagatggggggaggaggaggaggagtgcacAACCCCTCCAACAGGCTTCCAGCCGatGACCCTACTGTGTTGGAGCCTAAGGTTCAGAAGAGTGTGGGTAGTTCAGGTGTTCAGCTGGTCTCCCTGTCGGTCTTCTTCACCCTGTTCCCCGTCCTACTATCCCTGTTATTATATTGACTGAGTTAAAGACCTAGCTACAGAGACACTGTCAACCCAATGCTGGACATTGGCACAGAGAAGATTTTTATAGATATTTTTATATTTGCAACTGGACTGagctgctgtttgtgtgtgtggtgtgtgtgtgtgtgtgattggaaCGTGGATCGTTCCAGAGACTATCTTCAAGAGGATTTTCTGAAGGATGTTTTTCTACATGTTTTTGTAAATGAAAGAGGATGGATGCTATTCTCCATTTGATCTGTATGGACACTTGGAAACCCCACTGACTTTGGAACAGATCTAactggaaatgtgatgtactAATCATTATTAGAAAACTGACAAAGGGATAACTGTTTTCATGATTACCCTGAATTGAAGTT

Function

NR:

description
ephrin-A1-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K05462 EFNA; ephrin-A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967642.1 True 1273 mRNA 0.49 5 8148407 8159396

Neighbor

gene id symbol gene type direction distance location
LOC110513974 efna3 coding upstream 61955 7941302 ~ 8086452 (+)
LOC110508507 LOC106575080 coding upstream 520440 7618368 ~ 7627967 (+)
LOC110508431 LOC106575520 coding upstream 647870 7460440 ~ 7500537 (+)
LOC118945274 LOC106575512 coding upstream 700525 7437011 ~ 7447882 (+)
LOC110536044 LOC106575458 coding upstream 790999 7348131 ~ 7357408 (+)
LOC110520790 LOC106606111 coding downstream 11238 8170634 ~ 8178058 (+)
LOC110520877 LOC106574226 coding downstream 85832 8245228 ~ 8249653 (+)
krtcap2 kcp2 coding downstream 90357 8249753 ~ 8254163 (+)
LOC110520886 LOC106575974 coding downstream 105684 8265080 ~ 8266671 (+)
LOC110520887 LOC106606015 coding downstream 128569 8287965 ~ 8291009 (+)
G221242 NA non-coding upstream 28331 8119629 ~ 8120076 (+)
G221153 NA non-coding upstream 61145 8086667 ~ 8087262 (+)
G221141 NA non-coding upstream 214049 7930997 ~ 7934358 (+)
G221077 NA non-coding upstream 297555 7850638 ~ 7850852 (+)
G220680 NA non-coding upstream 340744 7807308 ~ 7807663 (+)
G221262 NA non-coding downstream 3898 8163294 ~ 8164016 (+)
G221232 NA non-coding downstream 52263 8211659 ~ 8214241 (+)
G221306 NA non-coding downstream 124237 8283633 ~ 8328759 (+)
LOC118945294 NA non-coding downstream 154434 8313790 ~ 8328604 (+)
G220445 LOC106575489 other upstream 766844 7378258 ~ 7381563 (+)
G220435 NA other upstream 783122 7359668 ~ 7365285 (+)
LOC110508323 LOC106575347 other upstream 1161885 6979131 ~ 6988449 (+)
G221299 s10i other downstream 239675 8399071 ~ 8489067 (+)
G221514 NA other downstream 569581 8728977 ~ 8732478 (+)
LOC110520796 fam189b other downstream 601938 8715996 ~ 8766590 (+)
LOC110520836 LOC106605888 other downstream 614651 8772336 ~ 8800464 (+)

Expression


Co-expression Network