Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110520790 |
| gene name | LOC106606111 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 8170634 ~ 8178058 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| TC1-like transposase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036967655.1 | False | 1616 | mRNA | 0.47 | 6 | 8170634 | 8176258 |
| TU252485 | False | 546 | TUCP | 0.49 | 4 | 8170707 | 8172223 |
| TU252486 | False | 235 | lncRNA | 0.51 | 2 | 8171963 | 8172223 |
| TU252489 | True | 2316 | lncRNA | 0.44 | 2 | 8175717 | 8178058 |
8,169,000
8,170,000
8,171,000
8,172,000
8,173,000
8,174,000
8,175,000
8,176,000
8,177,000
8,178,000
8,179,000
8,180,000
8,181,000
8,182,000
8,183,000
8,184,000
8,185,000
8,186,000
8,187,000
8,188,000
NC_048567.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| efna1b | LOC106574320 | coding | upstream | 11238 | 8148407 ~ 8159396 (+) |
| LOC110513974 | efna3 | coding | upstream | 84182 | 7941302 ~ 8086452 (+) |
| LOC110508507 | LOC106575080 | coding | upstream | 542667 | 7618368 ~ 7627967 (+) |
| LOC110508431 | LOC106575520 | coding | upstream | 670097 | 7460440 ~ 7500537 (+) |
| LOC118945274 | LOC106575512 | coding | upstream | 722752 | 7437011 ~ 7447882 (+) |
| LOC110520877 | LOC106574226 | coding | downstream | 68970 | 8245228 ~ 8249653 (+) |
| krtcap2 | kcp2 | coding | downstream | 73495 | 8249753 ~ 8254163 (+) |
| LOC110520886 | LOC106575974 | coding | downstream | 88822 | 8265080 ~ 8266671 (+) |
| LOC110520887 | LOC106606015 | coding | downstream | 111707 | 8287965 ~ 8291009 (+) |
| LOC118945294 | NA | coding | downstream | 137532 | 8313790 ~ 8328604 (+) |
| G221262 | NA | non-coding | upstream | 6618 | 8163294 ~ 8164016 (+) |
| G221242 | NA | non-coding | upstream | 50558 | 8119629 ~ 8120076 (+) |
| G221153 | NA | non-coding | upstream | 83372 | 8086667 ~ 8087262 (+) |
| G221141 | NA | non-coding | upstream | 236276 | 7930997 ~ 7934358 (+) |
| G221077 | NA | non-coding | upstream | 319782 | 7850638 ~ 7850852 (+) |
| G221232 | NA | non-coding | downstream | 35401 | 8211659 ~ 8214241 (+) |
| G221306 | NA | non-coding | downstream | 107375 | 8283633 ~ 8328759 (+) |
| LOC110520859 | LOC106606012 | non-coding | downstream | 240862 | 8415151 ~ 8417910 (+) |
| G221394 | NA | non-coding | downstream | 303044 | 8479302 ~ 8480109 (+) |
| G220445 | LOC106575489 | other | upstream | 789071 | 7378258 ~ 7381563 (+) |
| G220435 | NA | other | upstream | 805349 | 7359668 ~ 7365285 (+) |
| LOC110536044 | LOC106575458 | other | upstream | 817004 | 7348131 ~ 7357408 (+) |
| LOC110508323 | LOC106575347 | other | upstream | 1184112 | 6979131 ~ 6988449 (+) |
| G221299 | s10i | other | downstream | 222813 | 8399071 ~ 8489067 (+) |
| G221514 | NA | other | downstream | 552719 | 8728977 ~ 8732478 (+) |
| LOC110520796 | fam189b | other | downstream | 585076 | 8715996 ~ 8766590 (+) |
| LOC110520836 | LOC106605888 | other | downstream | 597789 | 8772336 ~ 8800464 (+) |
| G221526 | LOC106591640 | other | downstream | 663966 | 8840224 ~ 8908728 (+) |
