XLOC_021576


Basic Information

Item Value
gene id XLOC_021576
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 17412525 ~ 17447163 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044805
GCAAAGGAGGGGTTCGATATAAAGCTATGGTCCGTCTCATCTGCGTTTGGATATGCTCAGCCATTTCACTGGCTTTCCCTTCTACATGAGACTCAAAAAAGTTTTTTCTGGAACATATATTCTGCCGCTGGACTTTAAGGATTTTTACACATGACAGACAGCAAAGGCAAGGTCCACTCAAAGATAACATCAAGACATAATGCATGGACTTTCACATGCCAGATATATGAACGGCAATGTTACTGTTTTTAGACTTGAAGGAATGCTAAACGCTTAAcataaagcagacgtctcacacgtgtgtgtgtgtgtgtgtgaatgcatgtatatatatacactgacCTAGATATGTCTTATATGTTGACATAACTAACCAAGCAGCTCTGTGAGAAAGCATACTTTGGTCCAGGGCTTTTTAATTGTGTTGAGTTGTTTTCAGATACTAACTGGTAGTTTTATTTGTCCAGATATGTTTTCATCTTTGTTTCTCCTTCTCTTTCTCTGCCACCACATACATCAAttctttttgtctttgtaaaATGCCCAGAGGGCTGACGCAGCTCTTTTTTAGTAGAGTGAAATTCTACGCTCAATCCCAGTCATTTCTGTGCATGTACTAACCTTTCACCATCCTTAAAATGAGATCAAACAACATTGAGTTTTCCTTTAATCCCTCACCGTTTGACTCTTTAACACTATCAGACTCTTCTGATGAAACTCTGCTCACACTGGCATTATGTCACGGTGGATTACCCTTCTTTAAACAAAGGCTTTTGTGCTCAAGATCAATTTGATGTCGAAGGATTAGTGCTCAGAACTAGTTTTGCTCTTAACAGAGCCCTAGCCAAAAAGcctgttaaagtaaaaaaaaagaccaaGCAGAAGACTGCAATTCTGTTGAAAAGCATTGTCTTCTGAATCAAAACAAGGCCACCATTATGGATGAGATCAAACGATATACGCTTGTGGCTGGTTATATAGAGCAAAGTTCATTCCCATAATTAGCAGCCCTTAGCTATGACTGCATGCTGTGTTCACTTACTGTTAGAGCAGAGgtagtgattttatttttagagaCGGAAAGACATTCCTTGTATACAACAAAACACTCTGTAGATGAAGTGACAAAGAGCTGTCAAACTATTATCATGACAAATGACAGAAATTAGCCTGTGTAAACTTTCACCAGCAACAATCAATCACATCACAACCATTTTTCACTTTCAATTGCATCAATACATCAGAAATTATGTAaaagacttgtttaaaatgacTTGATAATTGAGTCTCTGAATCATTCTTTCAACCAGTTTGTTCAAAATGTTTATTGTCCTTCTAAACCCTGCCTTGAAAtaaatgcttaattttttttttacaaataggtTCATTTTGGCTCAataccaattctatttttgtaccccttccccttggcccccAAAACCAAGTGTGATGGGGAAGGGCTTTGAAATTGAAAACAATCgggactgctgtagttattccagtagTGCTatattttggtatttatctttaggaaatcactaTTATGTTATTCTAACGATCTAatatggcaataagatcgtaaatatactgtgcatttacaccgtggccatattcatctatgtaaacacaccacaACAATCTTAACATTATAGccgacactgtaaaaagcccaataacagccactagacttttctgacagggtattccagtgtcatagAGAGTCAGAATGTTGGGGAACTGCTATATAGGAGTTATGtttatggattatagattgaAAATTTAGTAGGGGTGGGTTTGGGTctttaagcatgacggtaaaacatgaacgcggtaGTGAATGTATTAAAACGTGCTTGTCTGTGgtaaaaaattcataataatgacaaaaagtactaatttgtggatctccttacatCTGGGTGCTGCGAtcctgctgttgtggctggtgtattctgggaaattttcttattttctaatcccttggttttgagtgtggttcgAATGGGGTATTCACCCCTTACCCTTAACCCTAGGGCAAAGCTGCTtaactctgttcctggagatctaccttcctgcagatttcagctccaaccctgatcaaacacacctgcctataattatcaagaactgttcaggtcctaattaattagttcaggtgtgtttgattagggttggagctgaaatctgcaggaaggtagatctccaggaacatggttgagtaCCCctgccctacgccttcaagctaaggAGAAATGGGACACCCCAACCCTCTTTACGGGAacgcgcaaaatgaggggtagggccTGGATAAAGGGAAAGGCcttaggggtagaattgggattgggcctgagaagtcacctagagttaaacagttgtgcgtaatcatttttgaatccattcagcttaTATCCTGGTCTGACAGAAGCAATTAtctcttagcttagcataaatctatgaatcggattggaccattagcatctcactcaaaaaagaGAGGTTTTAATCATTTTCCTATAAAGCTTAACCTCTCTGTAGTTACACATTGTGTGTCAAGACCCTCAGAAAATGAAAAGCTGCTAGGTCAATATGTCTAgcaactatactctcattctggcataataatcaagggaTTTTGTTGCTGCTTCATGtctgcagcaggcgcaatgatattatgcagcacatGAAAATAGTCCCCAACTAGGTCACTGGGAATCTTTATTCTTTAATCTTAAAGCATGATGTCAGcacaaatgaatatttaaaaataccaaTAGCTCTTTTATAtactacatttttgttttgtggtatttcAGGGATTATATTAATACAAGACAATGCATACTTCTCTTGGGATGTGGGACAAAGCCAGCCTAATCTCACaagaaaacacaaatattttacattttgtcagtttagtgggtgacttatacaaatttgtatgagttcagtcatacgaaaatgtacgattttaaaaaggaggcaccCAACCCTGCCCTTAAACCCATCATTggaggataagcaaattgtacgaatttgtacaaatgaGAATGTAGAAATtcttacaaattagccactaaatcaaaaagttaggaattgccATGCGATTGTTGGCAAAGACCCACTTTTTCGAACTGTGCAATTCTTAGTGTACAAatctgagtgtgcttcacacagatATAGCATTGCTTGCAATAGCATTATATATTGCTGCTCTCTGATGATTTAAAGTGCTTCTTTTATTCTCATTTGTAAGCTGCTTTGGATAAAAGAGTCAGCTAAAggaataaatgtaaatgactgTCCTGTGGTACTATAACTTGATGCACAACAACCAGCCAATCACCTGCTTCATTTGCACATGCTTTGTTAAAAACATTATATGTTGTGTAAATGTCATTTCagcgattgaaaaaaaaaaaaagcttgtgaaACAAAGTGACAGGAAACACATTTTCCATTAAATATTTACTGTTTGTCTGTCAAAAACACTTGCTAGTAAGGTGTGATATAATATGCAGAAGTATTCGTCTGaaacaatattatttacagaAATTATCACTCATTTGAAGAGTAAAATGACTGGTTCATCCAAGAATTAATCTAGTGAGTCACTGAATCAATCACTTAAACATTTGTTCAAAAACAGTATATTTCAGAAATGGCTGTCTGTGGTTAATCAAAAGCAAACATATGAAAAACCCAAATGCATGCTTACATTTTTCATTGAAATTCTAgattaaagagttcacacttagttgatgatttattttaaagtgagtttggcatgctgtcctgggagagagccctaagctcatgagatcctcgagcctggggctccctcccgttagcagGGCaagagaggggagtttgagctcagatatGTCTTGAGAACCCCCCCCTTACTTAGCACTAATGACAAATTAGGAATTGCTGTATAGAGATATACTGCTGGTTAAGAGCTTGACTATAGTGTCAATTTACTTTAgatgcatgtctttgggctgggaggaaactggagaatgCGAGGGAAACCCACAAGAccccggggagaacatgtaaactccacacagaaatgtcaactggcttgTTTAAGGCTTAAACCCTTGCTGTGATGCAACGgtgttaaccactgggccaccgtgccatccTATAAAGGGAAAGGTgaaggagaaggggtggaagggggtattcttcaagatgaagataactggaatcatctgattggtgaatcatgttttaGCTAATGCAGGAGCAGCTTAGATCAATTATAAGCACATGATCTTctctaaattagtttatgaataaacattACTCATGCATATACTGTATAGGAGCATGTAGCCTTTTAAAGTTTACTTCTTTGTGTATATTTAATAGtgtttcatacatttttttactaTGAAAAAATTCTGGACCAGTTAATCGCTTTTGGGAACTTTACTTATACATTATTATAATGATGTATATAATGATTATTACGGATGAGAGGGAGAGAAATGCATAACATGTACTGTTTGCAAATTTTAGGCACTGCATACTCTGGTGTATGTGTAAAAGTCGTGCTTTGGCATTAAAATTGTGGCTTCCACAACCCTAAAACCACATAACCACAACCCTAAAAACCACAAccacataaaacaattcagttcACAATTTGAGTAAAACTGGGACAAAGGGTTTTTCTTTGACTTTTGACACACCTATGATTCACCTGTCTACaacaacatgtttattttatgtgGAGTCAATAAGTCCTGTCTTTATTTAAACCACGATAACAGTTTTTGGTTTTCCAAAAAGGCTTAGACTTTGACCAGTATTTTCCCAGAAATTATTTTGTTCCATGTTTATGTCGCtctgatgagaatatttattcCCCaaccataaaacaaataaatctcaTTCAGCAGTGTCCTCAACGGCTCATTCTTTGCTATATGTTTCTTCCAGGTTCCAAAGAACACTCCACTTTCCAAGCATTCGGTTCTGCCATATTTACACGTAAAAGCTGACCATGACCACTGTGAATGCCCCCGTGTGTCTGCTCGCTCGGAATGAGTTTTATCGGAGTAAGTGCAGCTCTATTTTTAGCTCTCTGCTGTTTAACCAGCCGCTGAACACGTGTTATTCTGACTGCTGTTTGCTGAGCATTCTCATGAATGAACTTGAACCTGCATCTACAGCACACACTGTTCCAATTTTAGCTTTATCAGACGACGTAGACATTGACGAATcggttaaacaaataaaaacattgctCGTTTTGAGAATTGACAGAAATAGACCTAAATTCATTGTTTAAATGGAAAGGTTAAAGGGACAATATATAAGATTTTTTGGtatcattttatttactttaacgcattttgttgaatttgttCCAACTAGTtttcaatagattataagtagactgttaggttggggttagggttagtgttagttgacatgtacttgcaaagtttcataTAGTCAGTTAATGTCTGTTGAAAGGGCAGTATCAACACATATTAAGcagagtctactaatactcaaaagaGAAATAATTGGCATGTTGTTGCAAttcaacttttagtcaacaaaatttGAAATAGGGACCAAAATAAAGTCTTATCAATTGTTTCTGTTCAAAACATCTAAAAACCACTAGAAGTTACATATTTTGCTGACTTTAGTACTTATATTGTCCCTAATATTTTGGTGAATGTTAAAATCCAGAAaaatccaatagtatctggatttATGATCCTTTATGatgcctttatgatgcaagctgagattgcatcactcagcgatgcaatgtcagacacaatgcactcaaatggagcgagtgaggtcactgtgatgggtagggttaggggtggggttaggtgagccctttaaaaagcattgaatgcagctcagattgcactgcaccaggtctgcatcccgACCCCTCTcgaaaaataagcaattttatctAGTAATTGGTCCATATTCTGTCACCATGCTAATGAGGTCATAAATCCTCAACTTTCAGTTTggttatagaaaacaaaaatcccaaagatgctttaatatgttgtgcattttattaatctgcactgagcagcattataacagttCCTTAAAACACATGTAATATGGGGAAAACACTGCTTGTCGTGCTCGTCTCTCATCAACAATTGCAGCAGCGGTCTTTCAGTTGGACAGCTTTCAGTTGGACTCTGCTTTATACTACTATGACAATAAGTCTTGACTACTCTAGGTCATCCATCcaacatgatttctgcagaaGTAAAGCAatgtctttgtttgttgtgaatatgcaccctctagtggTTAAAATACCACACAGTGCCTTTAATAGACCACTTAGAAATTCTCAATTTCTCTTGATTTATATGAGTGAAAcagaattatttagttttattctgtaaactacggATGCGATTTTTcccaatgtaaaaataaatataaaaaatataatttatgcgtgcaaaaattaacaaaaaggTGCCATTGttatatgtttatgtttaatcTTTAGACTACGCCATTTACCTGATTATcaataacatcaaataaaaacttCTGTTAATTATGATCTGGCCAACAGTCtggtttgaaagaaaaaaaatatgatctAATGgacaatatgtttattttatttacaaaaaaaatgtatacatacattgacaaatattagcattttactcaaacccaaaTAAAGCCAGAAGAACTAAAAAGTCTCCACATTTTATATCTCCAAAGctgtatgttttattaaaaactctTAATCCTGAATAAATTGCCATTTCAGCAGGGATTACAcgttttgattttcttttttatttctgcaattcactcttttttttaatgaaatgcatgCCTAAGAGGATTTACTCAGAGGCATCTGTCCGACAGACAAAATGAAGGCTGTCGAAAATCTTTCTGATAACTTAATGGAACCAAAGCAAAGACAACTGACTGTCTGGGTGACCAAATCCAAACACCAAGatttttccaaacctttgagCAACGGCTGGACAATCAATGTGGTTTTAAGGAACCCGGCATCTAGCGGAAACTCTTCCAAACGTCCTGCTGATCGTGTGGTCAAGTAGACACCTGCAAAAAAGCTGCAGAGAGCTGAAAAAACTGTGCTTTGCTGTACACGCACATTTGAATATGCTGCTTTAGTGATACTATTTGTTTAAAACTTGTTTAACTTAAGGCTAAAGAGTGTTTAAAGATCTTCActactgacaaaagtcttgttgcttatccacgtttaaggaacaacaaataataacttgacttccagttaatcatttggtatcagaagtggtttatatgaaagacaaaggcctctagattatgcttgttttaccaaaatgaaatatgattatgccttgatttttagtcatttaattaggacagtgaggtctgactttgcttagacaaaagtcttgtcggttaacagaaatactgtacaataagaatataaagtcatggtgccgtgggaaaataatttaaattatgtatGACTCTAaggagcttggaggactgcatacatacatctctgaaatgactctaataacttattgacaaagaaagcgttcttgcaggactcccagagtaaTTCTTTGGATTCAATGCCTCGatcttaacccagacatgctcaaaaatgttcatgtctggtcacTAAGCTGTCCAATcgtggagcactttgaccttctgtgctttcaggaactttgatgtagaggctgaagtatgaggagcgctgctgaagaatttgccctctcctgtggtttgtaatggaatgggcagcacaaatgtcttgatacctcaggcagttgatgttgccatccactctgtagatctctAGCATGCtgccatactgaatgtaaccccaaaccatgatttttccttcaccaaacttgactgatttctgtaagaatcttgggtccatgtgggatGCAGTatacttctgcagtatttgtgatgattgggatgcagttcaacagatgattcatgaaaaataatctaccttctgccgcttttccaaaTGAccgactagaagtcaagttaatatttgttgctcttacaactggaattgaAGACAaaacatttgtcaggtagtgtaaggcCTTATTTGCTATAATGTTATAGCTTATGCTACTGTTCAGAAACTTTGGGTCATTAAATGTTTTATACTGattaatgctgcatttatttgatatacAGTGAGATTTATATGGAAAGTTATTGCAGTTTAAAATTAAAGAAGCATTAGGAAAAAGGCAGGAAAAGGGGGGAATTTGTGCTGGGTaatattttacctaattattttGAATTGGGGTACAATAACTGTTTTCATCCACCTACTGTATGTTTGAGCTTTAAggatattgcataaaaaataagcaattttacaTACATTCTGATATTTACATCAAAACCTAAAGCTATATGTGCAGTCAGTTGAGTCAGAATGTTTTTTTAGATGAAAATATTTCTGTACAATGGAAACACAATTACTGAATAAATGCCTTGATTCACatgaaaaatatgacattttgttTCAGCATGCAGATGTGGTGATTGCTGTGTTTATTATAATCTAAATATCCGAGCAAAAGTCCATTATCAGAATGAATTTGTGTAATTACCTCCCAGAACTGACTCACACGTGTGTGTTCCAAAACACCAGGCACCCGCTTCCAAACTCAAGATAAGATGAAGCGATTGTTGTTGTGTGTCATCTGCCGCTCTGCTCCGAG
>TCONS_00042834
ATGACCACTGTGAATGCCCCCGTGTGTCTGCTCGCTCGGAATGAGTTTTATCGGAttaaagGGCCTGCCATCTCATCCTCATCATCTATTGGTGCTAAAAgctACACGGGGAAGATTATTGTACATCACAtaagattacccaataaattGTCTGGACAT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0007275 multicellular organism development biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:1902680 positive regulation of RNA biosynthetic process biological_process
GO:0048856 anatomical structure development biological_process
GO:0051254 positive regulation of RNA metabolic process biological_process
GO:1903508 positive regulation of nucleic acid-templated transcription biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0032501 multicellular organismal process biological_process
GO:0010557 positive regulation of macromolecule biosynthetic process biological_process
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0098643 banded collagen fibril cellular_component
GO:0098644 complex of collagen trimers cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005583 fibrillar collagen trimer cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0044877 protein-containing complex binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000115264

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044805 False 8762 lncRNA 0.37 3 17412525 17421436
TCONS_00042834 True 159 mRNA 0.44 9 17417539 17447163

Neighbor

gene id symbol gene type direction distance location
XLOC_021575 ptk6b coding upstream 8514 17387325 ~ 17404011 (+)
XLOC_021574 SRMS coding upstream 27276 17354154 ~ 17385249 (+)
XLOC_021572 nol4lb coding upstream 66270 17220986 ~ 17346255 (+)
XLOC_021573 NA coding upstream 157768 17254498 ~ 17254757 (+)
XLOC_021571 BX927275.1 coding upstream 200719 17146315 ~ 17211806 (+)
XLOC_021578 NA coding downstream 25956 17473119 ~ 17477448 (+)
XLOC_021579 BX649300.4 coding downstream 54151 17501314 ~ 17501428 (+)
XLOC_021580 gid8b coding downstream 62631 17509794 ~ 17550653 (+)
XLOC_021581 CR407550.1 coding downstream 209673 17656836 ~ 17659102 (+)
XLOC_021582 NA coding downstream 323261 17770424 ~ 17776345 (+)
XLOC_021565 AL732515.2 non-coding upstream 553492 16858917 ~ 16859033 (+)
XLOC_021561 NA non-coding upstream 613803 16798100 ~ 16798722 (+)
XLOC_021556 CU041345.1 non-coding upstream 966485 16444961 ~ 16446040 (+)
XLOC_021583 CR381647.3 non-coding downstream 335345 17782508 ~ 17783044 (+)

Expression


Co-expression Network