LOC110520886 (LOC106575974)


Basic Information

Item Value
gene id LOC110520886
gene name LOC106575974
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8265080 ~ 8266671 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598333.2
ctctgagaacaGGCTCTCAGACATCGTCTCTTGGATACACAGGCTAAAACACACAATCAGAGGGGCGTTGCATGCTCGCTTTAAATTCTTGTAGCTCTTGCGCAGTTTGATACTTCCCCACCCTGTTCTCCAGCAGCACTCAGTTCGtgTGTCAATATCTGCAGCCATGCCGTCTGAGTTGGAGCGTTCCATGGAGTCCCTGATCATGGTGTTCCATCGCTATGCTGAAAAGGATGGTGACGGCAACACACTGAGCAAGAAGGAGCTGAAAGAGCTGATGCAGACAGAACTGGGCAGCTTCCTGAAGtCCCAGAAGGACCCAGCCGCTATAGACAAGATCATGAAGGATCTGGACCAGAATGGTGATGGGAAGGTGAACTTTGAGGAGTTTGTCTCTCTGGTGGTGGGCCTCTCCATCGCCTGTGAACAGCTCTACCAGCTCCACACCCAAAAGGTTGCTGCTAAGAAGTGAGGGAGGACAGGACAAGGAGAAAGAGAAGCAGAGATGGATGCTTTTCTATGTCATTTTGCTTTTCTATATGTCAAATAAGTCATTTTATAACTAAGTCTTACTGTTGTGAATAAACACAGGTTTTCCTACTCTC
>XM_036967709.1
TAGGTTATCTACTGTAATAAACAGtgTGTCAATATCTGCAGCCATGCCGTCTGAGTTGGAGCGTTCCATGGAGTCCCTGATCATGGTGTTCCATCGCTATGCTGAAAAGGATGGTGACGGCAACACACTGAGCAAGAAGGAGCTGAAAGAGCTGATGCAGACAGAACTGGGCAGCTTCCTGAAGtCCCAGAAGGACCCAGCCGCTATAGACAAGATCATGAAGGATCTGGACCAGAATGGTGATGGGAAGGTGAACTTTGAGGAGTTTGTCTCTCTGGTGGTGGGCCTCTCCATCGCCTGTGAACAGCTCTACCAGCTCCACACCCAAAAGGTTGCTGCTAAGAAGTGAGGGAGGACAGGACAAGGAGAAAGAGAAGCAGAGATGGATGCTTTTCTATGTCATTTTGCTTTTCTATATGTCAAATAAGTCATTTTATAACTAAGTCTTACTGTTGTGAATAAACACAGGTTTTCCTACTCTC

Function

NR:

description
protein S100-A1-like isoform X1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598333.2 False 605 mRNA 0.48 3 8265080 8266671
XM_036967709.1 True 482 mRNA 0.46 3 8265281 8266671

Neighbor

gene id symbol gene type direction distance location
krtcap2 kcp2 coding upstream 10917 8249753 ~ 8254163 (+)
LOC110520877 LOC106574226 coding upstream 15427 8245228 ~ 8249653 (+)
LOC110520790 LOC106606111 coding upstream 88822 8170634 ~ 8178058 (+)
efna1b LOC106574320 coding upstream 105684 8148407 ~ 8159396 (+)
LOC110513974 efna3 coding upstream 178628 7941302 ~ 8086452 (+)
LOC110520887 LOC106606015 coding downstream 21294 8287965 ~ 8291009 (+)
LOC118945294 NA coding downstream 47119 8313790 ~ 8328604 (+)
LOC118936617 LOC106606009 coding downstream 62476 8329147 ~ 8331744 (+)
s100w LOC106574877 coding downstream 78767 8345438 ~ 8350294 (+)
LOC110520890 s10i coding downstream 132366 8399037 ~ 8401940 (+)
G221232 NA non-coding upstream 50839 8211659 ~ 8214241 (+)
G221262 NA non-coding upstream 101064 8163294 ~ 8164016 (+)
G221242 NA non-coding upstream 145004 8119629 ~ 8120076 (+)
G221153 NA non-coding upstream 177818 8086667 ~ 8087262 (+)
G221306 NA non-coding downstream 16962 8283633 ~ 8328759 (+)
LOC110520859 LOC106606012 non-coding downstream 150449 8415151 ~ 8417910 (+)
G221394 NA non-coding downstream 212631 8479302 ~ 8480109 (+)
G221303 NA non-coding downstream 235066 8501737 ~ 8538421 (+)
LOC118945274 LOC106575512 other upstream 817203 7437011 ~ 7447882 (+)
G220445 LOC106575489 other upstream 883517 7378258 ~ 7381563 (+)
G220435 NA other upstream 899795 7359668 ~ 7365285 (+)
LOC110536044 LOC106575458 other upstream 911450 7348131 ~ 7357408 (+)
G221299 s10i other downstream 132400 8399071 ~ 8489067 (+)
G221514 NA other downstream 462306 8728977 ~ 8732478 (+)
LOC110520796 fam189b other downstream 494663 8715996 ~ 8766590 (+)
LOC110520836 LOC106605888 other downstream 507376 8772336 ~ 8800464 (+)
G221526 LOC106591640 other downstream 573553 8840224 ~ 8908728 (+)

Expression


Co-expression Network