LOC110520887 (LOC106606015)


Basic Information

Item Value
gene id LOC110520887
gene name LOC106606015
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8287965 ~ 8291009 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598335.2
TGTCTTTATAAAATCTTTCCCACAGTTCGTGCGCAGTAGATTCAACATCATTGGTATATATTCAGCAGTACCCTAGTTCCCCACCCTGTTCTGATAGCGTCTCTCCTCTGTTTGTGTATCCTTCTCTCTGCAGCCATGCTGTCTCAGTTGGAGAGATCCATGCAGTCCCTGATCACGGTGTTCCATCGCTATGCCGACAAGGACGGTGACTGTAACACACTGAGCAAGAAGGAGCTGAATGAACTCATGCAGTCAGAACTGGGCAGCTTCCTGAAgtCCCAGAAGGACCCAGCCGCCATAGACAAGATCATGAAGATTCTGGACCAGAATGGTGATGGGATGGTAAACTTCGAGGAGTTTGTCTCCCTGGTGGTGGACCTCTCCATCGCCTGTGAACAGATCTACCAGCTCCACATCATGAAGGCTGCCGCTAAGAAGTGAGGGAGGACAGGACAAGGAGAAAGAGAAGCAGA

Function

NR:

description
protein S100-A1-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598335.2 True 473 mRNA 0.50 3 8287965 8291009

Neighbor

gene id symbol gene type direction distance location
LOC110520886 LOC106575974 coding upstream 21294 8265080 ~ 8266671 (+)
krtcap2 kcp2 coding upstream 33802 8249753 ~ 8254163 (+)
LOC110520877 LOC106574226 coding upstream 38312 8245228 ~ 8249653 (+)
LOC110520790 LOC106606111 coding upstream 111707 8170634 ~ 8178058 (+)
efna1b LOC106574320 coding upstream 128569 8148407 ~ 8159396 (+)
LOC118945294 NA coding downstream 22781 8313790 ~ 8328604 (+)
LOC118936617 LOC106606009 coding downstream 38138 8329147 ~ 8331744 (+)
s100w LOC106574877 coding downstream 54429 8345438 ~ 8350294 (+)
LOC110520890 s10i coding downstream 108028 8399037 ~ 8401940 (+)
s10i s10i coding downstream 117012 8408021 ~ 8410803 (+)
G221232 NA non-coding upstream 73724 8211659 ~ 8214241 (+)
G221262 NA non-coding upstream 123949 8163294 ~ 8164016 (+)
G221242 NA non-coding upstream 167889 8119629 ~ 8120076 (+)
G221153 NA non-coding upstream 200703 8086667 ~ 8087262 (+)
LOC110520859 LOC106606012 non-coding downstream 126111 8415151 ~ 8417910 (+)
G221394 NA non-coding downstream 188293 8479302 ~ 8480109 (+)
G221303 NA non-coding downstream 210728 8501737 ~ 8538421 (+)
G221406 NA non-coding downstream 220770 8511779 ~ 8512379 (+)
LOC118945274 LOC106575512 other upstream 840088 7437011 ~ 7447882 (+)
G220445 LOC106575489 other upstream 906402 7378258 ~ 7381563 (+)
G220435 NA other upstream 922680 7359668 ~ 7365285 (+)
LOC110536044 LOC106575458 other upstream 934335 7348131 ~ 7357408 (+)
G221299 s10i other downstream 108062 8399071 ~ 8489067 (+)
G221514 NA other downstream 437968 8728977 ~ 8732478 (+)
LOC110520796 fam189b other downstream 470325 8715996 ~ 8766590 (+)
LOC110520836 LOC106605888 other downstream 483038 8772336 ~ 8800464 (+)
G221526 LOC106591640 other downstream 549215 8840224 ~ 8908728 (+)

Expression


Co-expression Network