LOC118936617 (LOC106606009)


Basic Information

Item Value
gene id LOC118936617
gene name LOC106606009
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8329147 ~ 8331744 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967704.1
GGCGTGGCCTGTTCTCCATAAACTCCAGAACAATCTTTCCCACAGCTCTTGCGCAGTAGATTCAGCATCATTGGTATATATTCAACATCATTGGTATATATTCAGCAGTACGCTACTTCCCCACCCTGTTTTGTTAGCGTCTCTCCACTGTTTGtgTATCCTTCTCTGCAGCCATGCCGTCTCAGTTGGAGAGTTCCATGGAGTCCCTGATCACGGTGTTTCATCGCTATGCCGACAAGGACGGTGACTGTAACACACTGAGCAAGAAGGAGCTGAAAGAGCTGATGCAGACAGAACTGGCCAGCTTCCTGAAGtCCCAGAAGGACCCAGCTGCCATAGACAAGATAATGAAGGATCTGGACCAGAATGGTGATGGGAAGGTGAGCTTCGAGGAGTTTGTCTCTCTGGTGGTGGGCCTCTCCATCGCCTGTGAACAGATCTTCCAGCTCCACACCCAAAAGGTTGCTGCTAAGAAGTGAGGGAGGACAGGACAAGGAGAAAGAGAAGCAGAGATGGATGCTTTTCTATATGTCATTTTGCTTTTCTATACGTCAAATAAGTCATTTTATAACTAAGTCTTACTGTTGTGAATAAACACTGGCTTTCCCACTCTGTA

Function

NR:

description
s100 calcium binding protein, partial

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967704.1 True 616 mRNA 0.47 3 8329147 8331744

Neighbor

gene id symbol gene type direction distance location
LOC118945294 NA coding upstream 922 8313790 ~ 8328604 (+)
LOC110520887 LOC106606015 coding upstream 38138 8287965 ~ 8291009 (+)
LOC110520886 LOC106575974 coding upstream 62476 8265080 ~ 8266671 (+)
krtcap2 kcp2 coding upstream 74984 8249753 ~ 8254163 (+)
LOC110520877 LOC106574226 coding upstream 79494 8245228 ~ 8249653 (+)
s100w LOC106574877 coding downstream 13694 8345438 ~ 8350294 (+)
LOC110520890 s10i coding downstream 67293 8399037 ~ 8401940 (+)
s10i s10i coding downstream 76277 8408021 ~ 8410803 (+)
LOC110520854 LOC106606011 coding downstream 80910 8412654 ~ 8414880 (+)
LOC110520859 LOC106606012 coding downstream 83407 8415151 ~ 8417910 (+)
G221306 NA non-coding upstream 388 8283633 ~ 8328759 (+)
G221232 NA non-coding upstream 114906 8211659 ~ 8214241 (+)
LOC110520790 LOC106606111 non-coding upstream 151089 8170634 ~ 8178058 (+)
G221262 NA non-coding upstream 165131 8163294 ~ 8164016 (+)
G221394 NA non-coding downstream 147558 8479302 ~ 8480109 (+)
G221303 NA non-coding downstream 169993 8501737 ~ 8538421 (+)
G221406 NA non-coding downstream 180035 8511779 ~ 8512379 (+)
G221312 NA non-coding downstream 183706 8515450 ~ 8518668 (+)
LOC118945274 LOC106575512 other upstream 881270 7437011 ~ 7447882 (+)
G220445 LOC106575489 other upstream 947584 7378258 ~ 7381563 (+)
G220435 NA other upstream 963862 7359668 ~ 7365285 (+)
LOC110536044 LOC106575458 other upstream 975517 7348131 ~ 7357408 (+)
G221299 s10i other downstream 67327 8399071 ~ 8489067 (+)
G221514 NA other downstream 397233 8728977 ~ 8732478 (+)
LOC110520796 fam189b other downstream 429590 8715996 ~ 8766590 (+)
LOC110520836 LOC106605888 other downstream 442303 8772336 ~ 8800464 (+)
G221526 LOC106591640 other downstream 508480 8840224 ~ 8908728 (+)

Expression


Co-expression Network