s100w (LOC106574877)


Basic Information

Item Value
gene id s100w
gene name LOC106574877
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8345438 ~ 8350294 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598332.2
AAACAAGCAAATACATGCCAAATACAATTAAGGAATAAGCTTCTCTATTCACACCCTCAAAACAAGATCGAACATTATATTGACCTTTAAAACATGAATTAATGCAAATGATAGCATTGGCACATGACCATTTGAGATCAAGTCTGATGGAGCAGGTTTGGGTGGAGCTGACCTCATTTTAGGGCGTCAGTGGTTGCTTGTGGGCTGATCATGTGTCTGCTATGCTTTAGGGGGTGTTTTTCACTTTAAGAGGAAActtttcttctctctgtctcacatcaGTCTCACATCAGGACCCAGCCGGCCAGCTACACATATCATAGATCTTATCTTCTGCTCTGAggtaCAGTATGTCTTGTCTGGAGAAGGCCATTGTATCCATGGTGGAGGTGTTTGAGGAGTATGCTACAAAGGATGATAAGAATCGCCAGCTTAGCGGTACAGAGCTCGCAGAGCTGATGAAGAAAGAGCTGGCCAGCCCAGAGTTCcacggaAAGGTGGAACCAGCAGTGCTCCAGGAGGCGATGACCAACCTGGATAAGAACCATGATGGGGAGATCAACTTCAGAGAGTTCTCCATGTTCTTGGCTACTCTGGCCAGGGGCTACTACAGAGCCAGAAACAAGGGCAAGGGCAACAAGGGCAAGCCTGACAAGCCTGAATGAGGGGCGAAAAAGAACCTGTTGACAAGTGTGGCCAGTatcgagacacagacacacactgcttTTCTATGATAGAAGAGAGAAAATGATACACTTACTGTAACTTGTATGGTGCTTTTAAGATGTCTTCTCAACATTTCCcctgttttttaaattaaatctGACTTGCTTACTA

Function

NR:

description
PREDICTED: protein S100-A5-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598332.2 True 837 mRNA 0.45 3 8345438 8350294

Neighbor

gene id symbol gene type direction distance location
LOC118936617 LOC106606009 coding upstream 13694 8329147 ~ 8331744 (+)
LOC118945294 NA coding upstream 17213 8313790 ~ 8328604 (+)
LOC110520887 LOC106606015 coding upstream 54429 8287965 ~ 8291009 (+)
LOC110520886 LOC106575974 coding upstream 78767 8265080 ~ 8266671 (+)
krtcap2 kcp2 coding upstream 91275 8249753 ~ 8254163 (+)
LOC110520890 s10i coding downstream 48743 8399037 ~ 8401940 (+)
s10i s10i coding downstream 57727 8408021 ~ 8410803 (+)
LOC110520854 LOC106606011 coding downstream 62360 8412654 ~ 8414880 (+)
LOC110520859 LOC106606012 coding downstream 64857 8415151 ~ 8417910 (+)
LOC110520795 LOC106594151 coding downstream 67649 8417943 ~ 8421019 (+)
G221306 NA non-coding upstream 16679 8283633 ~ 8328759 (+)
G221232 NA non-coding upstream 131197 8211659 ~ 8214241 (+)
LOC110520790 LOC106606111 non-coding upstream 167380 8170634 ~ 8178058 (+)
G221262 NA non-coding upstream 181422 8163294 ~ 8164016 (+)
G221394 NA non-coding downstream 129008 8479302 ~ 8480109 (+)
G221303 NA non-coding downstream 151443 8501737 ~ 8538421 (+)
G221406 NA non-coding downstream 161485 8511779 ~ 8512379 (+)
G221312 NA non-coding downstream 165156 8515450 ~ 8518668 (+)
LOC118945274 LOC106575512 other upstream 897561 7437011 ~ 7447882 (+)
G220445 LOC106575489 other upstream 963875 7378258 ~ 7381563 (+)
G220435 NA other upstream 980153 7359668 ~ 7365285 (+)
LOC110536044 LOC106575458 other upstream 991808 7348131 ~ 7357408 (+)
G221299 s10i other downstream 48777 8399071 ~ 8489067 (+)
G221514 NA other downstream 378683 8728977 ~ 8732478 (+)
LOC110520796 fam189b other downstream 411040 8715996 ~ 8766590 (+)
LOC110520836 LOC106605888 other downstream 423753 8772336 ~ 8800464 (+)
G221526 LOC106591640 other downstream 489930 8840224 ~ 8908728 (+)

Expression


Co-expression Network