LOC110520890 (s10i)


Basic Information

Item Value
gene id LOC110520890
gene name s10i
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8399037 ~ 8401940 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967731.1
ATCAGATAAAGAGGgacaaggagaggaaaggggaggggagagtggggtgtGGTAATCAATGTTTAAAACCAACagcccatccctctcttcctcactccctctctctctctttctctgactgtCCAACTCCTCGCACAACTTCGtcACCATGGCACAGGTCCAGCAGGGTATGGCATTGCTCATCTCAGCCTTCCACAAGTACTCTGGCAAGGAGGGCGACAAGACGACCCTGAGCAAGGGAGAACTCAAAGATCTGCTCAACGCTGAGCTTGGAGAGATGATGGGGAAAAACACTGACCAGGCAAAGGTTGACAAGATCTTCAAAGATCTGGACGCTAACTCAGATGGCAGTGTGGACTTCCAGGAGTATGTCACACTGGTGGCCTGCCTCACCATGGTGTGCAATGAGTTCTTCACCAAGAAGTGAAACAGCTCCCCCTGCCCACTCTCCACAGAACAGCAGCTCTTGCTCCATGAGTGAATTCATGATAAGATTAGCAAGATCCTCAATGCAGGTTCAAAGGGACAGAGATGCAggtttacacacatacacagaaaaaGGGTTGGGTTGATTATACACaccacacatagacagacaggtgAAGGACACAGACACTGACATGTACACATACAGACATATAGGCTACTATCTCATGAGATGGAGAGGAAGCTCTTTGGTTTGTTTAAAGTGAAAAATGAAATAAACTATTTTAATATGTTTGGAAGAAA

Function

NR:

description
Ictacalcin

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23761 S100A4; protein S100-A4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967731.1 True 729 mRNA 0.47 3 8399037 8401940

Neighbor

gene id symbol gene type direction distance location
s100w LOC106574877 coding upstream 48743 8345438 ~ 8350294 (+)
LOC118936617 LOC106606009 coding upstream 67293 8329147 ~ 8331744 (+)
LOC118945294 NA coding upstream 70812 8313790 ~ 8328604 (+)
LOC110520887 LOC106606015 coding upstream 108028 8287965 ~ 8291009 (+)
LOC110520886 LOC106575974 coding upstream 132366 8265080 ~ 8266671 (+)
s10i s10i coding downstream 6081 8408021 ~ 8410803 (+)
LOC110520854 LOC106606011 coding downstream 10714 8412654 ~ 8414880 (+)
LOC110520859 LOC106606012 coding downstream 13211 8415151 ~ 8417910 (+)
LOC110520795 LOC106594151 coding downstream 16003 8417943 ~ 8421019 (+)
LOC110520873 LOC106605892 coding downstream 34192 8436132 ~ 8457492 (+)
G221306 NA non-coding upstream 70278 8283633 ~ 8328759 (+)
G221232 NA non-coding upstream 184796 8211659 ~ 8214241 (+)
LOC110520790 LOC106606111 non-coding upstream 220979 8170634 ~ 8178058 (+)
G221262 NA non-coding upstream 235021 8163294 ~ 8164016 (+)
G221394 NA non-coding downstream 77362 8479302 ~ 8480109 (+)
G221303 NA non-coding downstream 99797 8501737 ~ 8538421 (+)
G221406 NA non-coding downstream 109839 8511779 ~ 8512379 (+)
G221312 NA non-coding downstream 113510 8515450 ~ 8518668 (+)
LOC118945274 LOC106575512 other upstream 951160 7437011 ~ 7447882 (+)
G220445 LOC106575489 other upstream 1017474 7378258 ~ 7381563 (+)
G220435 NA other upstream 1033752 7359668 ~ 7365285 (+)
LOC110536044 LOC106575458 other upstream 1045407 7348131 ~ 7357408 (+)
G221514 NA other downstream 327037 8728977 ~ 8732478 (+)
LOC110520796 fam189b other downstream 359394 8715996 ~ 8766590 (+)
LOC110520836 LOC106605888 other downstream 372107 8772336 ~ 8800464 (+)
G221526 LOC106591640 other downstream 438284 8840224 ~ 8908728 (+)
G221525 LOC106605893 other downstream 445896 8847836 ~ 8878616 (+)

Expression


Co-expression Network