LOC110520844 (LOC106605887)



Basic Information


Item Value
gene id LOC110520844
gene name LOC106605887
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8466936 ~ 8495390 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036967789.1
ACCGCACAGTTCCAGCTGcatagcagagagagaagagaggagagggaaatgaacagagagggaggagagaagaggagcaggaaTAAAGAGAGACAAGGGAGAGGAATGATCACAGAGCTTACAGtaTCTGAGCAGGGTCCCCACCAGCGTAATCTATTGAGGGAGCTACTGAGGGACTATAACCGTATGGAGAGACCTGTTGCCAACGACTCTCTACCACTCACTGTCCGATTCTCCTACACTCTCTTACAAGTCATGAATGTGGATGAGAAAAACCAGATTCTCACCACTAATGCCTGGCTTCAGATGCAATGGTTTGACCACTACCTTCAGTGGAACCAGTCAGAGTACCCTGGAGTGAAAACCCTTCGCTTCACTACTGACCAGGTCTGGATACCTGATATACTACTGTACAACAgTGCCCATGATAAATTTGATGCCACCTTTAAGAGCTATGTGCTGGTCAACTCCAGTGGATTCTGTGAGTACCTACCTCCAGGTATTTTCAGCAGTGCGTGTGAAGTGGACGTGCGTTGGTTTCCCTTTGACGTCCAGCACTGTGAGCTGAAGTTTGGCTCGTGGACGTTTGACGGCTGGCTGCTGGACCTCCAGATGCAGGAGGCTGACCTGTCAGGATACATGTCCAATGGAGAGTGGGAACTGCTGGGTGTACCAGGTGATCGTCATGAGATATTTTATGAGTGCTGTACAGAGCCCTACTCTGATGTGACCTTTGTTGTGACCCTACGACGGAGAACTCTATTCTACGCTCTCAACCTCCTCGTCCCCTGTGTTCTCATCTCCTCCTTGACACTGTTGGTATTTCTACTGCCAgcccaatcgggggagaagatcggtctgggCATTACAATTCTTCTCTCTCAGACTTTCTTCATGTTGCTTGTGGCTGAGATTATGCCAGCTACCTCAGACTGCATACCACTGATAgGTCAGTATTTTGTGAGTACCATGGTTACCGTAGGGATGTCAGTGGTGGCGACTGTAGTTGTACTTCAGTACCATCACCACGACCCCAACAGTGGAGACATGCCTCAATGGgttGAGTTGGTTCTACTCCAGTGGGTTCCATGGTTTCTGAGGATGAAGTGTCCAGAAGAGTGGGGTGAGCTCACACCCCAGCACAGCCCCTCCAACCCCCAGACCAAGACCTGCTCCTctgcccctcccaccaccaccaccccagcccCCTTAACCTTCCCCCAGAGCCTCACCTCTCTGCAGGCCAGTCTAAGCCAGCTCAGCCAGCCCCTACCACACCCACCTTCCAACCCTACCCTCCAGTCCTATCCCAACTATAATCCAAACCCCCAGCCTAATATCCACCTTAACCCAAATCGATATCCCCAGCCCCTTCTTAACCTACACCCCAATCTCCCCTCCATCCCCCACGCTCAGCCGAATGGACACCTGCCATACATGGGCTTCCAGAGTCCTCCTGAACCTGACCCTGCTGtcacctggagaggaggaagaggaggaggagaagaaagaagggGTTCTGACACCCgcatcctccaccaccacccaccctccTCCACAATGTTGGGAAGCCCCCGTTCACAACCCCCCACATCTCCAGACCCTGACCCCTCATCCTCAGGTTCCAGCTGTGTGGAGGATGGGGCTGGGGCAAGTACTTGCCATGCCCAGGCCAGGGTGTTCCAGGCTGGGGAAGCAGAGGCCCAGCTCCAGGCCCTGCTGGTGGAGGTGCGGTTCCTGGCCGAGGGTCTCCGTGAGCAGGACCGCAGGGTGAGCGTGGCGGAGAAGTGGCAGTTTGCAGCAGTGGTCATTGACCGTCTGTGTCTGGTGGGGTTCAGTGTGTTCAACATAATTTGTACCATTGCAATCCTCATGGCCGCACCCAACTTTGCAGAGGCCGCCTCCAAGGACTTCTTCTGAGAAGGAGCCCCGCTGCTTCTAAATTGTTGCCACCactcaaaaaaacaacaacaacatatatcCATATTTCTGCCAAGATGTGCTTTTAAGATCAGATTGACAAGTTATAACGCATATTTATTGCATTTGATGCATTCAGAGACTTTGGGGATTTTCATTTGGGGTAAATGGAGATTGGCAAACCCATGCTTAAGCTTATTTAAAGCTGctatgctgcatcagttgggCTACAGGTTATAATTATTTTAAAGAGACATTTTGTAGAATGTCCTTTTAAAAAGTCACCAGAAGTGACCATTTAACAGtcctaaaaaatatatttaacaaaCATCCCGGGGGAGCATGCCcccggacccccccccccc
>XM_036967794.1
caccaatccaacctccctttttctccctctaTCTTCCTGTGAACTCAGCTGGTTTTTCTTCTTGCCTCTCTGCCTCACTACCCTTCTTctcttccttgtctctctctctcttctctctgtctgttgctgcCTGCCCTGCTCCTGACAtgtcctgcctccctccctctctattccactctaccctgcctctctctctctccgtctctgttgttccccatctctttctctgctctctatGTTCAGTAGTGCAACATGAGGCAGTCTGTGGCTATCTGTCTGCTTGGACTCTCAGCTCTGCTCCACGtaTCTGAGCAGGGTCCCCACCAGCGTAATCTATTGAGGGAGCTACTGAGGGACTATAACCGTATGGAGAGACCTGTTGCCAACGACTCTCTACCACTCACTGTCCGATTCTCCTACACTCTCTTACAAGTCATGAATGTGGATGAGAAAAACCAGATTCTCACCACTAATGCCTGGCTTCAGATGCAATGGTTTGACCACTACCTTCAGTGGAACCAGTCAGAGTACCCTGGAGTGAAAACCCTTCGCTTCACTACTGACCAGGTCTGGATACCTGATATACTACTGTACAACAgTGCCCATGATAAATTTGATGCCACCTTTAAGAGCTATGTGCTGGTCAACTCCAGTGGATTCTGTGAGTACCTACCTCCAGGTATTTTCAGCAGTGCGTGTGAAGTGGACGTGCGTTGGTTTCCCTTTGACGTCCAGCACTGTGAGCTGAAGTTTGGCTCGTGGACGTTTGACGGCTGGCTGCTGGACCTCCAGATGCAGGAGGCTGACCTGTCAGGATACATGTCCAATGGAGAGTGGGAACTGCTGGGTGTACCAGGTGATCGTCATGAGATATTTTATGAGTGCTGTACAGAGCCCTACTCTGATGTGACCTTTGTTGTGACCCTACGACGGAGAACTCTATTCTACGCTCTCAACCTCCTCGTCCCCTGTGTTCTCATCTCCTCCTTGACACTGTTGGTATTTCTACTGCCAgcccaatcgggggagaagatcggtctgggCATTACAATTCTTCTCTCTCAGACTTTCTTCATGTTGCTTGTGGCTGAGATTATGCCAGCTACCTCAGACTGCATACCACTGATAgGTCAGTATTTTGTGAGTACCATGGTTACCGTAGGGATGTCAGTGGTGGCGACTGTAGTTGTACTTCAGTACCATCACCACGACCCCAACAGTGGAGACATGCCTCAATGGgttGAGTTGGTTCTACTCCAGTGGGTTCCATGGTTTCTGAGGATGAAGTGTCCAGAAGAGTGGGGTGAGCTCACACCCCAGCACAGCCCCTCCAACCCCCAGACCAAGACCTGCTCCTctgcccctcccaccaccaccaccccagcccCCTTAACCTTCCCCCAGAGCCTCACCTCTCTGCAGGCCAGTCTAAGCCAGCTCAGCCAGCCCCTACCACACCCACCTTCCAACCCTACCCTCCAGTCCTATCCCAACTATAATCCAAACCCCCAGCCTAATATCCACCTTAACCCAAATCGATATCCCCAGCCCCTTCTTAACCTACACCCCAATCTCCCCTCCATCCCCCACGCTCAGCCGAATGGACACCTGCCATACATGGGCTTCCAGAGTCCTCCTGAACCTGACCCTGCTGtcacctggagaggaggaagaggaggaggagaagaaagaagggGTTCTGACACCCgcatcctccaccaccacccaccctccTCCACAATGTTGGGAAGCCCCCGTTCACAACCCCCCACATCTCCAGACCCTGACCCCTCATCCTCAGGTTCCAGCTGTGTGGAGGATGGGGCTGGGGCAAGTACTTGCCATGCCCAGGCCAGGGTGTTCCAGGCTGGGGAAGCAGAGGCCCAGCTCCAGGCCCTGCTGGTGGAGGTGCGGTTCCTGGCCGAGGGTCTCCGTGAGCAGGACCGCAGGGTGAGCGTGGCGGAGAAGTGGCAGTTTGCAGCAGTGGTCATTGACCGTCTGTGTCTGGTGGGGTTCAGTGTGTTCAACATAATTTGTACCATTGCAATCCTCATGGCCGCACCCAACTTTGCAGAGGCCGCCTCCAAGGACTTCTTCTGAGAAGGAGCCCCGCTGCTTCTAAATTGTTGCCACCactcaaaaaaacaacaacaacatatatcCATATTTCTGCCAAGATGTGCTTTTAAGATCAGATTGACAAGTTATAACGCATATTTATTGCATTTGATGCATTCAGAGACTTTGGGGATTTTCATTTGGGGTAAATGGAGATTGGCAAACCCATGCTTAAGCTTATTTAAAGCTGctatgctgcatcagttgggCTACAGGTTATAATTATTTTAAAGAGACATTTTGTAGAATGTCCTTTTAAAAAGTCACCAGAAGTGACCATTTAACAGtcctaaaaaatatatttaacaaaCATCCCGGGGGAGCATGCCcccggacccccccccccc

Function


NR:

description
neuronal acetylcholine receptor subunit alpha-7-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036967789.1 False 2285 mRNA 0.52 10 8466936 8494991
XM_036967794.1 True 2465 mRNA 0.52 10 8466936 8495390

Neighbor


gene id symbol gene type direction distance location
LOC110520794 LOC105024462 coding downstream 223193 8214332 ~ 8243743 (-)
si:dkey-246i14.3 LOC106570832 coding downstream 626461 7744358 ~ 7840475 (-)
LOC110520788 LOC106593005 coding downstream 849743 7577008 ~ 7617193 (-)
LOC110508498 NA coding downstream 891322 7573853 ~ 7575614 (-)
LOC110508494 LOC106575071 coding downstream 893417 7554786 ~ 7573519 (-)
LOC110520892 LOC106605923 coding upstream 203645 8699031 ~ 8703263 (-)
LOC118964373 NA coding upstream 206073 8701463 ~ 8701598 (-)
LOC118964372 NA coding upstream 206493 8701883 ~ 8702017 (-)
LOC110520835 ash1l coding upstream 309261 8804651 ~ 8839679 (-)
LOC110516769 LOC100136250 coding upstream 358425 8853815 ~ 8862231 (-)
G221855 NA non-coding downstream 2390 8461540 ~ 8464546 (-)
G221852 NA non-coding downstream 9455 8454161 ~ 8457481 (-)
G221835 NA non-coding downstream 40819 8425678 ~ 8426117 (-)
G221825 NA non-coding downstream 52906 8413662 ~ 8414030 (-)
G221806 NA non-coding downstream 56127 8394361 ~ 8410809 (-)
G221896 NA non-coding upstream 72282 8567672 ~ 8570629 (-)
G221922 NA non-coding upstream 113747 8609137 ~ 8611384 (-)
G221880 NA non-coding upstream 133293 8628683 ~ 8630117 (-)
G221952 NA non-coding upstream 186122 8681512 ~ 8682295 (-)
G221960 NA non-coding upstream 197984 8693374 ~ 8693897 (-)
G221788 LOC106574877 other downstream 116647 8345683 ~ 8350289 (-)
LOC110508472 LOC106573847 other downstream 936619 7528026 ~ 7530317 (-)
LOC110508454 s10ag other downstream 942444 7517195 ~ 7524544 (-)
G221807 adar other upstream 7794 8503184 ~ 8523208 (-)
G221986 NA other upstream 267729 8763119 ~ 8763884 (-)
G222023 LOC100136250 other upstream 358427 8853817 ~ 8949187 (-)
G222465 NA other upstream 597790 9093180 ~ 9095216 (-)

Expression



Co-expression Network