LOC110520892 (LOC106605923)


Basic Information

Item Value
gene id LOC110520892
gene name LOC106605923
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8699031 ~ 8703263 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967868.1
TCTGCATTTTCTAAGATGGCCACCCTCTGGTTTCTCTTTCAGCTCGCAAAGGACCTGTTGCACCCAACctcagaggaggagaagaggagtcaCAAGAAGAAGCGTCTTGTACAGAGCCCTAACTCGTATTTTATGGACGTCAAATGTCCAGGATGCTATAAGATCACGACAGTGTTCAGTCACGCCCAGACGGTCGTCCTGTGTGTCGGATGCTCCACAGTCCTGTGTCAACCTACAGGGGGTAAAGCACGCCTCACAGAAGGATGCTCATTCAGGAGGAAACAGCACTAGACTCTCAGCAATGGAGCTTGTTGGACCGAGAGACCCAAGGGAGGAGAGACGAGTGACCCCACAGTGACCCTGCTCAGGAAGTGACAACGCGAGAGAAAGTGGAGATGAAACTGAAGAGGAAAGATGGTGTTGAGCTCTGCTTTGTGTATGTAGAGAGAGAACGTCCCCTGGCATGACATCACTCCACCGGTCTCTCTCACTTAATAAAGTTTAGCTTTTTGTTAAAGAA
>XM_021598339.2
AACACTTCCGGCCCCCGCTCTTCGGCCCGTTCATTTATTAACTGTCAACTTCCGGTTGATCCTTCTTTTCGGCAACGGCTACAAACTCGCCAACATGCCACTCGCAAAGGACCTGTTGCACCCAACctcagaggaggagaagaggagtcaCAAGAAGAAGCGTCTTGTACAGAGCCCTAACTCGTATTTTATGGACGTCAAATGTCCAGGATGCTATAAGATCACGACAGTGTTCAGTCACGCCCAGACGGTCGTCCTGTGTGTCGGATGCTCCACAGTCCTGTGTCAACCTACAGGGGGTAAAGCACGCCTCACAGAAGGATGCTCATTCAGGAGGAAACAGCACTAGACTCTCAGCAATGGAGCTTGTTGGACCGAGAGACCCAAGGGAGGAGAGACGAGTGACCCCACAGTGACCCTGCTCAGGAAGTGACAACGCGAGAGAAAGTGGAGATGAAACTGAAGAGGAAAGATGGTGTTGAGCTCTGCTTTGTGTATGTAGAGAGAGAACGTCCCCTGGCATGACATCACTCCACCGGTCTCTCTCACTTAATAAAGTTTAGCTTTTTGTTAAAGAA
>TU253397
CTTCTTTTCGGCAACGGCTACAAACTCGCCAACATGCCACTCGCAAAGGACCTGTTGCACCCAACctcagaggaggagaagaggagtcaCAAGAAGAAGCGTCTTGTACAGAGCCCTAACTCGTATTTTATGGACGTCAAATGTCCAGGATGCTATAAGATCACGACAGTGTTCAGTCACGCCCAGACGGTCGTCCTGTGTGTCGGATGCTCCACAGTCCTGTGTCAACCTACAGGGGGTAAAGCACGCCTCACAGAAGGATGCTCATTCAGGAGGAAACAGCACTAGACTCTCAGCAATGGAGCTTGTTGGACCGAGAGACCCAAGGGAGGAGAGACGAGTGACCCCACAGTGACCCTGCTCAGGAAGTGACAACGCGAGAGAAAGTGGAGATGAAACTGAAGAGGAAAGATGGTGTTGAGCTCTGCTTTGTGTATGTAGAGAGAGAACGTCCCCTGGCATGACATCACTCCACCGGTCTCTCTCACTTAATAAAGTTTAGCTTTTTGTTAAAGAATCCA

Function

NR:

description
40S ribosomal protein S27-like

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967868.1 False 520 mRNA 0.50 3 8699035 8702619
XM_021598339.2 False 578 mRNA 0.51 4 8699035 8703263
TU253397 True 521 lncRNA 0.50 4 8699031 8703202

Neighbor

gene id symbol gene type direction distance location
LOC110520844 LOC106605887 coding downstream 203645 8466936 ~ 8495390 (-)
LOC110520794 LOC105024462 coding downstream 455292 8214332 ~ 8243743 (-)
si:dkey-246i14.3 LOC106570832 coding downstream 858560 7744358 ~ 7840475 (-)
LOC110520788 LOC106593005 coding downstream 1081842 7577008 ~ 7617193 (-)
LOC110508498 NA coding downstream 1123421 7573853 ~ 7575614 (-)
LOC110520835 ash1l coding upstream 101388 8804651 ~ 8839679 (-)
LOC110516769 LOC100136250 coding upstream 150552 8853815 ~ 8862231 (-)
LOC110520884 LOC100136250 coding upstream 175725 8878988 ~ 8887653 (-)
LOC110520883 LOC100136250 coding upstream 209176 8912439 ~ 8921058 (-)
LOC100136250 LOC100136250 coding upstream 235557 8938820 ~ 8949179 (-)
G221964 NA non-coding downstream 3070 8695411 ~ 8695965 (-)
G221963 NA non-coding downstream 3959 8694844 ~ 8695076 (-)
G221962 LOC106605922 non-coding downstream 4233 8694567 ~ 8694802 (-)
G221961 NA non-coding downstream 4661 8693991 ~ 8694374 (-)
G221960 NA non-coding downstream 5138 8693374 ~ 8693897 (-)
G221967 NA non-coding upstream 1738 8705001 ~ 8705540 (-)
G221975 NA non-coding upstream 15577 8718840 ~ 8722818 (-)
G221987 NA non-coding upstream 60723 8763986 ~ 8767476 (-)
G221988 NA non-coding upstream 67301 8770564 ~ 8771933 (-)
G222007 NA non-coding upstream 98688 8801951 ~ 8803019 (-)
G221807 adar other downstream 175827 8503184 ~ 8523208 (-)
G221806 NA other downstream 288226 8394361 ~ 8410809 (-)
G221788 LOC106574877 other downstream 348746 8345683 ~ 8350289 (-)
LOC110508494 LOC106575071 other downstream 1125563 7554786 ~ 7573519 (-)
LOC110508472 LOC106573847 other downstream 1168718 7528026 ~ 7530317 (-)
G221986 NA other upstream 59856 8763119 ~ 8763884 (-)
G222023 LOC100136250 other upstream 150554 8853817 ~ 8949187 (-)
G222465 NA other upstream 389917 9093180 ~ 9095216 (-)
LOC110501040 LOC106605812 other upstream 407710 9101425 ~ 9118437 (-)

Expression


Co-expression Network