LOC110520796 (fam189b)


Basic Information

Item Value
gene id LOC110520796
gene name fam189b
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8715996 ~ 8766590 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967901.1
GCGGGCTTTGCCGCATCCTCCACGCGCGACTGGCGTGCCTTTTCGTCACATGACGAAGTGTCGGTTTACAAACACTAGGCATTCCTTTCTTTTGCCTCTATGGTGAAGGAAAGATAATGGAGGGGTGGGGTGATGGTGAACGGGAAAGAGAAGAATGATCATCAGCAAGGCTCTTAGACTTGGGAAACGGATGTGTGTGAAACTGGAACCGAtccttgaggtgtgtgtgtgacgtatAATTCGGTGCAGTGAGGTAGATGTCCGGGATATACACGAGCAGAACGGGAGGCCCGCGTGACTGCTgcagggaagagagaagaggacagagggggTGAGTTTGTGTGGTCCATCGCAAAACTCCCATGGAGGTAAAATATGGAAAGAGGAGGAATAGCAAATGAAAACAGCACAAACGTGCGGACGGCTCAAGGAGAATGGACTTTCTATAATTGATGTACGTTTACTTTCGACGGATTTAAGTAATTTCTTAAACTGAACGGTTTGCCGACCTAACCGATTAAGATCTGATCAAGAGCTATCTCTCTCATCCTTCGGATAGGTCCGGTAGTCGGACCTTCGTGAGGACAGGACAACTCGGGCCTTGTTTCGATGCTTGTTCCTCGTCACCTTGACAAGATCCAGACCCACTCACCGCCACACAATACATATGGTTTCTTATTACGGTAGAAACAACGGGATATCTGGTGCTTAATAACTGGTGCTGCTACAGGACTGCGGCCTCGGGGCTCCGCCCACCGCAATGCTTATGGGCCTTGGAAGGTAGAGATatggagacagaggaacagaacGGAGCTGTGTGTCGTAAATGCATTCATGTTCTCAAGGATTAGCCCTAGgtattttttcttatttttctcctCACGTGAACATGTTGAAGTTTGTCTGGGGTGCAGATGTAATAGGACATATACACTCTGCTAAGCAGCTATTGCTGTTTTCATATGCTAAATAGCCCAGTCTTCTGAGTTGAGAGTTTTTGGAAACTGCACTGTGGAACCTTGGGAATTGCACAACGGGCTTTGTCATCTGCCAATTGACAACCCAGGGCCAAAGTGAAAAGGGGGTGATTTTTTTCAAAGCAAcaaactctccatctctcttttacacacacacaccgcatataggcttacacacacgcacacatacacagactCACCActctccacacatacacacaccagccaTGCCATCCCCGTCAGACTCCAGCAGTGTAGTGTCAGCCTCTGGGTCTAGGGGCTGGTCAGATAGCTGCCGGGGCATGTCTGGCCGTCAGGGTGGGGCCAAACTGCTGCTGTACCTGGGGCTGTGCCACCTGGGCCTGGGGGCCATGGTCCTGGCCTTCTCCTTCACCAGCATGGCCTTCACATCCTCAGCCCGCGTCCGACAGTCCTGCCCCTTCTGGGCCGGCTTCTTTGTTGTGGCATCAGGGTTAGTTGGACTTATCTCATGGAGAAGACCACTCACTCTTGTGgTGTCCCTCTTCATGCtgctgtctgctgtgtgtgtcatCCTTAGTCTGGCTGGATCCATGCTCTCCTGTCAGAACGCACAGATGGTCAAGTCACTCCTTACCTGCCAGgTGGAgaatgggttgtgtgtgtgttgcgccCCAACACACTCCTGCTCTATAAACGAGGAGGAGACCCTGGTACTCTACCTAAACGCAGACTGCCACTCTGTCAGACATCagctcaagGACCTGTTGTTCAGTGCTTGTGGTCTGAGTATTCTCTCTACCATCATCTGTACTCTCTCTACTGTCACCTGTAGTATACACATCTTCTCCCTGGACCTAGTGCACCTGCTCGCCCCGCACCGCTCTCGCTCCGTCAACCCAGAATGCACCACTCCTCAGGATGCCTTCCTGACCAACATCATGGACTTTGAGGAGTTTGTCCCGCCCATCCCTCCGCCCCCCTACTACCCCCCTGAATACACCTGCAGCTCTGAGACAGACGCACAgagTATCACCTATAACGGGTCGATGGAGAGTCCAGTTCCTCTGTACCCCACTGACTGTCCCCCTCCTTACGAATTAGTGATGGGACAGAGAGCAGCTAGCCAGGCCACGGTGTTTGACAGCCATGGGAATGAGCTGTCTGGAGAGAGGGCCACGTCCACTGCCTTCAGCGGAGAGGtctccATGGACAGTGGTTCTCTGTTGATGTCGGAGATCATTGACATCCCAGACGACTCCTCACCTTCAGAGGACTCCTGCCTCGTGGGAGTGGGGGTGAGGgctaggggggagagagggagcaccgggggagtggagaggggagacgggggagaaggaggggagtaTGTGAGCTTCCGTGGCCCCCCTCCCCAACCCCCGGAGAGTCCCCTGGTAGAGAGTCCCCTGGTGGGCCCCAGGGCCAGGCGATGCTACAGAGGAGAGAGGTCCAACTCCTGCTCCTCATCTAGCACTGCTACAGCTACATACAGGTCTCCAGTGTTGAGGCGACAGGCTATGTTGGCCAGTAGTTGTTCCCAGTTGGAGCTGCTAGGGGgcaccacctctcaccagtgcTCCTCTATCCTAGAGAAACGAGTCGGACCTTGCACCCCTTTACGACGCGGTTCCACCTCAGCAGCTCCTCCCACTTCCTCATCCTCAGCTGTCAATCAGCAGGGTGGTCAGGGCAACAGGGTACCCCTCCCCCTACAGCCGTTGTACCTGCGTCGTCAGGGCGGAAGGAGCGAGAGGGGTGATAGTGACGGGCTTCTGCCCCTAGTGAGGTCACACAGCGAGCCTGGCCTCAGCTCTTCTGCTGATACagTATACTTCAGTGGTGGCTCAGTGGGCAGTAAAGGAGTGAGGGAGGGCTCTCAGACCTCTACAGACACAGGTCCGGCCTCCGAGGCATGCCTACTACCCCGCTCCTCTCTGGTGCCCCCCTCAGCCCTCCTCCCCAGGAAGGGCAGTGTGAAGGCAGCCACCATGGGGCGCACCTTGCCCCTCTCCAAAGGCCCTGCCAACTCTCCCTTGCACCTGCCCAAAGAATGCAACCGCTCTCTTGGGGACCTCAAGGTGACGAGGGGGTTGGTGGCTCGCTTCCTGCAGCGCTCCAAACGGAACCTGGCGTCCGCCGCAGAGCATTCTGGGAACACGGGACAGGGTCAGAAAAGGAGAGGCGGGGTGGAGGGCAACGGGACAGGCCATCTCCCTTTAGAGCAGgTGTTACGTAACTCCTGGGGGGCCAGCCAGGGAACCCACCCGCCATACCCTCATCACCGTGGTCACCACCACTCCCATAGCGACAGCCGCCACAACCGCCGTCATAGCAACCAACCCCCTGTGACGGAGGGGATCCACTTGCGCAGCTGCGGCGACTTAAGCTCCTCCTCCTCTGCGTCGCTATGGCGATTACTGACGGCCAACCCCCCTCACGGGTCATCAGGGACACTGTACACAGAGTCAGCCCTgtaagagggggaggagggaggaaagatgggaggggagggggaggaaaaggagaggaggcagaaagTGTACCCACACAGAGGAGAGTGGAGGCATGGTATGGTCTAATGAAGAAGAGATacaaagggaggaggagaggtggaggatggtAGGATGagttagacaggggagaggaaggatgaaGGAACAGGCTACTGACATATCCTGATGGGCGGTGGAGGGAGTCAGCATTATGAGGAGGGAACGACTGGACCTTTGCTACAGCCTTGTTCCAATACTTTCAACATGCATCCTTCCTCCTTCCCCTTGGATCCCTCCTCTGCACCTGCGCCTGGCCTTCCTTTCCTGAACTTTGACCTCTCAACTAACCTTCAACCTCCACCTAGCCATACTGAAAACAACTCTATCTGTCCTCTCCAACTCTCTAGGATCTCTCTCTAACTTCAAGagtagagaggatggagagaaggagtagGATAATGAAGTTTCCCCTAGACTCTGAGCTATGGTCAGTTTAGTGTTTCTCCtcgtaatggttaaggttaggatcagTGGAGcataagctgatcctagatctgtgtctaaGGTAAACACTTTTCTGGAGCTGTGAACATCACTCTTACACGAACCGCATACACTCATTAAACTGCTCACTCTTTTTCAAAACTCAAATGTACGTTCATTTGTCCAGCTCTTCATCCGGAGCGAAATTCACTAAGTGTTCACGGAACTCACCTTTTTGTCTTCATCTGAAATGGTTAACCTTCCTTTTCTCCTGATGACACTGTAAAATGTACAGAAAAATGTACACTCGTTTTGCCCACTGACAGTGAAAGTTTAATGGCCTGCTAGTTTCGCCGTATGTTTACAAACTTACATCGTTATTATtttagtcttttttttttgtggttcATTTTCTTGAGGTAAAATCAAGATGTAATCATCAACAGCCCTTACCTAGTCCATCTCCAATCTGCCTTCAGAAGAAAGGTGCCTCAAACTCAAAGctaacacaccatctaccccaaactcaaaactcacacaccatctgccccaaactcaaaactcacacaccatctgcCCCAAACTCAAAGCTAACACACCAtcaaccccaaactcaaaactcacacaccatctaccccaaactcaaaactcacacaccatctaccccaaactcaaagctaacacaccatcaaccccaaactcacacaccatctgcCCCAAACTCAAAGCTAACACACCATCAACCccaaactcacacaccatctaccccaaactcaaagctaacacaccatcaaccccaaactcaaaactcacacaccatctaccccaaactcaaaactcacacaccatctaccccaaactcaaaactcac
>TU252791
gaggggagtaTGTGAGCTTCCGTGGCCCCCCTCCCCAACCCCCGGAGAGTCCCCTGGTAGAGAGTCCCCTGGTGGGCCCCAGGGCCAGGCGATGCTACAGAGGAGAGAGGTCCAACTCCTGCTCCTCATCTAGCACTGCTACAGCTACATACAGGTCTCCAGTGTTGAGGCGACAGGCTATGTTGGCCAGTAGTTGTTCCCAGTTGGAGCTGCTAGGGGgcaccacctctcaccagtgcTCCTCTATCCTAGAGAAACGAGTCGGACCTTGCACCCCTTTACGACGCGGTTCCACCTCAGCAGCTCCTCCCACTTCCTCATCCTCAGCTGTCAATCAGCAGGGTGGTCAGGGCAACAGGGTACCCCTCCCCCTACAGCCGTTGTACCTGCGTCGTCAGGGCGGAAGGAGCGAGAGGGGTGATAGTGACGGGCTTCTGCCCCTAGTGAGGTCACACAGCGAGCCTGGCCTCAGCTCTTCTGCTGATACagctccttctcttctctcccctccctctctcctttctcccctcactctctcctctctccctccctctctgctctctccctccctctctgctctagTATACTTCAGTGGTGGCTCAGTGGGCAGTAAAGGAGTGAGGGAGGGCTCTCAGACCTCTACAGACACAGGTCCGGCCTCCGAGGCATGCCTACTACCCCGCTCCTCTCTGGTGCCCCCCTCAGCCCTCCTCCCCAGGAAGGGCAGTGTGAAGGCAGCCACCATGGGGCGCACCTTGCCCCTCTCCAAAGGCCCTGCCAACTCTCCCTTGCACCTGCCCAAAGAATGCAACCGCTCTCTTGGGGACCTCAAGGTGACGAGGGGGTTGGTGGCTCGCTTCCTGCAGCGCTCCAAACGGAACCTGGCGTCCGCCGCAGAGCATTCTGGGAACACGGGACAGGGTCAGAAAAGGAGAGGCGGGGTGGAGGGCAACGGGACAGGCCATCTCCCTTTAGAGCAGgTGTTACGTAACTCCTGGGGGGCCAGCCAGGGAACCCACCCGCCATACCCTCATCACCGTGGTCACCACCACTCCCATAGCGACAGCCGCCACAACCGCCGTCATAGCAACCAACCCCCTGTGACGGAGGGGATCCACTTGCGCAGCTGCGGCGACTTAAGCTCCTCCTCCTCTGCGTCGCTATGGCGATTACTGACGGCCAACCCCCCTCACGGGTCATCAGGGACACTGTACACAG
>TU252786
CTCCACCTAGCCATACTGAAAACAACTCTATCTGTCCTCTCCAACTCTCTAGGATCTCTCTCTAACTTCAAGagtagagaggatggagagaaggagtagGATAATGAAGTTTCCCCTAGACTCTGAGCTATGGTCAGTTTAGTGTTTCTCCtcgtaatggttaaggttaggatcagTGGAGcataagctgatcctagatctgtgtctaaGGTAAACACTTTTCTGGAGCTGTGAACATCACTCTTACACGAACCGCATACACTCATTAAACTGCTCACTCTTTTTCAAAACTCAAATGTACGTTCATTTGTCCAGCTCTTCATCCGGAGCGAAATTCACTAAGTGTTCACGGAACTCACCTTTTTGTCTTCATCTGAAATGGTTAACCTTCCTTTTCTCCTGATGACACTGTAAAATGTACAGAAAAATGTACACTCGTTTTGCCCACTGACAGTGAAAGTTTAATGGCCTGCTAGTTTCGCCGTATGTTTACAAACTTACATCGTTATTATtttagtcttttttttttgtggttcATTTTCTTGAGGTAAAATCAAGATGTAATCATCAACAGCCCTTACCTAGTCCATCTCCAATCTGCCTTCAGAAGAAAGGTGCCTCAAACTCAAAGctaacacaccatctaccccaaactcaaaactcacacaccatctgccccaaactcaaaactcacacaccatctaccccaaactcaaaactcacacaccatctgccccaaactcaaaactcacacaccatctaccccaaactcaaaactcacacaccatcaaccccaaactcaaaactcacacaccatctgccccaaactcaaaactcacacaccatctaccccaaactcaaaactcacacaccatctaccccaaactcaaaactcacacaccatctaccccaaactcaaaactcacacaccatcaaccccaaactcaaaactcacacaccatctaccccaaactcaaaactcacacaccatctaccccaaactcaaaacgcacacaccatctaccccaaactcaaaactgaCTCTTATTACACCGGTCTAAGACATCATACTCCTAAACTCGGCATTTCCTGTCTCTGAGATGACCTTGGACATAGCGATTTGATTTGTATGTTATGGTACAACCCCCCATAATGTACTCCAAATGAAACAGGAGCCTTGTTGAAATACTACAACTTCCCTCCCTGTGGATCAAATCCTACAAAATAACCAACCTTCCCCTAAGAATGACTTTAGCTGCATGTTTTGGCAATGCTTCTTacttttctccctttctctctctctctcttgcacccAAAACCTAGTT

Function

symbol description
fam189b Enables WW domain binding activity. Predicted to be integral component of membrane.

NR:

description
PREDICTED: sporozoite surface protein 2-like isoform X14

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967901.1 False 4823 mRNA 0.53 14 8715996 8764972
TU252791 False 1218 TUCP 0.62 6 8761334 8763589
TU252786 True 1325 lncRNA 0.42 2 8763974 8766590

Neighbor

gene id symbol gene type direction distance location
LOC110520870 rab13 coding upstream 1561 8703710 ~ 8714435 (+)
LOC110520846 LOC106605923 coding upstream 16836 8686537 ~ 8703190 (+)
LOC110520797 LOC106605883 coding upstream 31213 8680513 ~ 8684783 (+)
LOC110520861 LOC106605898 coding upstream 58313 8639044 ~ 8657683 (+)
LOC110520869 LOC106605894 coding upstream 78630 8631406 ~ 8637366 (+)
LOC110520852 LOC106605924 coding downstream 2805 8767777 ~ 8771883 (+)
LOC110520836 LOC106605888 coding downstream 7364 8772336 ~ 8800464 (+)
LOC110520850 LOC106605893 coding downstream 75218 8840190 ~ 8853689 (+)
LOC110516768 LOC106605893 coding downstream 100792 8865764 ~ 8878653 (+)
LOC118945318 LOC106575331 coding downstream 133049 8898021 ~ 8926057 (+)
G221499 NA non-coding upstream 37198 8678496 ~ 8678798 (+)
G221441 NA non-coding upstream 46481 8573930 ~ 8669515 (+)
G221469 NA non-coding downstream 35538 8800510 ~ 8801779 (+)
G221545 NA non-coding downstream 57158 8822130 ~ 8825071 (+)
G221544 ash1l non-coding downstream 58152 8823124 ~ 8823805 (+)
G221546 NA non-coding downstream 61078 8826050 ~ 8826757 (+)
G221526 LOC106591640 non-coding downstream 75252 8840224 ~ 8908728 (+)
G221299 s10i other upstream 226929 8399071 ~ 8489067 (+)
LOC110520790 LOC106606111 other upstream 543773 8170634 ~ 8178058 (+)
LOC118945274 LOC106575512 other upstream 1268119 7437011 ~ 7447882 (+)
G220445 LOC106575489 other upstream 1334433 7378258 ~ 7381563 (+)
G220435 NA other upstream 1350711 7359668 ~ 7365285 (+)
G221525 LOC106605893 other downstream 82864 8847836 ~ 8878616 (+)
G221539 NA other downstream 96528 8861500 ~ 8863976 (+)
G222089 NA other downstream 270386 9035358 ~ 9035833 (+)
G221458 NA non-coding upstream 121353 8611202 ~ 8642621 (+)
G221415 NA non-coding upstream 133885 8628664 ~ 8630089 (+)
LOC110520796 fam189b other upstream 385 8715996 ~ 8766590 (+)
G221514 NA other upstream 31496 8728977 ~ 8732478 (+)

Expression


Co-expression Network