LOC110520850 (LOC106605893)


Basic Information

Item Value
gene id LOC110520850
gene name LOC106605893
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8840190 ~ 8853689 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967950.1
TTGAGCTCTCTACGTAACATCCTTCGTCTACAAACCAAAATGGCGACTACCACGGATTTAGCACCGTGACAGTTCGACCGAAATTGTGCAACTCTTCTGTGTTTTCAAAATAGACCTGAACCGTCTAAAACTACATGACCTTGCCTGTTTGGATTTTCATTTGGAATTTAATGAATTAATTGACCATGGCCCTTCACAGACTATCCTTGAGATTACGACAAACGGTAGCGCAGGTGCGACCGCTCCATGGCAGTGGGTGTGGCCAGCAGCAGGAGGCGGTTGGCATGGAGATGAGACCGGAGACATTCTCCATCTTCAGAACACAGGAGAACGACCCGgACTGTCAGTCAGAACAGCACCAGGGGCAGTACTACACTGTGCCCCCCTCCCACTTCCACACTGTCTTCCCCCATGGCCTGCCTCCACGATACCAAcaacagGTGAAGACGTTTAACGAGGGCTGTGTGATGGTGAGGCAGCCTGCTCTGGAGCTGATATCTCACCTGAAGAGAGCTGACTACAGCAAGCCCACCCTGCGCTACCTACTCTATGGGGTGAAGGGCAGTGGGAAGACCATGTCTCTCTGTCATACTGTCCACTACTGCTCCACACAGGGATGGCTAGTACTACACATACCAGATgCCCACCTGTGGGTGAAGAACTGTAAGGAGCTGTTGCCCTCCTCCTACCACGCCTCCCGCTTTGACCAGCCAATACAGGCCTCCAACTGGCTACGCAACTTCAGAACCACCAATGAAAACTTCCTCTCCAAGATCAAGTTGAGGCAGCGGTACGTGTGGACTaagagagagagcactgaggAGGGACAGCCACTAGGGGAGCTGGTGGACATGGGAGTGTCTCGTGTGAAGAGCAGCAGTGATGTGGTGGGGGCAGTTCTAAAGGAGCTGAGGCTACAGGCTGGGGGGACAGAGGGGGGCTTCAGGCTGGCTGTGGCTGTTGATGGAGTCAACGGTCTCTGGGGAAGGACCACGCTCAAGAAGGAGGACAAGAGCCCTgtGGCTCCAGAGGAGTTGACGTTGGTTCATAACTTGAGGAAGATGATCAACAATGACTGGtgtggAGGGGCGGTCATCGCCACGCTGTCTCAGACAGGATCTCTCTACGCTCCAAGCTCTGCCTACCTGCCCCAGGAGCTGCTGGGAGAGGAGGGCTTTGACAGCATGGACCCATTTATCCCAGTACCAGTCTCCCTCTACAGTGAGAAGGAGTTTGAGAGCTGTTACCTCTACTACCTGGACCGCCACTGGCTACAACACCCACACAGTCagacagaggaagggaagaaaGAACTGATCTTCCTCAGCAACAGAAACCCTTCTGTACTGGAGAGACTGTGTGCCTTCCTGTAACATCACACATGGGCCCACACCCTCCCACTCACCCATAGAGATAGGACTCATCTTTatatctgtgacagcatgggcagtgccattgaggctataacccataggaatccccactcAGTTGACTACTTTGACCACTTTAAAATGGCGGAAGCCCTCGATGGTGCTGCCCATGCGACATCAAGGCCACTAGAATTCTCTATGGGACAAACGCCAACAGATTCCATAGGAATCCCCACTCAGTTGACTACTTTGACCACTTTAAAATGGATTTTTTACATGGATTATAACGTTGCAGTTGTGTATGTGTCCCTCCATAAATGATTCTGTTGTGATGCATGATAGTGTCTTTCATAATAAAAATATACATGAAAAACA
>XM_036967946.1
ATCCTTCGTCTACAAACCAAAATGGCGACTACCACGGATTTAGCACCGTGACAGTTCGACCGAAATTGTGCAACTCTTCTGTGTTTTCAAAATAGACCTGAACCGTCTAAAACTACATGACCTTGCCTGTTTGGATTTTCATTTGGAATTTAATGAATTAATTGTGAAGGTCGCCCCTGCAATAGTACAGATGGCACCAGTGTAACTGTGTAAACTGACCTGGGTTTATGTACTTATTCATGTTCCAGACCATGGCCCTTCACAGACTATCCTTGAGATTACGACAAACGGTAGCGCAGGTGCGACCGCTCCATGGCAGTGGGTGTGGCCAGCAGCAGGAGGCGGTTGGCATGGAGATGAGACCGGAGACATTCTCCATCTTCAGAACACAGGAGAACGACCCGgACTGTCAGTCAGAACAGCACCAGGGGCAGTACTACACTGTGCCCCCCTCCCACTTCCACACTGTCTTCCCCCATGGCCTGCCTCCACGATACCAAcaacagGTGAAGACGTTTAACGAGGGCTGTGTGATGGTGAGGCAGCCTGCTCTGGAGCTGATATCTCACCTGAAGAGAGCTGACTACAGCAAGCCCACCCTGCGCTACCTACTCTATGGGGTGAAGGGCAGTGGGAAGACCATGTCTCTCTGTCATACTGTCCACTACTGCTCCACACAGGGATGGCTAGTACTACACATACCAGATgCCCACCTGTGGGTGAAGAACTGTAAGGAGCTGTTGCCCTCCTCCTACCACGCCTCCCGCTTTGACCAGCCAATACAGGCCTCCAACTGGCTACGCAACTTCAGAACCACCAATGAAAACTTCCTCTCCAAGATCAAGTTGAGGCAGCGGTACGTGTGGACTaagagagagagcactgaggAGGGACAGCCACTAGGGGAGCTGGTGGACATGGGAGTGTCTCGTGTGAAGAGCAGCAGTGATGTGGTGGGGGCAGTTCTAAAGGAGCTGAGGCTACAGGCTGGGGGGACAGAGGGGGGCTTCAGGCTGGCTGTGGCTGTTGATGGAGTCAACGGTCTCTGGGGAAGGACCACGCTCAAGAAGGAGGACAAGAGCCCTgtGGCTCCAGAGGAGTTGACGTTGGTTCATAACTTGAGGAAGATGATCAACAATGACTGGtgtggAGGGGCGGTCATCGCCACGCTGTCTCAGACAGGATCTCTCTACGCTCCAAGCTCTGCCTACCTGCCCCAGGAGCTGCTGGGAGAGGAGGGCTTTGACAGCATGGACCCATTTATCCCAGTACCAGTCTCCCTCTACAGTGAGAAGGAGTTTGAGAGCTGTTACCTCTACTACCTGGACCGCCACTGGCTACAACACCCACACAGTCagacagaggaagggaagaaaGAACTGATCTTCCTCAGCAACAGAAACCCTTCTGTACTGGAGAGACTGTGTGCCTTCCTGTAACATCACACATGGGCCCACACCCTCCCACTCACCCATAGAGATAGGACTCATCTTTatatctgtgacagcatgggcagtgccattgaggctataacccataggaatccccactcAGTTGACTACTTTGACCACTTTAAAATGGCGGAAGCCCTCGATGGTGCTGCCCATGCGACATCAAGGCCACTAGAATTCTCTATGGGACAAACGCCAACAGATTCCATAGGAATCCCCACTCAGTTGACTACTTTGACCACTTTAAAATGGATTTTTTACATGGATTATAACGTTGCAGTTGTGTATGTGTCCCTCCATAAATGATTCTGTTGTGATGCATGATAGTGTCTTTCATAATAAAAATATACATGAAAAACA
>XM_036967955.1
gaaggcagaacacaggatacgcttcgggaaagtcatattcttggtcgtactgatgGTAGCGCAGGTGCGACCGCTCCATGGCAGTGGGTGTGGCCAGCAGCAGGAGGCGGTTGGCATGGAGATGAGACCGGAGACATTCTCCATCTTCAGAACACAGGAGAACGACCCGgACTGTCAGTCAGAACAGCACCAGGGGCAGTACTACACTGTGCCCCCCTCCCACTTCCACACTGTCTTCCCCCATGGCCTGCCTCCACGATACCAAcaacagGTGAAGACGTTTAACGAGGGCTGTGTGATGGTGAGGCAGCCTGCTCTGGAGCTGATATCTCACCTGAAGAGAGCTGACTACAGCAAGCCCACCCTGCGCTACCTACTCTATGGGGTGAAGGGCAGTGGGAAGACCATGTCTCTCTGTCATACTGTCCACTACTGCTCCACACAGGGATGGCTAGTACTACACATACCAGATgCCCACCTGTGGGTGAAGAACTGTAAGGAGCTGTTGCCCTCCTCCTACCACGCCTCCCGCTTTGACCAGCCAATACAGGCCTCCAACTGGCTACGCAACTTCAGAACCACCAATGAAAACTTCCTCTCCAAGATCAAGTTGAGGCAGCGGTACGTGTGGACTaagagagagagcactgaggAGGGACAGCCACTAGGGGAGCTGGTGGACATGGGAGTGTCTCGTGTGAAGAGCAGCAGTGATGTGGTGGGGGCAGTTCTAAAGGAGCTGAGGCTACAGGCTGGGGGGACAGAGGGGGGCTTCAGGCTGGCTGTGGCTGTTGATGGAGTCAACGGTCTCTGGGGAAGGACCACGCTCAAGAAGGAGGACAAGAGCCCTgtGGCTCCAGAGGAGTTGACGTTGGTTCATAACTTGAGGAAGATGATCAACAATGACTGGtgtggAGGGGCGGTCATCGCCACGCTGTCTCAGACAGGATCTCTCTACGCTCCAAGCTCTGCCTACCTGCCCCAGGAGCTGCTGGGAGAGGAGGGCTTTGACAGCATGGACCCATTTATCCCAGTACCAGTCTCCCTCTACAGTGAGAAGGAGTTTGAGAGCTGTTACCTCTACTACCTGGACCGCCACTGGCTACAACACCCACACAGTCagacagaggaagggaagaaaGAACTGATCTTCCTCAGCAACAGAAACCCTTCTGTACTGGAGAGACTGTGTGCCTTCCTGTAACATCACACATGGGCCCACACCCTCCCACTCACCCATAGAGATAGGACTCATCTTTatatctgtgacagcatgggcagtgccattgaggctataacccataggaatccccactcAGTTGACTACTTTGACCACTTTAAAATGGCGGAAGCCCTCGATGGTGCTGCCCATGCGACATCAAGGCCACTAGAATTCTCTATGGGACAAACGCCAACAGATTCCATAGGAATCCCCACTCAGTTGACTACTTTGACCACTTTAAAATGGATTTTTTACATGGATTATAACGTTGCAGTTGTGTATGTGTCCCTCCATAAATGATTCTGTTGTGATGCATGATAGTGTCTTTCATAATAAAAATATACATGAAAAACA

Function

NR:

description
28S ribosomal protein S29, mitochondrial-like isoform X1

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0001666 response to hypoxia biological_process
GO:0005761 mitochondrial ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component

KEGG:

id description
K17408 DAP3, MRPS29; small subunit ribosomal protein S29

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967950.1 False 1745 mRNA 0.51 13 8840190 8853689
XM_036967946.1 False 1811 mRNA 0.51 13 8840208 8853689
XM_036967955.1 True 1576 mRNA 0.53 12 8846316 8853689

Neighbor

gene id symbol gene type direction distance location
LOC110520836 LOC106605888 coding upstream 39726 8772336 ~ 8800464 (+)
LOC110520852 LOC106605924 coding upstream 68307 8767777 ~ 8771883 (+)
LOC110520796 fam189b coding upstream 75218 8715996 ~ 8766590 (+)
LOC110520870 rab13 coding upstream 125755 8703710 ~ 8714435 (+)
LOC110520846 LOC106605923 coding upstream 141030 8686537 ~ 8703190 (+)
LOC110516768 LOC106605893 coding downstream 12075 8865764 ~ 8878653 (+)
LOC118945318 LOC106575331 coding downstream 44332 8898021 ~ 8926057 (+)
LOC110520801 LOC106605893 coding downstream 52877 8906566 ~ 8912310 (+)
LOC110517169 LOC106605893 coding downstream 79082 8932771 ~ 8938698 (+)
LOC110520813 LOC106605815 coding downstream 128905 8982594 ~ 8987846 (+)
G221546 NA non-coding upstream 13433 8826050 ~ 8826757 (+)
G221545 NA non-coding upstream 15119 8822130 ~ 8825071 (+)
G221544 ash1l non-coding upstream 16385 8823124 ~ 8823805 (+)
G221469 NA non-coding upstream 38411 8800510 ~ 8801779 (+)
G221561 NA non-coding downstream 8649 8862338 ~ 8863661 (+)
G221525 LOC106605893 non-coding downstream 24145 8847836 ~ 8878616 (+)
G221567 NA non-coding downstream 32638 8886327 ~ 8919260 (+)
G221514 NA other upstream 107712 8728977 ~ 8732478 (+)
G221299 s10i other upstream 351123 8399071 ~ 8489067 (+)
LOC110520790 LOC106606111 other upstream 667967 8170634 ~ 8178058 (+)
G221539 NA other downstream 7811 8861500 ~ 8863976 (+)
G222089 NA other downstream 181669 9035358 ~ 9035833 (+)
G222102 NA other downstream 213457 9067146 ~ 9068151 (+)
G222287 NA other downstream 591358 9445047 ~ 9445704 (+)
LOC110520820 LOC107573682 other downstream 648915 9490333 ~ 9508263 (+)

Expression


Co-expression Network