LOC110516769 (LOC100136250)


Basic Information

Item Value
gene id LOC110516769
gene name LOC100136250
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8853815 ~ 8862231 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967999.1
GGATATAAGGCCAGAGCTGCTTCATCACCGCACAACTGCAACCTGCAATTCACCTCTTCAATCTACTGCTCCTAAATACTTAATCATGAGTAAGAACTACATGAGCACCGAGAGGATTCTGCTGAAAGAGGACTACCTCCTCTCCAACAATGGACAATTTAAAGCTATCTTTCAGACCGATGGCAACTTTGTGCTCTATGGTTGGGGTCGGGTTGTCTGGGCATCAAACACTGTGAACAAAGATGCTCAGAGGCTCATCCTCCAAAAGGATGGAAACCTGGTCATCTACACCAAACAGGACCATCCCATTTGGTCAAGTAACACCGCCCGTTGCAACAATACACAGAGAGGCCACCTCACCCTCACTGACAAAGGTACCCTGGAGCTCTATAGAGACCGAGAGGTGATCTGGACATCGTAACATCGACCAGCCCAACAATGCACAAAGAGGTCACCTCACCCTCCTTGACGAAGGTGCCCTGATGCTCTACAGTCACAGAAATGTGGTCTGGTGCTCTCGTGAGGACACTAGTAATGAGGCAGAGTAACAGCTTCACTTGACCATACCTGTCTACATCTACCACTAAACTGTATTCAAAAGCCTAAAGGCTTTTTAACTCTTTGATTTGGTCAAATAAAACTGTATTGACTTAAAGTA
>XM_036967991.1
CACTGTTGTCGTGCTGTGAGGGGATATAAGGCCAGAGCTGCTTCATCACCGCACAACTGCAACCTGCAATTCACCTCTTCAATCTACTGCTCCTAAATACTTGTAAGTTCATTTAAGAATTTGAGAATCATGAGTAAGAACTACATGAGCACCGAGAGGATTCTGCTGAAAGAGGACTACCTCCTCTCCAACAATGGACAATTTAAAGCTATCTTTCAGACCGATGGCAACTTTGTGCTCTATGGTTGGGGTCGGGTTGTCTGGGCATCAAACACTGTGAACAAAGATGCTCAGAGGCTCATCCTCCAAAAGGATGGAAACCTGGTCATCTACACCAAACAGGACCATCCCATTTGGTCAAGTAACACCGCCCGTTGCAACAATACACAGAGAGGCCACCTCACCCTCACTGACAAAGGTACCCTGGAGCTCTATAGAGACCGAGAGGTGATCTGGACATCGTAACATCGACCAGCCCAACAATGCACAAAGAGGTCACCTCACCCTCCTTGACGAAGGTGCCCTGATGCTCTACAGTCACAGAAATGTGGTCTGGTGCTCTCGTGAGGACACTAGTAATGAGGCAGAGTAACAGCTTCACTTGACCATACCTGTCTACATCTACCACTAAACTGTATTCAAAAGCCTAAAGGCTTTTTAACTCTTTGATTTGGTCAAATAAAACTGTATTGACTTAAAGTA

Function

NR:

description
mannose-specific lectin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967999.1 False 658 mRNA 0.46 3 8853815 8861170
XM_036967991.1 True 702 mRNA 0.46 4 8853815 8862231

Neighbor

gene id symbol gene type direction distance location
LOC110520835 ash1l coding downstream 14136 8804651 ~ 8839679 (-)
LOC110520892 LOC106605923 coding downstream 150552 8699031 ~ 8703263 (-)
LOC118964372 NA coding downstream 151798 8701883 ~ 8702017 (-)
LOC118964373 NA coding downstream 152217 8701463 ~ 8701598 (-)
LOC110520844 LOC106605887 coding downstream 358425 8466936 ~ 8495390 (-)
LOC110520884 LOC100136250 coding upstream 16757 8878988 ~ 8887653 (-)
LOC110520883 LOC100136250 coding upstream 50208 8912439 ~ 8921058 (-)
LOC100136250 LOC100136250 coding upstream 76589 8938820 ~ 8949179 (-)
LOC110520856 LOC106591015 coding upstream 111725 8973956 ~ 8982283 (-)
LOC110520814 LOC106595728 coding upstream 125853 8988084 ~ 9050862 (-)
G222009 NA non-coding downstream 50149 8803105 ~ 8803666 (-)
G222007 NA non-coding downstream 50796 8801951 ~ 8803019 (-)
G221988 NA non-coding downstream 81882 8770564 ~ 8771933 (-)
G221987 NA non-coding downstream 86339 8763986 ~ 8767476 (-)
G221975 NA non-coding downstream 130997 8718840 ~ 8722818 (-)
G222059 NA non-coding upstream 91193 8953424 ~ 8953678 (-)
G222064 NA non-coding upstream 101521 8963752 ~ 8963983 (-)
G222066 NA non-coding upstream 109245 8971476 ~ 8972335 (-)
G222412 NA non-coding upstream 123413 8985644 ~ 8987837 (-)
G221986 NA other downstream 89931 8763119 ~ 8763884 (-)
G221807 adar other downstream 330607 8503184 ~ 8523208 (-)
G221806 NA other downstream 443006 8394361 ~ 8410809 (-)
G221788 LOC106574877 other downstream 503526 8345683 ~ 8350289 (-)
G222465 NA other upstream 230949 9093180 ~ 9095216 (-)
LOC110501040 LOC106605812 other upstream 248742 9101425 ~ 9118437 (-)
G222607 LOC106574954 other upstream 632565 9494796 ~ 9496853 (-)
LOC110508584 LOC104949237 other upstream 668943 9528874 ~ 9551643 (-)
LOC110520821 LOC106574299 other upstream 699514 9559133 ~ 9594654 (-)

Expression


Co-expression Network