LOC118945318 (LOC106575331)


Basic Information

Item Value
gene id LOC118945318
gene name LOC106575331
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8898021 ~ 8926057 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040472.1
ACCCCTGTCCAAAGAACAACTACTCAGCAGATATGACGATGTATTCAACAGGCCCGTTGAATCAGTGCCTGGGGAGGTACACTTTGAATTGGATGAGAGCATCAGTCCAGTGTGCTCCTCGCAATGTGCCCATTGCAATGTGAAGGCCCAGCTGGACAAGGCGCAGATGGCCACATGACATCTGTGACTAAACCAACTGACTGGATCAGCAATATGGTCATAGTGAAAAAAACAGAGAAGCTGAGGGTCTGCATCGACCCAAAGCATCTGAACCAAGCACTGAAACGATCCCACTACATCATGCCGACACTAGAGGATGTCCTCTATAAGCTTCCAAAGGCCAGGATTTTCACCTTGGTGGATGCCCGAGATGCATTCCTTCAATGCAAGCTGGACGAAGAAAGCAGCTTCATGACTACCTTCTGGACCCCTGGGGTGGGAAACGCTGGCTCAAGCTCCCGTTTGGTGTCTCAGTGGCGCCTGAGGTATACCAACGCAAGCAGCACGAGTTACTGGCTGGGCTCAAGGGCATTGAACCCATAGCCGGTGATGTCCTGATCGTAGGCTGTGGTGACACAGACGAAGAAGCAGAACGTATTCATGATGTGAAGCTCCTGGCACTGATGGAGCGCTGCCGATCAGTTAAGCTTGGCCTTGGCCAGAAGAAGCTGCAGTTCAAGGTGAAAGATGTCCACTTCCATGGTCGCATTCTCTCGGCCAAATGCCCGAAGCCGGACCTAGACAAAGACAGAGTGATCCTCGACAAGCCAAACCCGTCTGATGCAAAAGGAGTACAGCTTCTCATCGGCTTTGCAAACTATCTTGCAAAGTTCATGCCACACCTATCAACAGTCTGTGAGCCTCTGAGCCGGTTGCTGGACAAAGACAAgtatttcaagtattttttacttaagtactttacaccactgacaatGACTCACCATATTCCAGAAGCACAATCAACACCTCTAGTCAGGTGTTGAAAACTAGTATGAGCTATACACTATGGTGCAATGCATCAGATTATTGTTTattaaatgtgttaatgtgtttgtACCTGTCCCTATTCAAATAAACCAGAAAATACCACATTCACCATTATAAAGCAGTTAAGTTCTGCCACGGTTTGAGGAAAGAAAGATAGTTGGTGAAATCCCATGTCTAGAGAATCCTGTAGTAGTCTATCAGTTTTTCTGTGATGAAAATAAATCTGTTATTGAACGTT

Function

NR:

description
PREDICTED: uncharacterized protein LOC106575331

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040472.1 True 1225 mRNA 0.47 2 8898021 8926057

Neighbor

gene id symbol gene type direction distance location
LOC110516768 LOC106605893 coding upstream 19368 8865764 ~ 8878653 (+)
LOC110520850 LOC106605893 coding upstream 44332 8840190 ~ 8853689 (+)
LOC110520836 LOC106605888 coding upstream 97557 8772336 ~ 8800464 (+)
LOC110520852 LOC106605924 coding upstream 126138 8767777 ~ 8771883 (+)
LOC110520796 fam189b coding upstream 133049 8715996 ~ 8766590 (+)
LOC110517169 LOC106605893 coding downstream 6714 8932771 ~ 8938698 (+)
LOC110520813 LOC106605815 coding downstream 56537 8982594 ~ 8987846 (+)
LOC110520819 LOC106575022 coding downstream 537280 9463337 ~ 9483086 (+)
LOC118944441 NA coding downstream 559543 9485600 ~ 9486125 (+)
LOC110520820 LOC107573682 coding downstream 564276 9490333 ~ 9508263 (+)
G221525 LOC106605893 non-coding upstream 19405 8847836 ~ 8878616 (+)
G221561 NA non-coding upstream 34360 8862338 ~ 8863661 (+)
G221526 LOC106591640 non-coding upstream 50300 8840224 ~ 8908728 (+)
G221546 NA non-coding upstream 71264 8826050 ~ 8826757 (+)
G221579 NA non-coding downstream 27389 8953446 ~ 8953780 (+)
G221580 NA non-coding downstream 27742 8953799 ~ 8954033 (+)
G222062 NA non-coding downstream 29714 8955771 ~ 8956027 (+)
G222063 NA non-coding downstream 34721 8960778 ~ 8961075 (+)
G222065 NA non-coding downstream 44931 8970988 ~ 8971364 (+)
G221539 NA other upstream 34045 8861500 ~ 8863976 (+)
G221514 NA other upstream 165543 8728977 ~ 8732478 (+)
G222089 NA other downstream 109301 9035358 ~ 9035833 (+)
G222102 NA other downstream 141089 9067146 ~ 9068151 (+)
G222287 NA other downstream 518990 9445047 ~ 9445704 (+)
G222345 LOC106594812 other downstream 680248 9606305 ~ 9611139 (+)

Expression


Co-expression Network