LOC110520801 (LOC106605893)


Basic Information

Item Value
gene id LOC110520801
gene name LOC106605893
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8906566 ~ 8912310 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110520801
GTAGCGCAGGTGCGGCCGCTCCATGGCAGTGGGTGTGGCCAGCAGCAGGTGGCGGTTGGCATGGAGATGAGACCGGAGACATTCTCCATCTTCAGAACACAGGAGAACGACCCGgCCTGTCAGTCAGAACAGCACCTAGGGCAGTACTACACTGTGCCCCCCTCCCACTTCCACACTGTCTTCCCCCATGGCCTGCCTCCACGATACCAAcaacagGTGAAGATGTTTAACGAGGGCTGTGTGATGGTGAGGCAGCCAGCTCTGGAGCTGATATCTCACCTGAAGCGAGCTGACTACAGCAAGCCCAACCTGCGCTACCTACTCTATGGGGTGAAGGGCAGAGGGAAGACCATGTCTCTCTGTCAAACTGTCCACTACTGCTCCACACAAGGATGGCTAGTACTACACATACCAGATgCCCACCTGTGGGTGAAGAACTGTAAGGAGCTGTTGCCCTCCTCCTACCACGCCTCCCGCTTTGACCAGCCAATACAGGCCTCCAACTGGCTACGCAACTTCAGAACCACCAATGAACACTTCCTCTCCAAGATCAAGTTGAGGCAGCGGTAGGTGTGGACTAAAAGAGAGAGCACTGAGGAGGGACGGCCACTAGGGGAGCTGGTGGACATGGGAGTGTCTCGTGTGAAGAGCAGCAGTGATGTGGTGGGGGCAGTTCTAAAGGAGCTGAGGCTACAGGCTGGGGGGACAGAGGGGGGCTTCAGGCTGGCTGTGGCTGTTGATGGAGTCAACGGTCTCTGGGGAAGGACCACGCTCAAGAAGGAGGACAAGAGCCCTgtGGCTCCAGAGGAGTTGACGTTGGTTCATAACTTGAGGAAGATGATCAACAATGACTGGtgtggAGGGGCGGTCATCGCCACGCTGTCTCAGACAGGATCTCTCTACGCTCCAAGCTCTGCCTACCTGCCCCAGGAGCTGCTGGGAGAGGAGGGCTTTGACAGCATGGACCCATTTATCCCAGTACCAGTCTCCCTCTACAGTGAGAAGGAGTTTGAGAGCTGTTACCTCTACTACCTGGACCGCCACTGGCTACAACACCCACACAGTCagacagaggaagggaagaaaGAACTGATCTTCCTCAGCAACAGAAACCCTTCTGTACTGGAGAGACTGTGTGCCTTCCTGTAACATCACACATGGGCCCACACCCTCCCACTCACCCATAGAGATAGGACTCATCTTTatatctgtgacagcatgggcagtgccattgaggctataacccataggaatccccactcAGTTGACTACTTTGACCACTTTAAAATGGCGGAAGCCCTCGATGGTGCTGCCCATGCGACATCAAGGCCACTAGCATTCTCTATGGGACAAACGCCAACAGACTCATACATGGATTATAACGTTGCAGTTGTGTATGTGTCCCTCCATAAATTATTCTGTTGTGATGCATGATAGTGTCTTTCATAATAAAAATATACATAAACA
>TU252857
AGGAGGGCTTTGACAGCATGGACCCATTTATCCCAGTACCAGTCTCCCTCTACAGTGAGAAGGAGTTTGAGAGCTGTTACCTCTACTACCTGGACCGCCACTGGCTACAACACCCACACAGTCagacagaggaagggaagaaaGAACTGATCTTCCTCAGCAACAGAAACCCTTCTGTACTGGAGAGACTGTGTGCCTTCCTGTAACATCACACATGGGCCCACACCCTCCCACTCACCCATAGAGATAGGACTCATCTTTatatctgtgacagcatgggcagtgccattgaggctataacccataggaatccccactcAGTTGACTACTTTGACCACTTTAAAATGGCGGAAGCCCTCGATGGTGCTGCCCATGCGACATCAAGGCCACTAGCATTCTCTATGGGACAAACGCCAACAGACTCATACATGGATTATAACGTTGCAGTTGTGTATGTGTCCCTC

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0001666 response to hypoxia biological_process
GO:0005761 mitochondrial ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110520801 False 1467 mRNA 0.50 11 8906566 8912310
TU252857 True 464 lncRNA 0.50 2 8911704 8912250

Neighbor

gene id symbol gene type direction distance location
LOC110516768 LOC106605893 coding upstream 27913 8865764 ~ 8878653 (+)
LOC110520850 LOC106605893 coding upstream 52877 8840190 ~ 8853689 (+)
LOC110520836 LOC106605888 coding upstream 106102 8772336 ~ 8800464 (+)
LOC110520852 LOC106605924 coding upstream 134683 8767777 ~ 8771883 (+)
LOC110520796 fam189b coding upstream 141594 8715996 ~ 8766590 (+)
LOC110517169 LOC106605893 coding downstream 20461 8932771 ~ 8938698 (+)
LOC110520813 LOC106605815 coding downstream 70284 8982594 ~ 8987846 (+)
LOC110520819 LOC106575022 coding downstream 551027 9463337 ~ 9483086 (+)
LOC118944441 NA coding downstream 573290 9485600 ~ 9486125 (+)
LOC110520820 LOC107573682 coding downstream 578023 9490333 ~ 9508263 (+)
G221525 LOC106605893 non-coding upstream 27950 8847836 ~ 8878616 (+)
G221561 NA non-coding upstream 42905 8862338 ~ 8863661 (+)
G221526 LOC106591640 non-coding upstream 58845 8840224 ~ 8908728 (+)
G221546 NA non-coding upstream 79809 8826050 ~ 8826757 (+)
G221534 LOC106578276 non-coding downstream 8369 8920679 ~ 8923497 (+)
G221579 NA non-coding downstream 41136 8953446 ~ 8953780 (+)
G221580 NA non-coding downstream 41489 8953799 ~ 8954033 (+)
G222062 NA non-coding downstream 43461 8955771 ~ 8956027 (+)
G222063 NA non-coding downstream 48468 8960778 ~ 8961075 (+)
G221539 NA other upstream 42590 8861500 ~ 8863976 (+)
G221514 NA other upstream 174088 8728977 ~ 8732478 (+)
G222089 NA other downstream 123048 9035358 ~ 9035833 (+)
G222102 NA other downstream 154836 9067146 ~ 9068151 (+)
G222287 NA other downstream 532737 9445047 ~ 9445704 (+)
G222345 LOC106594812 other downstream 693995 9606305 ~ 9611139 (+)

Expression


Co-expression Network