LOC110520883 (LOC100136250)


Basic Information

Item Value
gene id LOC110520883
gene name LOC100136250
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8912439 ~ 8921058 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598328.2
GTCCTCGAATTCATCCCTGAAGTTGTACCAATTAGTATTCGAGACCCCTGTGAGAACCATGGGATTTGGTGGCGGAATGTTCGCTGCCATAGCGATGGAATAGGAGATATCTTTGCCTTCAGCCATCGGGGTAACATTAGGGATATAAGGCCAGAGCTGCTTCATCACCGCACAACTGCAACCTGCAATTCACCTCTTCAATCTACTGCTCCTAAATACTTGGAAGTTCATTTAAGAATTTGAGAATCATGAGTATGAACTACATGAGCACCGAGAGGATTCTGCTGAAAGAGGACTACCTCCTCTCCAACAATGGACAATTTAAAGCTATCTTTCAGACCGATGGCAACTTTGTGCTCTACGGTTGGGGTCGGGTTGTCTGGGCATCAAACACTGTGAACAAAGATGCTCAGAGGCTCATCCTCCAAAAGGATGGCAACCTGGTCATCTACACCAAACAGGACCATCCCATTTGGTCAAGTAACACTGGCCGTTGCAACAATACACAAAGAGGCCACCTCACCCTCACTGACAAAGGTACCCTGGAGCTCTACAGAGACCGAGAGGTGATCTGGACATCGTAACATCGACCGGCCCAACAATGCACAGAGGTCACCTCACCCTCACTGACGAAGGTGCCCTGATGCTCTACAGTCCCAGAAATGTGGTCTGGTGCTCTCGTGAGGACACTAGTAATGAGGCAGAGTAACAGCTTCACTTGACCATACCTGTCTACATCTACCACTAAACTGTATTCAAAAGCCTTGAGGCTTTAACCCTTTGATTTGGTCAAATAAAACTGTATTGACTTAAA
>XM_021598329.2
TAGTCCTCGAATTCATCCCTGAAGTTGTACCAATTAGTATTCGAGACCCCTGTGAGAACCATGGGATTTGGTGGCGGAATGTTCGCTGCCATAGCGATGGAATAGGAGATATCTTTGCCTTCAGCCATCGGGGTAACATTAGGGATATAAGGCCAGAGCTGCTTCATCACCGCACAACTGCAACCTGCAATTCACCTCTTCAATCTACTGCTCCTAAATACTTAATCATGAGTATGAACTACATGAGCACCGAGAGGATTCTGCTGAAAGAGGACTACCTCCTCTCCAACAATGGACAATTTAAAGCTATCTTTCAGACCGATGGCAACTTTGTGCTCTACGGTTGGGGTCGGGTTGTCTGGGCATCAAACACTGTGAACAAAGATGCTCAGAGGCTCATCCTCCAAAAGGATGGCAACCTGGTCATCTACACCAAACAGGACCATCCCATTTGGTCAAGTAACACTGGCCGTTGCAACAATACACAAAGAGGCCACCTCACCCTCACTGACAAAGGTACCCTGGAGCTCTACAGAGACCGAGAGGTGATCTGGACATCGTAACATCGACCGGCCCAACAATGCACAGAGGTCACCTCACCCTCACTGACGAAGGTGCCCTGATGCTCTACAGTCCCAGAAATGTGGTCTGGTGCTCTCGTGAGGACACTAGTAATGAGGCAGAGTAACAGCTTCACTTGACCATACCTGTCTACATCTACCACTAAACTGTATTCAAAAGCCTTGAGGCTTTAACCCTTTGATTTGGTCAAATAAAACTGTATTGACTTAAA

Function

NR:

description
mannose-specific lectin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598328.2 False 814 mRNA 0.47 4 8912439 8921056
XM_021598329.2 True 793 mRNA 0.47 4 8912439 8921058

Neighbor

gene id symbol gene type direction distance location
LOC110520884 LOC100136250 coding downstream 24786 8878988 ~ 8887653 (-)
LOC110516769 LOC100136250 coding downstream 50208 8853815 ~ 8862231 (-)
LOC110520835 ash1l coding downstream 72760 8804651 ~ 8839679 (-)
LOC110520892 LOC106605923 coding downstream 209176 8699031 ~ 8703263 (-)
LOC100136250 LOC100136250 coding upstream 17762 8938820 ~ 8949179 (-)
LOC110520856 LOC106591015 coding upstream 52898 8973956 ~ 8982283 (-)
LOC110520814 LOC106595728 coding upstream 67026 8988084 ~ 9050862 (-)
LOC110501040 LOC106605812 coding upstream 180367 9101425 ~ 9118437 (-)
LOC110500119 LOC105018975 coding upstream 201164 9122222 ~ 9150991 (-)
G222025 NA non-coding downstream 129 8852960 ~ 8912310 (-)
G222009 NA non-coding downstream 108773 8803105 ~ 8803666 (-)
G222007 NA non-coding downstream 109420 8801951 ~ 8803019 (-)
G221988 NA non-coding downstream 140506 8770564 ~ 8771933 (-)
G221987 NA non-coding downstream 144963 8763986 ~ 8767476 (-)
G222059 NA non-coding upstream 32366 8953424 ~ 8953678 (-)
G222064 NA non-coding upstream 42694 8963752 ~ 8963983 (-)
G222066 NA non-coding upstream 50418 8971476 ~ 8972335 (-)
G222412 NA non-coding upstream 64586 8985644 ~ 8987837 (-)
G221986 NA other downstream 148555 8763119 ~ 8763884 (-)
G221807 adar other downstream 389231 8503184 ~ 8523208 (-)
G221806 NA other downstream 501630 8394361 ~ 8410809 (-)
G221788 LOC106574877 other downstream 562150 8345683 ~ 8350289 (-)
G222465 NA other upstream 172122 9093180 ~ 9095216 (-)
G222607 LOC106574954 other upstream 573738 9494796 ~ 9496853 (-)
LOC110508584 LOC104949237 other upstream 610116 9528874 ~ 9551643 (-)
LOC110520821 LOC106574299 other upstream 640687 9559133 ~ 9594654 (-)

Expression


Co-expression Network