LOC110517169 (LOC106605893)


Basic Information

Item Value
gene id LOC110517169
gene name LOC106605893
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8932771 ~ 8938698 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967958.1
agtaaaaatgtgttttgtgcttcaccactgtactgtagttcATTCTAACGGTCCTaaattctagaacactgctgtgctTAGGCGTACACGTTTTGGACTATGATAGACGCTCTACACCTGCCTCTTACCTGTGGAATGTGATGATGTCACGGACAGGTAGCGCAGGTGCGGCCGCTCCATGGCAGTGGGTGTGGCCAGCAGCAGGAGGCGGTTGGCATGGAGATGAGACCGGAGACATTCTCCATCTTCAGAACACAGGAGAACGACCCGgCCTGTCAGTCAGAACAGCACCTAGGGCAGTACTACACTGTGCCCCCCTCCCACTTCCACACTGTCTTCCCCCATGGCCTGCCTCCACGATACCAAcaacagGTGAAGACGTTTAACGAGGGCTGTGTGATGGTGAGGCAGCCTGCTCTGGAGCTGATATCTCACCTGAAGAGAGCTGACTACAGCAAGCCCACCCTGCGCTACCTACTCTATGGGGTGAAGGGCAGAGGGAAGACCATGTCTCTCTGTCAAACTGTCCACTACTGCTCCACACAAGGATGGCTAGTACTACACATACCAGATgCCCACCTGTGGGTGAAGAACTGTAAGGAGCTGTTGCCCTCCTCCTACCACGCCTCCCGCTTTGACCAGCCAATACAGGCCTCCAACTGGCTACGCAACTTCAGAACCACCAATGAACACTTCCTCTCCAAGATCAAGTTGAGGCAGCGGTAGGTGTGGACTAAAAGAGAGAGCACTGAGGAGGGACGGCCACTAGGGGAGCTGGTGGACATGGGAGTGTCTCGTGTGAAGAGCAGCAGTGATGTGGTGGGGGCAGTTCTAAAGGAGCTGAGGCTACAGGCTGGGGGGACAGAGGGGGGCTTCAGGCTGGCTGTGGCTGTTGATGGAGTCAACGGTCTCTGGGGAAGGACCACGCTCAAGAAGGAGGACAAGAGCCCTgtGGCTCCAGAGGAGTTGACGTTGGTTCATAACTTGAGGAAGATGATCAACAATGACTGGtgtggAGGGGCGGTCATCGCCACGCTGTCTCAGACAGGATCTCTCTACGCTCCAAGCTCTGCCTACCTGCCCCAGGAGCTGCTGGGAGAGGAGGGCTTTGACAGCATGGACCCATTTATCCCAGTACCAGTCTCCCTCTACAGTGAGAAGGAGTTTGAGAGCTGTTACCTCTACTACCTGGACCGCCACTGGCTACAACACCCACACAGTCagacagaggaagggaagaaaGAACTGATCTTCCTCAGCAACAGAAACCCTTCTGTACTGGAGAGACTGTGTGCCTTCCTGTAACATCACACATGGGCCCACACCCTCCCACTCACCCATAGAGATAGGACTCATCTTTatatctgtgacagcatgggcagtgccattgaggctataacccataggaatccccactcAGTTGACTACTTTGACCACTTTAAAATGGCGGAAGCCCTCGATGGTGCTGCCCATGCGACATCAAGGCCACTAGCATTCTCTATGGGACAAACGCCAACAGACTCATACATGGATTATAACGTTGCAGTTGTGTATGTGTCCCTCCATAAATGATTCTGTTGTGATGCATGATAGTGTCTTTCATAATAAAAATATACATAAACAGTCA

Function

NR:

description
28S ribosomal protein S29, mitochondrial-like isoform X2

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0001666 response to hypoxia biological_process
GO:0005761 mitochondrial ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component

KEGG:

id description
K17408 DAP3, MRPS29; small subunit ribosomal protein S29

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967958.1 True 1627 mRNA 0.53 11 8932771 8938698

Neighbor

gene id symbol gene type direction distance location
LOC118945318 LOC106575331 coding upstream 6714 8898021 ~ 8926057 (+)
LOC110520801 LOC106605893 coding upstream 20461 8906566 ~ 8912310 (+)
LOC110516768 LOC106605893 coding upstream 54118 8865764 ~ 8878653 (+)
LOC110520850 LOC106605893 coding upstream 79082 8840190 ~ 8853689 (+)
LOC110520836 LOC106605888 coding upstream 132307 8772336 ~ 8800464 (+)
LOC110520813 LOC106605815 coding downstream 43896 8982594 ~ 8987846 (+)
LOC110520819 LOC106575022 coding downstream 524639 9463337 ~ 9483086 (+)
LOC118944441 NA coding downstream 546902 9485600 ~ 9486125 (+)
LOC110520820 LOC107573682 coding downstream 551635 9490333 ~ 9508263 (+)
LOC118945352 NA coding downstream 674196 9612894 ~ 9622952 (+)
G221534 LOC106578276 non-coding upstream 9274 8920679 ~ 8923497 (+)
G221567 NA non-coding upstream 13511 8886327 ~ 8919260 (+)
G221525 LOC106605893 non-coding upstream 54155 8847836 ~ 8878616 (+)
G221579 NA non-coding downstream 14748 8953446 ~ 8953780 (+)
G221580 NA non-coding downstream 15101 8953799 ~ 8954033 (+)
G222062 NA non-coding downstream 17073 8955771 ~ 8956027 (+)
G222063 NA non-coding downstream 22080 8960778 ~ 8961075 (+)
G222065 NA non-coding downstream 32290 8970988 ~ 8971364 (+)
G221526 LOC106591640 other upstream 24043 8840224 ~ 8908728 (+)
G221539 NA other upstream 68795 8861500 ~ 8863976 (+)
LOC110520796 fam189b other upstream 169182 8715996 ~ 8766590 (+)
G222089 NA other downstream 96660 9035358 ~ 9035833 (+)
G222102 NA other downstream 128448 9067146 ~ 9068151 (+)
G222287 NA other downstream 506349 9445047 ~ 9445704 (+)
G222345 LOC106594812 other downstream 667607 9606305 ~ 9611139 (+)

Expression


Co-expression Network