LOC100136250 (LOC100136250)


Basic Information

Item Value
gene id LOC100136250
gene name LOC100136250
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8938820 ~ 8949179 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963171.1
TCAATCTACTGCTCCTAAATACTTAATCATGAGTAAGAACTACATGAGCACCGAGAGGATTCTGCTGAAAGAGGACTACCTCCTCTCCAACAATGGACAATTTAAAGCTATCTTTCAGACCGATGGCAACTTTGTGCTCTACGGTTGGGGTCGGGTTGTCTGGGCATCAAACACTGTGAACAAAGATGCTCAGAGGCTCATCCTCCAACAGGATGGAAACCTGGTCATCTACACCAAACAGGACCATCCCATTTGGGCAAGTAACACTGGCCGTTGCAACAATACACAAAGAGGCCACCTCACCCTCACTGACAAAGGTACCCTGGAGCTCTATAGAGACCGAGAGGTGATCTGGACATCGTAACATCGACCAGCCCAACAATGCACAAAGAGGTCACCTCACCCTCCCTGACGAAGGTGCCCTGATGCTCTACAGTCCCAGAAATATGGTCTGGTGCTCTCGTGAGGACACTAGTAATGAGGCAGAGTAACAGCTTCACTTGATCATACCTGTCTACATCTACCACTAAACTGTATTCAAAAGCCTTGAGGCTTTTTAACCCTTTGATTTGGTCAAATAAAACTGTATTGACTTAAAGTA
>NM_001124514.1
CTAAATACTTGGAAGTTCATTTAAGAATTTGAGAATCATGAGTAAGAACTACATGAGCACCGAGAGGATTCTGCTGAAAGAGGACTACCTCCTCTCCAACAATGGACAATTTAAAGCTATCTTTCAGACCGATGGCAACTTTGTGCTCTACGGTTGGGGTCGGGTTGTCTGGGCATCAAACACTGTGAACAAAGATGCTCAGAGGCTCATCCTCCAACAGGATGGAAACCTGGTCATCTACACCAAACAGGACCATCCCATTTGGGCAAGTAACACTGGCCGTTGCAACAATACACAAAGAGGCCACCTCACCCTCACTGACAAAGGTACCCTGGAGCTCTATAGAGACCGAGAGGTGATCTGGACATCGTAACATCGACCAGCCCAACAATGCACAAAGAGGTCACCTCACCCTCCCTGACGAAGGTGCCCTGATGCTCTACAGTCCCAGAAATATGGTCTGGTGCTCTCGTGAGGACACTAGTAATGAGGCAGAGTAACAGCTTCACTTGATCATACCTGTCTACATCTACCACTAAACTGTATTCAAAAGCCTTGAGGCTTTTTAACCCTTTGATTTGGTCAAATAAAACTGTATTGACTTAAA

Function

NR:

description
lectin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963171.1 False 601 mRNA 0.46 3 8938820 8949179
NM_001124514.1 True 607 mRNA 0.46 3 8938823 8949165

Neighbor

gene id symbol gene type direction distance location
LOC110520883 LOC100136250 coding downstream 17762 8912439 ~ 8921058 (-)
LOC110520884 LOC100136250 coding downstream 51167 8878988 ~ 8887653 (-)
LOC110516769 LOC100136250 coding downstream 76589 8853815 ~ 8862231 (-)
LOC110520835 ash1l coding downstream 99141 8804651 ~ 8839679 (-)
LOC118964372 NA coding downstream 236803 8701883 ~ 8702017 (-)
LOC110520856 LOC106591015 coding upstream 24777 8973956 ~ 8982283 (-)
LOC110520814 LOC106595728 coding upstream 38905 8988084 ~ 9050862 (-)
LOC110501040 LOC106605812 coding upstream 152246 9101425 ~ 9118437 (-)
LOC110500119 LOC105018975 coding upstream 173043 9122222 ~ 9150991 (-)
LOC110508553 LOC105018974 coding upstream 211804 9160983 ~ 9231958 (-)
G222025 NA non-coding downstream 26510 8852960 ~ 8912310 (-)
G222009 NA non-coding downstream 135154 8803105 ~ 8803666 (-)
G222007 NA non-coding downstream 135801 8801951 ~ 8803019 (-)
G221988 NA non-coding downstream 166887 8770564 ~ 8771933 (-)
G221987 NA non-coding downstream 171344 8763986 ~ 8767476 (-)
G222059 NA non-coding upstream 4245 8953424 ~ 8953678 (-)
G222064 NA non-coding upstream 14573 8963752 ~ 8963983 (-)
G222066 NA non-coding upstream 22297 8971476 ~ 8972335 (-)
G222412 NA non-coding upstream 36465 8985644 ~ 8987837 (-)
G221986 NA other downstream 174936 8763119 ~ 8763884 (-)
G221807 adar other downstream 415612 8503184 ~ 8523208 (-)
G221806 NA other downstream 528011 8394361 ~ 8410809 (-)
G221788 LOC106574877 other downstream 588531 8345683 ~ 8350289 (-)
G222465 NA other upstream 144001 9093180 ~ 9095216 (-)
G222607 LOC106574954 other upstream 545617 9494796 ~ 9496853 (-)
LOC110508584 LOC104949237 other upstream 581995 9528874 ~ 9551643 (-)
LOC110520821 LOC106574299 other upstream 612566 9559133 ~ 9594654 (-)

Expression


Co-expression Network