LOC110520856 (LOC106591015)


Basic Information

Item Value
gene id LOC110520856
gene name LOC106591015
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8973956 ~ 8982283 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598296.2
TGCGCATTGCACGAAGGGATGTTGGCGGACCACCCTCTTTGGTATGCAGGAGGACCGACGTCACTGTTTGTGCTATCCTGGGGAAGATGGCGGAAGCTGCGGCGGTTCCCCCGCATCGGTTCTTCTGTCATTGTTGTAAGGGAGAAGTAAGCCCCAAGCTCCCGGAGTACATCTGTCCCAGGTGTGAGTCTGGCTTTATAGAGGAGGTAACAGAAGATTCCAGTCTGCTAGAGGGTGGCACTAACGGGACAGATGACACAGCCACACAGTTTGCAGAGCAGCTGTGGCACCTGTTGTTTGTAGAGAGGCCTTTCACAGTGGATGGTGACAGTCCAGACTCAGAGCCCCGGGTCCCTGGTGGAGGGGTTGGGGTAGGATCAGGGGGGTTAGGTCTGGGGGGTCTGGGAGGGCTAGGAGGCCTGGGAGGAGGTCCTATCGGAGGGTCAGTCCCTGCTGGGCTAGGAGGACCCCTGGGGGGTCCTCTGGGAGGGGGGGAACACTGGGGGCCCGGTCGCCCCCCTCGCCTGCACAGTCAGCGGAGGTACCGCTCCAGAGGGAGCAGCAGACCTGACCGCTCACCTGCCGTAGAGGGgataGTACAACAGTTTCTGGCTGGTCTATTTGCCAACTCTGGAGTTCCTGGCTCACCTCCCCTCTCTTGgACGGGGATGCTACACTCTAACCCAGGGGACTATGCTTGGGGACAGGGGGGACTGGACGCAGTCATCACACAGTTGTTAGGTCAGTTTGAGAACACGGGCCCTCCTCctgcagagaaagagaagatCTCCTCCATACCTACAGTCAACGTGTCTCAGGATCAAGCAGactGCAGTATGGAGTGTCCGGTGTGCAAGGAGGACTTTGCAGTGGGAGAGCCCGTCAGACAGCTACCCTGCAACCACTTCTTCCACTCAGACTGTATAGTACCCTGGCTGGAAATGcATGATACGTGTCCTGTGTGTAGGAAGGGGTTGAATGGAGAAGACAGCAACACCCAGAACCCCCCAGAATCCCCCTCTCTAAATACGGACCCCCGCACACAGGAGAGATGGTCCTTCTGAAATACACCTCCCCCTCATCCCCTTATCGCACCTCTCTGACCTCCTTTTAATCTCTCTCATCCGTCCTTTATTCCACTTTTTTTACCCTCATCCCCCCCTTCTCTACGAACTACTGCACACGGGAGATAAGGACTTTCTGAAGGATAGACCTCCTCCATCTCTGCCTCATTCCTCCGTGTCATTCCTTcatctcactcctcctctctgaaTCATCTCTTCATCTACAGTCATAGGATGGTCATCTCAGTTTGGCTGTTCCTGTCTCAATGCCCCTGGAACCATGttcacacagagtacacacacacacacacgtcatgatCCATTAGCTGTCCTCTGCCTCATCATGACCAAGCACTTGCCTTTACCTCGCTTCAAACATCAACCACATCTCGCTTTTTCTACTCTTTTCTCCATATTCCTCTTTTTCCATCCTTCTGAAAAGCACTGCTGTAAAACAATGttgtctctccctacctctctactcCTGggatgcatctcaatagtctagtggcttcctctcctcatcaTCTGCACTGAACATGGCAGATGCTCACCAGGAATTTGATTTTGCCTTTCATCATTTTGACTATTGAGACGGGGCCCTCCACAACAATCTTTCGCTGTCATTCTGGTGTATATATTAAACAGATTGCATCGCTCTGTCA
>XM_021598297.2
TAAGCTAATTTTCCCAAAGAGTTGCGCATTGCACGAAGGGATGTTGGCGGACCACCCTCTTTGGTATGCAGGAGGACCGACGTCACTGTTTGTGCTATCCTGGGGAAGATGGCGGAAGCTGCGGCGGTTCCCCCGCATCGGTTCTTCTGTCATTGTTGTAAGGGAGAAGTAAGCCCCAAGCTCCCGGAGTACATCTGTCCCAGGTGTGAGTCTGGCTTTATAGAGGAGGTAACAGAAGATTCCAGTCTGCTAGAGGGTGGCACTAACGGGACAGATGACACAGCCACACAGTTTGCAGAGCTGTGGCACCTGTTGTTTGTAGAGAGGCCTTTCACAGTGGATGGTGACAGTCCAGACTCAGAGCCCCGGGTCCCTGGTGGAGGGGTTGGGGTAGGATCAGGGGGGTTAGGTCTGGGGGGTCTGGGAGGGCTAGGAGGCCTGGGAGGAGGTCCTATCGGAGGGTCAGTCCCTGCTGGGCTAGGAGGACCCCTGGGGGGTCCTCTGGGAGGGGGGGAACACTGGGGGCCCGGTCGCCCCCCTCGCCTGCACAGTCAGCGGAGGTACCGCTCCAGAGGGAGCAGCAGACCTGACCGCTCACCTGCCGTAGAGGGgataGTACAACAGTTTCTGGCTGGTCTATTTGCCAACTCTGGAGTTCCTGGCTCACCTCCCCTCTCTTGgACGGGGATGCTACACTCTAACCCAGGGGACTATGCTTGGGGACAGGGGGGACTGGACGCAGTCATCACACAGTTGTTAGGTCAGTTTGAGAACACGGGCCCTCCTCctgcagagaaagagaagatCTCCTCCATACCTACAGTCAACGTGTCTCAGGATCAAGCAGactGCAGTATGGAGTGTCCGGTGTGCAAGGAGGACTTTGCAGTGGGAGAGCCCGTCAGACAGCTACCCTGCAACCACTTCTTCCACTCAGACTGTATAGTACCCTGGCTGGAAATGcATGATACGTGTCCTGTGTGTAGGAAGGGGTTGAATGGAGAAGACAGCAACACCCAGAACCCCCCAGAATCCCCCTCTCTAAATACGGACCCCCGCACACAGGAGAGATGGTCCTTCTGAAATACACCTCCCCCTCATCCCCTTATCGCACCTCTCTGACCTCCTTTTAATCTCTCTCATCCGTCCTTTATTCCACTTTTTTTACCCTCATCCCCCCCTTCTCTACGAACTACTGCACACGGGAGATAAGGACTTTCTGAAGGATAGACCTCCTCCATCTCTGCCTCATTCCTCCGTGTCATTCCTTcatctcactcctcctctctgaaTCATCTCTTCATCTACAGTCATAGGATGGTCATCTCAGTTTGGCTGTTCCTGTCTCAATGCCCCTGGAACCATGttcacacagagtacacacacacacacacgtcatgatCCATTAGCTGTCCTCTGCCTCATCATGACCAAGCACTTGCCTTTACCTCGCTTCAAACATCAACCACATCTCGCTTTTTCTACTCTTTTCTCCATATTCCTCTTTTTCCATCCTTCTGAAAAGCACTGCTGTAAAACAATGttgtctctccctacctctctactcCTGggatgcatctcaatagtctagtggcttcctctcctcatcaTCTGCACTGAACATGGCAGATGCTCACCAGGAATTTGATTTTGCCTTTCATCATTTTGACTATTGAGACGGGGCCCTCCACAACAATCTTTCGCTGTCATTCTGGTGTATATATTAAACAGATTGCATCGCTCTGTCA

Function

NR:

description
E3 ubiquitin-protein ligase RNF115-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598296.2 False 1729 mRNA 0.53 9 8973956 8982261
XM_021598297.2 True 1748 mRNA 0.53 9 8973956 8982283

Neighbor

gene id symbol gene type direction distance location
LOC100136250 LOC100136250 coding downstream 24777 8938820 ~ 8949179 (-)
LOC110520883 LOC100136250 coding downstream 52898 8912439 ~ 8921058 (-)
LOC110520884 LOC100136250 coding downstream 86303 8878988 ~ 8887653 (-)
LOC110516769 LOC100136250 coding downstream 111725 8853815 ~ 8862231 (-)
LOC110520835 ash1l coding downstream 134277 8804651 ~ 8839679 (-)
LOC110520814 LOC106595728 coding upstream 5801 8988084 ~ 9050862 (-)
LOC110501040 LOC106605812 coding upstream 119142 9101425 ~ 9118437 (-)
LOC110500119 LOC105018975 coding upstream 139939 9122222 ~ 9150991 (-)
LOC110508553 LOC105018974 coding upstream 178700 9160983 ~ 9231958 (-)
LOC110508538 LOC106594717 coding upstream 251166 9233449 ~ 9333337 (-)
G222066 NA non-coding downstream 1621 8971476 ~ 8972335 (-)
G222064 NA non-coding downstream 9973 8963752 ~ 8963983 (-)
G222059 NA non-coding downstream 20278 8953424 ~ 8953678 (-)
G222025 NA non-coding downstream 61646 8852960 ~ 8912310 (-)
G222009 NA non-coding downstream 170290 8803105 ~ 8803666 (-)
G222412 NA non-coding upstream 3361 8985644 ~ 8987837 (-)
G222442 NA non-coding upstream 69111 9051394 ~ 9051608 (-)
G222448 NA non-coding upstream 74659 9056942 ~ 9057573 (-)
G222451 NA non-coding upstream 82277 9064560 ~ 9064848 (-)
G222023 LOC100136250 other downstream 24769 8853817 ~ 8949187 (-)
G221986 NA other downstream 210072 8763119 ~ 8763884 (-)
G221807 adar other downstream 450748 8503184 ~ 8523208 (-)
G221806 NA other downstream 563147 8394361 ~ 8410809 (-)
G222465 NA other upstream 110897 9093180 ~ 9095216 (-)
G222607 LOC106574954 other upstream 512513 9494796 ~ 9496853 (-)
LOC110508584 LOC104949237 other upstream 548891 9528874 ~ 9551643 (-)
LOC110520821 LOC106574299 other upstream 579462 9559133 ~ 9594654 (-)

Expression


Co-expression Network