Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110520814 |
| gene name | LOC106595728 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 8988084 ~ 9050862 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| id | name | namespace |
|---|---|---|
| GO:0007229 | integrin-mediated signaling pathway | biological_process |
| GO:0007155 | cell adhesion | biological_process |
| GO:0008305 | integrin complex | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036968013.1 | False | 6398 | mRNA | 0.47 | 30 | 8988084 | 9050862 |
| TU254001 | True | 538 | lncRNA | 0.44 | 2 | 8988138 | 8989011 |
8,970,000
8,980,000
8,990,000
9,000,000
9,010,000
9,020,000
9,030,000
9,040,000
9,050,000
9,060,000
9,070,000
9,080,000
9,090,000
9,100,000
NC_048567.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110520856 | LOC106591015 | coding | downstream | 5801 | 8973956 ~ 8982283 (-) |
| LOC100136250 | LOC100136250 | coding | downstream | 38905 | 8938820 ~ 8949179 (-) |
| LOC110520883 | LOC100136250 | coding | downstream | 67026 | 8912439 ~ 8921058 (-) |
| LOC110520884 | LOC100136250 | coding | downstream | 100431 | 8878988 ~ 8887653 (-) |
| LOC110516769 | LOC100136250 | coding | downstream | 125853 | 8853815 ~ 8862231 (-) |
| LOC110501040 | LOC106605812 | coding | upstream | 50563 | 9101425 ~ 9118437 (-) |
| LOC110500119 | LOC105018975 | coding | upstream | 71360 | 9122222 ~ 9150991 (-) |
| LOC110508553 | LOC105018974 | coding | upstream | 110121 | 9160983 ~ 9231958 (-) |
| LOC110508538 | LOC106594717 | coding | upstream | 182587 | 9233449 ~ 9333337 (-) |
| LOC118945333 | NA | coding | upstream | 268784 | 9319354 ~ 9389195 (-) |
| G222412 | NA | non-coding | downstream | 247 | 8985644 ~ 8987837 (-) |
| G222066 | NA | non-coding | downstream | 15749 | 8971476 ~ 8972335 (-) |
| G222064 | NA | non-coding | downstream | 24101 | 8963752 ~ 8963983 (-) |
| G222059 | NA | non-coding | downstream | 34406 | 8953424 ~ 8953678 (-) |
| G222025 | NA | non-coding | downstream | 75774 | 8852960 ~ 8912310 (-) |
| G222442 | NA | non-coding | upstream | 532 | 9051394 ~ 9051608 (-) |
| G222448 | NA | non-coding | upstream | 6080 | 9056942 ~ 9057573 (-) |
| G222451 | NA | non-coding | upstream | 13698 | 9064560 ~ 9064848 (-) |
| G222453 | NA | non-coding | upstream | 17971 | 9068833 ~ 9069221 (-) |
| G222435 | NA | non-coding | upstream | 21074 | 9071936 ~ 9072618 (-) |
| G222023 | LOC100136250 | other | downstream | 38897 | 8853817 ~ 8949187 (-) |
| LOC110520835 | ash1l | other | downstream | 167017 | 8804651 ~ 8839679 (-) |
| G221986 | NA | other | downstream | 224200 | 8763119 ~ 8763884 (-) |
| G221807 | adar | other | downstream | 464876 | 8503184 ~ 8523208 (-) |
| G221806 | NA | other | downstream | 577275 | 8394361 ~ 8410809 (-) |
| G222465 | NA | other | upstream | 42318 | 9093180 ~ 9095216 (-) |
| G222607 | LOC106574954 | other | upstream | 443934 | 9494796 ~ 9496853 (-) |
| LOC110508584 | LOC104949237 | other | upstream | 480312 | 9528874 ~ 9551643 (-) |
| LOC110520821 | LOC106574299 | other | upstream | 510883 | 9559133 ~ 9594654 (-) |
