LOC110520814 (LOC106595728)


Basic Information

Item Value
gene id LOC110520814
gene name LOC106595728
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8988084 ~ 9050862 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968013.1
GAAGTCGAGTTGAGGGACGCGCGAGGGAAGGAAGGTCTCCTCGCGCTGGAATAAAAGCGCTATTGATTGTTGCTTTGGAGTAAAACTCCACTATTCAATGAGGGATACAATCGCTATAATTGAGGGAAAACGACGAAAAAGATGGATATAACCAACCAGAAGTGTGAAAATTGAAACAGAAAAGTTGTCAAGAAAACCCAAACATTAATTTACCTCAAACTGTTTGGTTGAAAGATGAATATGGGTATTTTTTTCAGATAATTTTTGGAGCGTCGAGCCAGGAGGAACATTCAGCAATAGAAAAGTAGACTATCTGACTTATAGTTAGGCttatgggtttttctttattggaAGCAATTAAACATGCATTTGAGAATCTGTTACGCTTTAGTGAAGGTTTAACGACACTAAATTTGACTTTTCTTCGGGACAGGTGTTGGTTTTGAGCTTGAATCAGTTGTTTAGTTGTTTTTGACTAGTTGTTTAGACGTTTGAGGTGTTAGTTGCGCACAGGTTAAGGTAATAATTTATGGCACATATTCCAGCCCCAAAATATTTAGATAGTTTAGGCTACTGTTtgtcataaataaaataaacctaGAACAACCTCTGTTTAATTCATTAAAAAGCTGTCAACATATCGTTAAACCTGATAATGGTTACAGCAACAGACAATAACTAAGTAGTCTGTTTTTCCCTGAATAATATGTGAAGCAGGGTTGTCGGAAGCAACCCAACACGGTTACATTACAACGCGCCCAAGCAATACCACTGGAACTGTGTTTTTACGGTTTTCACGGATCCCTGGGGAACACATCGAGTTGAAAGACTCGTGCCGGAGCACTGAATTGAAACGAACTCTAGGGAAATTAAAGCCCAAGTCCGGAACAGAAAGAGAGCCCTTCCATCCTTTACAACATGGAGCTGCACAAATACCTGCTACTCCTCAAGTTCATTGTTCTCCTCAAAGGGTTGTGTGAGTGTTTCAACATCGATGTTAAGCGGCCTCGTATCTACACCGGTCCAGAGGAGGCCCTATTTGGTTTCTCTGTGCTACAGCATGACAATGCGGGGGACAAATCGATGCTGGTTGGTGCTCCTTGGGATGGACCTTCCAATACCAGGAGAGGAGACGTGTACAAATGCAtcgtgggagaggagaggagctccaACTGCACCAAAACCAACCTAGgtGAGAGCACGTTACAGAATGTATCTAGAAACCTGAAGAACTCTCATCTAGGAATGACCCTCAGTCCAGACTCACCTGATGGATTCCTGgcgtGTGCGCCCCTGTGGTCTCAGGAGTGTGGTACCTCAGTCTTCAGTACGGGGATCTGTGTTTCTGTCAGCAACGACCTGGAACCTAGAGAGACCATCGCCCCTACAGCACAGAGATGTGCAACATACATGGACATAGTGATCGTTCTGGATGGCTCCAATAGTATCTATCCCTGGTATGAAGTCCAGAACTTCCTCAGTAACATCCTCAGCAAGTTCCATATCAGCCCAGAACAGATGCAGGTGGGGGTTTTGCAGTACGGTGAGGTTGCGGTCCATGAGTGGTCACTGAGAGACTACCAGACAACACAGGAGGTGGTTGAAGCGGCTAAGAACATCAGCCGACAGGAGGGGCGGGAGACACGCACAGCATACGCCATCCACATGGGCTGTACGGAGGCATTCAGCCCTGAGCGGGGGGCGAGGGAGGGTGCCACCAAAGTCATGATCGTGGTGACGGACGGAGAGTCACATGATGGGGAGGAGCTACCGGATGCTCTGGAGGAGTGTGAGAAGAGAAACATCACCAGATATGCCATcgctgtatTGGGTCACTACATCCGCAGGCAGCAGGACCCAGAGACGTTTATCAGTGAGATCAAGTACATTGCCAGCGACCCTGACGACAAATACTTCTTCAACGTGACTGACGAGGCGGCACTCAACGACATCGTAGATGCACTAGGAGACCGCATCTTCACTctagaggGGACGCTGGGGTACAACGAGAGCTCCTTCAAGTTTGAGATGTCCCAGATTGGCTTCTCCACACACGTTCTCGATGACGGCATCCTGTTTGGGATGGTGGGGGCGTATGACTGGGACGGAGGGGTGCTGAAGGAGGGCGCTGAGGGCCGCATCATGCCCACCAGAGAGGCCTTTGAGTCAGAGTTCCCCCAGGAGCTCAAGAACCATGCTGCCTATCTGGgctACACAGTGTCGTCAGTGATAGTGGGAGACTGGAGGAGGCTGTATGTGGCTGGAGCTCCCAGGTTCAAACACAAAGGAAAGGTCATTCTGTTTGAACTGAGCGACAATGGAGATGTCAACATTGCACAGGCCCTCAATGGAGAACagattGGGTCGTACTATGGCAGTGAGGTGTGTGGGTTGGACGTGGACCAGGACGGCATTACTGATGTTCTGCTGGTGGCAGCACCCATGTACCTGGGCCCTGGCAACAAGGAGGCAGGCAGAGTCTACATCTACTCCCtcagtggggaggagGTGTTTGTGTCTAACGGTACTCTGAAGGCAGAGGATAGGTTCCAGGATGCTAGGTTTGGCTACGCCCTGGCCTCCGCCCCAGACCTCAACCATGACGGGTACACTGACCTGCTGGTGGGGGCACCCCTAGAGGACGGACACAATGGGGCCATATACGTCTACCACGGCCAGGGCATACACATCATCCACAACTACAAACAGCGTATCGCAGGGTcgtccctgtccccctctctgcaGTATTTTGGGCGCAGTGTGAGTGCCAGATTAGACCTGGATGGAGATGGTCTGTTAGACCTGGCTGTGGGGGCCCAGGGCAGTGCTGTACTACTCAGttCTCGTAGTATAGTCCAGATCAACATGAGTCTGTCCTTCCAGCCCCACTCCATCAACGTCATCCAGAAGACATGtcagagaggagcgagggagtcTGCCTGTCTCAACGCTACAGCCTGCTTCCTGGCTCTGTCCCGTTCCCCTGGAACTCACAGCAGCAGCTTCgatCTGTCGGTGGTGGCCATGTTGGATGAGCGAAAGTTGACAGCGAGGGCGTTGTTTGACGACAGCAAccagagacagacacagctggGGGTCAGAGTTCACACAGGACAGACCGTCTGCCACAACCTGACCTTCCATGTGTTTGACACAGCAGACTACATCCGTCCAATCAGTTTCTCCCTGCGCTTTAAGATCAACGACACAGAGAGTGGCCCAGTGCTGGACGAAGGCTGGCCCACCACCTTCAAGAGATCGATTGCCTTCTTCAAAGACTGTGGTGAGGATGATGTGTGTGTCACTGATCTGGTGCTGCAGGCTCATATGGACATCTCTGGGACAAGACAGCAGCCCTATGTGATCCGTAGCCCTCGCAGACGTCTGGCTGTAGAAGTCCAGCTGCAGAACAGACTGGAGAACGCCTACAACACCAGCCTGACACTGCACTACTCACGCAACCTCCACTTCTCTAGTCTCAGTATACGGgaggatACCCAGTTGAAAATTGAGTGTACATCTCTCAGTTCCAACAGTCATTCCTGTAATGTCAGCTATCCTGTGTTCCGCTCCCACTccaagGTGAACTTCATGTTAGAGTTTGAGTTCAGCTGTACGTCTCTGCTCAGTAAAGTCCAGATGAAACTCACAGTTGCCAGTgacagtgtggagagagaggctACGCTGGGAGACAACAGTGTTCAGCTCCAGACTGTGGTTCAGTACGAACCTGACCTCTTCATCACCAGTGACTCCAATCTGAACCGTTATGAGGTCCACCCAACCAGAACCATATCAGAGGCAATAGGACCAGAGTTCTACACACACTTCAGGctgCAGAACCTGGGCTGTTACAGTGTGAGTAACCTGGAGTTGAGGCTGAGCCTGCCCTCTGTAGCAGCTGGAGACAGAATCTTCATGGCTGTTACTGAGGTCTTCTCTTACAACGTGACAGGGGTGAACTGCAGTGTAGACAGTGACGTGTCCCAgcagaaggacagacagagagatgtacgACCACTACATCCTGAAGACATGCAACAGACTGACCTACTGAACTGCAGCAGGTCGtggtgtgtggaggtggtgtGTGAGGTACAGCAGCTGCATCGAGGACAGACCGCTCTCATACGAGTCAGCCGCAGGGTCCACGACAACTTCTTCAGACAGGCTAAGTTTAAGGTGGTGAGGATAGTGAGTGCCTATCATCTGGCTGCTCAGGAATCTAACCTGGTCACTCTGGGGAGTGGCGCCATctggagggagACGGTGTTGGAGGTACTAAAGGGGCGGGCCATCCCTATTTCTCTCTGGATTCTGATAGGTAGCATCATTGGAGGGCTTCTGCTATTGGCCCTCATCATCTTCGCAATGTGGAAGCTGGGGTTCTTCACTCGTAAACAGATAAAGGACGAGGAACTCGAGGACTGAGCCCGTCCCTCGCCGCCATGATGTCAGTCAATGGATACAGTATCTGTGACAACCAGAGAACCACAGAAACAGTCCACTTCGTGCCCATCCCCATGGCAACGACCTGCACAGAGACTGCTCCGCCCCCCCAGCAATAAAAACAGATGCCTTCCCTCTTCTAAATCATGCACCCCCCCATAAAGAACGCACAGCCGGTATAGATGAGCGTTGCCCAGTGTGTGTCTGAACTGTCAAAACACCTAACACCACATGGCACAGACTGCATCTATCGTCAGACACCCCAACATCTTGTCTGTTTCTACAGGTGAACCCatggctgtagggctgtagttaCACACCTGTTTAGAAATATACAGCAGGAAGGATGTGTACATGAGTTTTCTTCAGAGATGTCCCAGACAGGAAATAATGCTGTACACtacatgtcaaactcattccacggagggccgagtgtctgcaggttcactccacccttgtacttgatggATGAATTAAGGTCACGACTTAGTGAGGGACTCCCCTcaactggttgtctaggtcttaattgaatgGACAAAACAAAAACCTACAGACACacagccctctgtggaatgagtttgacactcctGGTGCAATGTGACTTGGTATGATGTTCAATGACTGCAGACTTCAAACAGCGTAGATCTGTATAAGTAGATATAGTACAGGCATCGACCTGTAATTAGTACCATGTTGTATAAGTAGATATAGTACAGGCATCGACCTGTAATTAGTACCATGTTGTATAAGTAGATACCATACAGGCATCGACCTGTAATTAGTACCATGTTGTATAAGTAGATACAGTACAGGTATCAACCTGTAATTAGTACCATGTTGTATAAGTAGATATAGTACAGGCATCGACCTGTAATTAGTACCATGTTGTATAAGTAGATATAGTACAGGTATCAACCTGTAATTAGTACCATGTTGTATAAGTAGATACCGTACAGGTATCAACCTGTAATTAGTACCATGTTGTATAAGTAGATATAGTACAGGTATCAACCTGTAATTAGTACCATGTTGTATAAGTAGATACCGTACAGGTATCAACCTGTAATTAGTACCATGTTGTATAAGTAGATATAGTACAGGCATCGACCTGTAATTAGTACCATGTTGTATAAGTAGATACCGTACAGGCATCGACCTGTAATTAGTACCATGTTGTATAAGTAGATACCATACAGGTATCAACCTGTAATTAGTACCATGTTGTATAAGTAGATACTGTACAGGCATCGACCTGTAATTAGTACCATGTTGTATAAGTAGATACCGTACAGGCATCGACCTGTAATTAGTACCATGTTGTATAAGTAGATACCGTACAGGTATCAACCTGTAATTAGTACCATGTTGTATAAGTAGATACCATACAGGTATCAACCTGTAATTAGTACCATGTTGTATAAGTAGATACCGTACAGGTATCAACCTGTAATTAGTACCATGTTGTATAAGTAGATACCATACAGGTATCAACCTGTAATTAGTACCATGTTGTATAAGTAGATACCATACAGGCATCAACCTGTAATTAGTACCATGTTGTATAAGTAGATACCGTACAGGTATCAACCTGTAATTAGTACCATGTTGTATAAGTAGATACCGTACAGGTATCAACCTGTAATTAGTACCATGTTGTATAAGTAGATACCGTACAGGTATCAACCTGTAATTAGTACCATGTTGTGCTATATGGAAAGCAGTTCCATCCTTCAAGGAAGCTTGAATGAAAATGCACTACCTGATAATGGGGGCCACTTATAATCATGTGAATATATTTGGATTTCTATGAAACGCTGTTACAAACCAAACTGTCTATTTAATATTCAGAAGTCATCATGACTTTAGATTTTCCACCCATTTTCTCTACAGTACAGTTCATTTTTTGAGTCAAATTAAAACTGTTGATAATTAAAGtttttgtaaatgtt
>TU254001
GTACCATGTTGTATAAGTAGATACCGTACAGGTATCAACCTGTAATTAGTACCATGTTGTATAAGTAGATATAGTACAGGCATCGACCTGTAATTAGTACCATGTTGTATAAGTAGATACCGTACAGGCATCGACCTGTAATTAGTACCATGTTGTATAAGTAGATACCATACAGGTATCAACCTGTAATTAGTACCATGTTGTATAAGTAGATACTGTACAGGCATCGACCTGTAATTAGTACCATGTTGTATAAGTAGATACCGTACAGGCATCGACCTGTAATTAGTACCATGTTGTATAAGTAGATACCGTACAGGTATCAACCTGTAATTAGTACCATGTTGTGCTATATGGAAAGCAGTTCCATCCTTCAAGGAAGCTTGAATGAAAATGCACTACCTGATAATGGGGGCCACTTATAATCATGTGAATATATTTGGATTTCTATGAAACGCTGTTACAAACCAAACTGTCTATTTAATATTCAGAAGTCATCATGACTTTAGATTTTCCACCCATTTTCTCTACAGTACAG

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007155 cell adhesion biological_process
GO:0008305 integrin complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968013.1 False 6398 mRNA 0.47 30 8988084 9050862
TU254001 True 538 lncRNA 0.44 2 8988138 8989011

Neighbor

gene id symbol gene type direction distance location
LOC110520856 LOC106591015 coding downstream 5801 8973956 ~ 8982283 (-)
LOC100136250 LOC100136250 coding downstream 38905 8938820 ~ 8949179 (-)
LOC110520883 LOC100136250 coding downstream 67026 8912439 ~ 8921058 (-)
LOC110520884 LOC100136250 coding downstream 100431 8878988 ~ 8887653 (-)
LOC110516769 LOC100136250 coding downstream 125853 8853815 ~ 8862231 (-)
LOC110501040 LOC106605812 coding upstream 50563 9101425 ~ 9118437 (-)
LOC110500119 LOC105018975 coding upstream 71360 9122222 ~ 9150991 (-)
LOC110508553 LOC105018974 coding upstream 110121 9160983 ~ 9231958 (-)
LOC110508538 LOC106594717 coding upstream 182587 9233449 ~ 9333337 (-)
LOC118945333 NA coding upstream 268784 9319354 ~ 9389195 (-)
G222412 NA non-coding downstream 247 8985644 ~ 8987837 (-)
G222066 NA non-coding downstream 15749 8971476 ~ 8972335 (-)
G222064 NA non-coding downstream 24101 8963752 ~ 8963983 (-)
G222059 NA non-coding downstream 34406 8953424 ~ 8953678 (-)
G222025 NA non-coding downstream 75774 8852960 ~ 8912310 (-)
G222442 NA non-coding upstream 532 9051394 ~ 9051608 (-)
G222448 NA non-coding upstream 6080 9056942 ~ 9057573 (-)
G222451 NA non-coding upstream 13698 9064560 ~ 9064848 (-)
G222453 NA non-coding upstream 17971 9068833 ~ 9069221 (-)
G222435 NA non-coding upstream 21074 9071936 ~ 9072618 (-)
G222023 LOC100136250 other downstream 38897 8853817 ~ 8949187 (-)
LOC110520835 ash1l other downstream 167017 8804651 ~ 8839679 (-)
G221986 NA other downstream 224200 8763119 ~ 8763884 (-)
G221807 adar other downstream 464876 8503184 ~ 8523208 (-)
G221806 NA other downstream 577275 8394361 ~ 8410809 (-)
G222465 NA other upstream 42318 9093180 ~ 9095216 (-)
G222607 LOC106574954 other upstream 443934 9494796 ~ 9496853 (-)
LOC110508584 LOC104949237 other upstream 480312 9528874 ~ 9551643 (-)
LOC110520821 LOC106574299 other upstream 510883 9559133 ~ 9594654 (-)

Expression


Co-expression Network