LOC110500119 (LOC105018975)


Basic Information

Item Value
gene id LOC110500119
gene name LOC105018975
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9122222 ~ 9150991 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968074.1
ATCACGCCTCTgtcagcaaatcaaatcaaatgttatttgtcacatgcgccgaatacaacaggtgtagtagaccttacagtgaaatgcttactttcaagcccttaaccaacaatgcagctttAAGAAAATCCCCCAAaagtATGGTGTCCAGTCTGAGCGAGTGGTTCTGGAATGAGCGGCTGTGGTTCCCTGAGGGGCTGGGTTGGGCTGACCTGGAGGACAAAGATGGCCGTGTTTACGCCAAGGCCAGCGACCTTTGGGTGGTGCTACCCATCGCCCTAGCCTTCCTCGTAATACGACAGATCTTCGAGAGgTTAGTGGCCACCCCACTGGCTGCTGTCATGGGGGTGAAGGAGAAAGTTCGGCTCATAGTCTCACACAACCCCACACTGGAGTCCTTCTACTGTAACGCAACCAAGAACCCCTCACAGaGTTCTATAGACAGTCTGTGTAAGCAGACAGGTTGTTCAGAGAGACAGGTGCAGAGATGGTTCAGGAGACGCAGGAACCAGGACCGACCCAGTCTACTGAAGAAGTTCAAAGaggccagTTGGAGATTCACCTTTTACCTTCTTGCTTTCATTGCTGGCCTGGCTGCCCTCATTGACaaaCCCTGGCTGTATGACTTTAAGGAGATGTGGCAGGGCTTCCCTATTCTGACTCTCCTGCCGTCTCAGTATTGGTACTATATGATAGAGCTGGGTTTCTACGTCTCTCTAATCTTCAGTGTGGCATCAGACGTCAAACGGAAAGACTTTAAGGAGCAGATGGTTCACCATATGGCCACCATCTTCCTCATCAGTTTCTCCTGGTGTGTCAACTACATCAGAGCGGGCACGCTCATCATGCTGCTGCACGACTCCTCCGACTATTTACTGGAGtCCGCTAAGATATTCATCTATGCTGGATGGAGAAACACCAGTAACTACGTCTTCTTCCTCTTCGCTGCCGTCTTCATCTTCACTAGACTCTATATCTTCCCCTTCTAcatcATTTATTCTACGTACATTTATCCAATGACTATGTACTCTCCGTTCTTTGGATACTACTTCCTGAATTTCCTTATGATGGTGCTGCAGTGTCTCCATATCTTCTGGGCCATCCTCATTCTGCGTATGGCCGTCCGCTTCCTGAGCAGCGATGAAAAGGTGGAGGACGAGAGGAGCGATAAAGAAGAGACAGACGAgtcaggggaggaagaggagggggtggagaagaAAGGTGCGGTGCAGAATGGTCACGCCGCTCACAACAACCACCGCAAGACGGAGTAATGAAAACGTGTGCCAGGAAGTAAGAGTGTGAAGAATTCACATCCCTCACTCAGCagagtgggagagatggagggaaggggaaagggagg
>XM_036968084.1
TGCTCTGTGGCTCTGTTTTGTAGCAGGGAAGATCCCCGTATCTGTGCTGTTGTGgttaactctgcctagaagactcACCTATACAAGAATCAACTGCCTAAAACACAtATGGTGTCCAGTCTGAGCGAGTGGTTCTGGAATGAGCGGCTGTGGTTCCCTGAGGGGCTGGGTTGGGCTGACCTGGAGGACAAAGATGGCCGTGTTTACGCCAAGGCCAGCGACCTTTGGGTGGTGCTACCCATCGCCCTAGCCTTCCTCGTAATACGACAGATCTTCGAGAGgTTAGTGGCCACCCCACTGGCTGCTGTCATGGGGGTGAAGGAGAAAGTTCGGCTCATAGTCTCACACAACCCCACACTGGAGTCCTTCTACTGTAACGCAACCAAGAACCCCTCACAGaGTTCTATAGACAGTCTGTGTAAGCAGACAGGTTGTTCAGAGAGACAGGTGCAGAGATGGTTCAGGAGACGCAGGAACCAGGACCGACCCAGTCTACTGAAGAAGTTCAAAGaggccagTTGGAGATTCACCTTTTACCTTCTTGCTTTCATTGCTGGCCTGGCTGCCCTCATTGACaaaCCCTGGCTGTATGACTTTAAGGAGATGTGGCAGGGCTTCCCTATTCTGACTCTCCTGCCGTCTCAGTATTGGTACTATATGATAGAGCTGGGTTTCTACGTCTCTCTAATCTTCAGTGTGGCATCAGACGTCAAACGGAAAGACTTTAAGGAGCAGATGGTTCACCATATGGCCACCATCTTCCTCATCAGTTTCTCCTGGTGTGTCAACTACATCAGAGCGGGCACGCTCATCATGCTGCTGCACGACTCCTCCGACTATTTACTGGAGtCCGCTAAGATATTCATCTATGCTGGATGGAGAAACACCAGTAACTACGTCTTCTTCCTCTTCGCTGCCGTCTTCATCTTCACTAGACTCTATATCTTCCCCTTCTAcatcATTTATTCTACGTACATTTATCCAATGACTATGTACTCTCCGTTCTTTGGATACTACTTCCTGAATTTCCTTATGATGGTGCTGCAGTGTCTCCATATCTTCTGGGCCATCCTCATTCTGCGTATGGCCGTCCGCTTCCTGAGCAGCGATGAAAAGGTGGAGGACGAGAGGAGCGATAAAGAAGAGACAGACGAgtcaggggaggaagaggagggggtggagaagaAAGGTGCGGTGCAGAATGGTCACGCCGCTCACAACAACCACCGCAAGACGGAGTAATGAAAACGTGTGCC
>XM_036968088.1
TCCGTCTGATTGGCTCAGAAAAATGGCCAGAGTCCGGTCACATGATCCTGTCAGCCAATAGGAAGGGGAGTTGGGCTTCTGTCAGGAAAAATGCTGTAGCAGGCTGGATCCTCTGGCTGACCTGAAAAAtATGGTGTCCAGTCTGAGCGAGTGGTTCTGGAATGAGCGGCTGTGGTTCCCTGAGGGGCTGGGTTGGGCTGACCTGGAGGACAAAGATGGCCGTGTTTACGCCAAGGCCAGCGACCTTTGGGTGGTGCTACCCATCGCCCTAGCCTTCCTCGTAATACGACAGATCTTCGAGAGgTTAGTGGCCACCCCACTGGCTGCTGTCATGGGGGTGAAGGAGAAAGTTCGGCTCATAGTCTCACACAACCCCACACTGGAGTCCTTCTACTGTAACGCAACCAAGAACCCCTCACAGaGTTCTATAGACAGTCTGTGTAAGCAGACAGGTTGTTCAGAGAGACAGGTGCAGAGATGGTTCAGGAGACGCAGGAACCAGGACCGACCCAGTCTACTGAAGAAGTTCAAAGaggccagTTGGAGATTCACCTTTTACCTTCTTGCTTTCATTGCTGGCCTGGCTGCCCTCATTGACaaaCCCTGGCTGTATGACTTTAAGGAGATGTGGCAGGGCTTCCCTATTCTGACTCTCCTGCCGTCTCAGTATTGGTACTATATGATAGAGCTGGGTTTCTACGTCTCTCTAATCTTCAGTGTGGCATCAGACGTCAAACGGAAAGACTTTAAGGAGCAGATGGTTCACCATATGGCCACCATCTTCCTCATCAGTTTCTCCTGGTGTGTCAACTACATCAGAGCGGGCACGCTCATCATGCTGCTGCACGACTCCTCCGACTATTTACTGGAGtCCGCTAAGATATTCATCTATGCTGGATGGAGAAACACCAGTAACTACGTCTTCTTCCTCTTCGCTGCCGTCTTCATCTTCACTAGACTCTATATCTTCCCCTTCTAcatcATTTATTCTACGTACATTTATCCAATGACTATGTACTCTCCGTTCTTTGGATACTACTTCCTGAATTTCCTTATGATGGTGCTGCAGTGTCTCCATATCTTCTGGGCCATCCTCATTCTGCGTATGGCCGTCCGCTTCCTGAGCAGCGATGAAAAGGTGGAGGACGAGAGGAGCGATAAAGAAGAGACAGACGAgtcaggggaggaagaggagggggtggagaagaAAGGTGCGGTGCAGAATGGTCACGCCGCTCACAACAACCACCGCAAGACGGAGTAATGAAAACGTGTGCC
>XM_036968081.1
TCTTCCTCACAGTTATTTTCTATTTCACTCCTAGTCTCACCCCTCTCGCGGTCCGTTCTCCAGACGCAGCAGCTCGGCTGGTCTACGCCTATTACCGGTCAACCACCCTATCCcccagagagaagagaaagaataCATGGGACACAACGAAAGATAAATTATCCTAGCTTGTAGTTTAGATTTATCCAGGACAATCAGAGCGGATATCCATCGACACAGAAAGAAACCCCGCCTTTACTCGTCTCGCGGTCTCTCAACTTCTCCCACCTACTCTTTCTTTTTATCTCAATCCTTCTTTCTATTAAAATCGTTTTTGACTGGATGGAAAGATGTGGATAAACGGCGGAAGTGGTCAGGTCGAACCCTAATCTAAAACAACGAGACACCCGGGCCGTCACGAACGCAGCAGGTAGAATATATTCAACAGGACGGAGCTATACTTTCTCTGGTTGGACTGATTTTCTGCTCAGCGGTCGAACTTTCTGAAAATTGCATATAGGCTACCGCTATCTGTTCCGTGTGCTCTAACCCAAAGTCTCATACATCGCCTTGGACCTCAGTGAGAGGGGATTGGGACCAAAtATGGTGTCCAGTCTGAGCGAGTGGTTCTGGAATGAGCGGCTGTGGTTCCCTGAGGGGCTGGGTTGGGCTGACCTGGAGGACAAAGATGGCCGTGTTTACGCCAAGGCCAGCGACCTTTGGGTGGTGCTACCCATCGCCCTAGCCTTCCTCGTAATACGACAGATCTTCGAGAGgTTAGTGGCCACCCCACTGGCTGCTGTCATGGGGGTGAAGGAGAAAGTTCGGCTCATAGTCTCACACAACCCCACACTGGAGTCCTTCTACTGTAACGCAACCAAGAACCCCTCACAGaGTTCTATAGACAGTCTGTGTAAGCAGACAGGTTGTTCAGAGAGACAGGTGCAGAGATGGTTCAGGAGACGCAGGAACCAGGACCGACCCAGTCTACTGAAGAAGTTCAAAGaggccagTTGGAGATTCACCTTTTACCTTCTTGCTTTCATTGCTGGCCTGGCTGCCCTCATTGACaaaCCCTGGCTGTATGACTTTAAGGAGATGTGGCAGGGCTTCCCTATTCTGACTCTCCTGCCGTCTCAGTATTGGTACTATATGATAGAGCTGGGTTTCTACGTCTCTCTAATCTTCAGTGTGGCATCAGACGTCAAACGGAAAGACTTTAAGGAGCAGATGGTTCACCATATGGCCACCATCTTCCTCATCAGTTTCTCCTGGTGTGTCAACTACATCAGAGCGGGCACGCTCATCATGCTGCTGCACGACTCCTCCGACTATTTACTGGAGtCCGCTAAGATATTCATCTATGCTGGATGGAGAAACACCAGTAACTACGTCTTCTTCCTCTTCGCTGCCGTCTTCATCTTCACTAGACTCTATATCTTCCCCTTCTAcatcATTTATTCTACGTACATTTATCCAATGACTATGTACTCTCCGTTCTTTGGATACTACTTCCTGAATTTCCTTATGATGGTGCTGCAGTGTCTCCATATCTTCTGGGCCATCCTCATTCTGCGTATGGCCGTCCGCTTCCTGAGCAGCGATGAAAAGGTGGAGGACGAGAGGAGCGATAAAGAAGAGACAGACGAgtcaggggaggaagaggagggggtggagaagaAAGGTGCGGTGCAGAATGGTCACGCCGCTCACAACAACCACCGCAAGACGGAGTAATGAAAACGTGTGCC

Function

NR:

description
ceramide synthase 2-like

GO: NA

KEGG:

id description
K24621 CERS2_4, LASS2_4; very-long-chain ceramide synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968074.1 False 1363 mRNA 0.50 11 9122222 9149197
XM_036968084.1 False 1256 mRNA 0.50 11 9122297 9146453
XM_036968088.1 False 1278 mRNA 0.51 11 9122297 9146864
XM_036968081.1 True 1730 mRNA 0.49 11 9122297 9150991

Neighbor

gene id symbol gene type direction distance location
LOC110501040 LOC106605812 coding downstream 3785 9101425 ~ 9118437 (-)
LOC110520814 LOC106595728 coding downstream 71360 8988084 ~ 9050862 (-)
LOC110520856 LOC106591015 coding downstream 139939 8973956 ~ 8982283 (-)
LOC100136250 LOC100136250 coding downstream 173043 8938820 ~ 8949179 (-)
LOC110520883 LOC100136250 coding downstream 201164 8912439 ~ 8921058 (-)
LOC110508553 LOC105018974 coding upstream 9992 9160983 ~ 9231958 (-)
LOC110508538 LOC106594717 coding upstream 82458 9233449 ~ 9333337 (-)
LOC118945333 NA coding upstream 168655 9319354 ~ 9389195 (-)
LOC110520816 LOC100380759 coding upstream 196160 9347151 ~ 9371934 (-)
rprd2b LOC106605802 coding upstream 225508 9376499 ~ 9390272 (-)
G222423 NA non-coding downstream 893 9118840 ~ 9121329 (-)
G222467 NA non-coding downstream 14386 9107510 ~ 9107836 (-)
G222425 NA non-coding downstream 23224 9097963 ~ 9098998 (-)
G222464 NA non-coding downstream 29100 9092358 ~ 9093122 (-)
G222455 NA non-coding downstream 48396 9073608 ~ 9073826 (-)
G222437 NA non-coding upstream 11168 9162159 ~ 9163737 (-)
G222482 NA non-coding upstream 25885 9176876 ~ 9219368 (-)
G222498 NA non-coding upstream 76250 9227241 ~ 9227503 (-)
G222500 NA non-coding upstream 78453 9229444 ~ 9230327 (-)
G222517 NA non-coding upstream 95062 9246053 ~ 9247523 (-)
G222465 NA other downstream 27006 9093180 ~ 9095216 (-)
G222023 LOC100136250 other downstream 173035 8853817 ~ 8949187 (-)
LOC110520835 ash1l other downstream 301155 8804651 ~ 8839679 (-)
G221986 NA other downstream 358338 8763119 ~ 8763884 (-)
G222607 LOC106574954 other upstream 343805 9494796 ~ 9496853 (-)
LOC110508584 LOC104949237 other upstream 380183 9528874 ~ 9551643 (-)
LOC110520821 LOC106574299 other upstream 410754 9559133 ~ 9594654 (-)
G222662 NA other upstream 466634 9617625 ~ 9622934 (-)
LOC118944443 LOC106573533 other upstream 521452 9665862 ~ 9673439 (-)

Expression


Co-expression Network