LOC110520816 (LOC100380759)


Basic Information

Item Value
gene id LOC110520816
gene name LOC100380759
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9347151 ~ 9371934 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968149.1
TTCTTCACCATCTACTTCATTCTTCCGGTATTATGGCCGCTTGCAGTGTAAGGGACAACGAGTGTGAAATGTTATGATTGTGGAAAGTTTTCGGTGAAACCGGTGGATTAAGGATGCTCTTGACCGTGATGTTACGGTTTCCCGTCTGTCGGCCGTCAGTTCGGGCAGTGCTTCACTGTCAGAGGCACTTTAGCAAGATACAGGCATCCCCTGCTTTGTCTGAGCGCGTGCGGGTCTTTGAGTCTCtcagagagaggcagggacagCAGAGCACAAGCGGCGCCACGAAACAGGCCTTCAGCGTCCGATTGGCTGATGGCAGGACGGTGAATGGCACCACAGGCGTGACCACGCCCTCAATCATCGCTCAGAACTCATGTGTGAAAGGTGCTCTGGTCTGCAGGGTGAATGGAGAGCTGTGGGAGCTGCTTCGCCCCCTGGAGGCTGACTGTGAACTACAGCTGCTAGGCTTCAACACCACAGAGGGCAAACAGGCGGTGTGGAGGACAGGAGCGTGTGTTGTGGGGTGGGTGTTAGAGAGGGTGTTTGGGGTGGAAGTGTGCAGAGAGGGCGTGTCAGAGTCCGGTCTCTACTGTGACCACCTCCTGGAGAACAGTGCCCTGTCCCTATCTGAGCTAGAGGAGAGATGTAAGGAGGCCGCTGGCCAGAAGCTTCCTCTCTCCAGACTGGAGCTGAACAGGCAGGAAGTTACAGAGCTCTTCCAGGACAATGCTCTGAGACTCCAGTTGATTGAAGAACAGATGAGTGGTCCTACTGTCACAGTCTACAGGTGTGGAGACAGCATAGGAGTCTGCAATGGTCCTCTCCTCCCTAACACTGGTCTCCTCAAGGTCTTCAAGATGCtgcagGTGTCTCCCGTAACGTTGACCAATCCTGTTGGCACGTCAGGCGTGATGCGTGTGATGGGTGTGGCCTtcccaggagagagggagagggaggagtgggagagggaacAGGAGGAGACACGGAAGAGGGACCACAGACGCATCGGCAAGGACCAGGAGCTGTTCTTCTTTAATGACGTCAGTCCTGGAAGCTGCTTCTTCCTGCCTAAAGGAGCTCACATCTACAACACACTCGCTGACTTTATCAAGACTGAGTACAGGAGGCGTGGCTTCCATGAGGTTGTGACCCCTACTCTATACAGCACTGCACTGTGGGAGCGTTCGGGTCACTGGGAACactacagtgaaaacatgtttactgTGACCGGTGACACACACACCTATGCACTCAAACCCATGAACTGTCCAGCAcactgtctgaTGTTTGAGCAGCGTGTAAGGTCATGGAGGGAGCTCCCGTTGCGTTGGGCCGATTTTGGGGCACTGCATCGGAACGAGCTGTCCGGCGCTCTGGGTGGTCTCACCCGGGTCCGCAGGTTCTGCCAGGACGACGCACACATCTTCTGCACTCCtgagcagttGGAGGAGGAGATCATAGCGTGTTTGGACTTTGTGAGGAGTGTGTATCGAGTTTTTGGATTCTCCTTCCACTGTCTCCTCTCCACCCGACCTACACCCTGCCTGGGGGAGCCTGCACTGTGGGACCATGCTGAGcagCAGTTGGAGAGGAGTCTGCAGCAGTTTGGAGAGCGCTGGCAGTTCAACCCAGGAGATGGAGCGTTCTACGGGCCGAAGATTGACATCCAGATCAAGGACGCCATTGGTCGACAGCACCAGTGTGCCACCATCCAATTGGACTTCCAGCTACCAATCAGATTTGACCTGCAGTATGTGGGgggggatggagagacccACAGACCAGTGATGGTCCACAGAGCTGTTCTGGGATCACTGGAACGCATGATCGCTATATTGGCTGAGAATTTTTCAGGGAAATGGCCTCTGTGGTTGTCTCCAGCGCAGGTCATGATTATTCCTGTAGGGGGAGGTAGTGAGTCGTATGCACAACAGGTGGTCCGACAGTTCCGCGAGGCTGGCTTCATGGCTGACGCGGATGATGACCATGGTGCCACCTTAAATAAGAAGATCCGCTCTGCACAGCTGGCCCAGTACAACTACATATTTGtggtaGGTGAGAAGGAGTGTGTGAGTGGCACGGTGAGTGTAAGGACCAGAGGGGGGAAGCAGCTAGGGAGGAGACCGACAGAGAAGGTCCTGGCATCACTCACACACCTACGAGACGCACGGAGCAACCAGGATGacttctaacacacacacctgttgtgGATGAAGAATTGCTGACTGTACTTTTGTAATAAAATATAATAACTTAAATGTTTAAA
>TU254119
ccctaccccttTCTCATCACATCTTTCTCacttccctcaccctctctctcccttgctctctttcaccctttctctcgctctcaggggggatggagagacccACAGACCAGTGATGGTCCACAGAGCTGTTCTGGGATCACTGGAACGCATGATCGCTATATTGGCTGAGAATTTTTCAGGGAAATGGCCTCTGTGGTTGTCTCCAGCGCAGGTCATGATTATTCCTGTAGGGGGAGGTAGTGAGTCGTATGCACAACAGGTCAGGACTCATAATATCAGATCTGGGGCCATatgtatcaagtgtctcagagtagaagtgctgatttagggtcagttttgcattttggATCTCAATTCTTAAGATTAAATGAAAAGGAAgaacctggtcctagatcagcactcctgctctgaGACACATTATACACATGTCCCTTGTACTGCAGGCTGAAatcaacccccccctcccccccatacACTCACACACGCGACCAAACACAACATGACTCAGCACACATCAAAAGCTGTACCCCTCAATGACTCCAGAGGTCGAAGGCTAATCCAACACTGTACCCATACACGGTTCATGACTCTGAAAAGGACTTGATTTGAGGTTAATTTTGATCaggttttcatttatttaacacATGGGAACCAACAATGAAACAAAGGTAGGTACGTACATGCCACTACTCACATATCAATATATTCTACAAGTTCCATCTGCCACATGATTAATGAGCCAGCAGCAGGTAAGACCAGACACGGGAGATAACATGGAATATAGACATGTAATGTTTCTGAGGCCTTCATCAGGACACGGCTCCTGTTTCTGTCAATACATCCTCCTGTATGTAATGCGCATGTAGCCCCAGGGGAGGAGAATCTATCAACACTGCTGATCTGGGGTCTGTCATGATGATACATAGACAGGTAATACAGCCACCAGTGTCTCGGCCCTCATGGTGGATTTTAAAAGGTGCCGTCCTTACTGGTATTCTACCGTAGCCTGGTTCCTGTCTCCTCTACCACCACTGTGAGTGATGTGTGTTTTGCTCTTGTTAAGGTGGTCCGACAGTTCCGCGAGGCTGGCTTCATGGCTGACGCGGATGATGACCATGGTGCCACCTTAAATAAGAAGATCCGCTCTGCACAGCTGGCCCAGTACAACTACATATTTGtggtaGGTGAGAAGGAGTGTGTGAGTGGCACGGTGAGTGTAAGGACCAGAGGGGGGAAGCAGCTAGGGAGGAGACCGACAGAGAAGGTCCTGGCATCACTCACACACCTACGAGACGCACGGAGCAACCAGGATGacttctaacacacacacctgttgtgGATGAAGAATTGCT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968149.1 False 2269 mRNA 0.54 18 9347151 9371934
TU254119 True 1352 lncRNA 0.48 3 9347194 9348772

Neighbor

gene id symbol gene type direction distance location
LOC110508538 LOC106594717 coding downstream 13814 9233449 ~ 9333337 (-)
LOC118945333 NA coding downstream 24783 9319354 ~ 9389195 (-)
LOC110508553 LOC105018974 coding downstream 115193 9160983 ~ 9231958 (-)
LOC110500119 LOC105018975 coding downstream 196160 9122222 ~ 9150991 (-)
LOC110501040 LOC106605812 coding downstream 228714 9101425 ~ 9118437 (-)
rprd2b LOC106605802 coding upstream 4565 9376499 ~ 9390272 (-)
LOC110508575 prpf3 coding upstream 18353 9390287 ~ 9401122 (-)
LOC110508582 LOC106575046 coding upstream 74330 9446264 ~ 9451249 (-)
LOC110508594 LOC106605789 coding upstream 143974 9515908 ~ 9525313 (-)
LOC110508584 LOC104949237 coding upstream 156940 9528874 ~ 9551643 (-)
G222547 NA non-coding downstream 27828 9317833 ~ 9319323 (-)
G222545 NA non-coding downstream 30630 9316153 ~ 9316521 (-)
G222540 NA non-coding downstream 39672 9307226 ~ 9307479 (-)
G222539 NA non-coding downstream 40407 9306429 ~ 9306744 (-)
G222538 NA non-coding downstream 41230 9305714 ~ 9305921 (-)
G222573 NA non-coding upstream 29689 9401623 ~ 9401866 (-)
G222574 NA non-coding upstream 30203 9402137 ~ 9402559 (-)
G222576 NA non-coding upstream 32733 9404667 ~ 9404887 (-)
G222579 NA non-coding upstream 34442 9406376 ~ 9406682 (-)
G222582 NA non-coding upstream 39543 9411477 ~ 9411703 (-)
G222465 NA other downstream 251935 9093180 ~ 9095216 (-)
G222023 LOC100136250 other downstream 397964 8853817 ~ 8949187 (-)
LOC110520835 ash1l other downstream 526084 8804651 ~ 8839679 (-)
G221986 NA other downstream 583267 8763119 ~ 8763884 (-)
G222607 LOC106574954 other upstream 122862 9494796 ~ 9496853 (-)
LOC110520821 LOC106574299 other upstream 189811 9559133 ~ 9594654 (-)
G222662 NA other upstream 245691 9617625 ~ 9622934 (-)
LOC118944443 LOC106573533 other upstream 300509 9665862 ~ 9673439 (-)

Expression


Co-expression Network