LOC110508575 (prpf3)


Basic Information

Item Value
gene id LOC110508575
gene name prpf3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9390287 ~ 9401122 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589177.2
CGTGTTTCCGCTTCCGGGTTCTGAATTCAGAACGTCGTGTGAACGCCGCGCTAACAGAAAGTTTGTTCACAGCGGCTTGGATTTATTATGTATTTCAATCTTTTAATATTAATGTTTTAGAATATAATTGATATAAGAGGATATATTTACCTGGTAAGGACGAAATCGTCTGGTTGACGATGTCTCTTCCTAAACGGGAGGTGGAGGAGCTACGGCCCTGGGTGGAACGGACCGTGAAGAAGGTGCTGGGGTTCTCTGAGCCTACTGTCGTTACTGCGGCCCTGCACTGTGTAGGCAAGGGCCTGGAcaagaggaagaccacagACCAGCTGCGTCCATTCCTGGATGAGTCTGCCGGTGGGTTCGTGGAGAGACTATTTGAGGCCCTGGAGGAGAGCCGCAATTCCCGTGGGAACAAGGGTGCTGGGGAGAGGAACCGCAAGAGAGACCTGAAGGATGTGTTTGGTGATGAGGTGGAGGTGGGTGCGAGGCGGGATGTCCCCGAGGCAGGAGATGGTGTGCCGGTGAAGAGGAAACGTGTCCCCCGCTTCGAGGAGGTGGAGGAACCAGAGGTCGTACCTGCACCCCCTACTGAGAGCCCTGTCATGCTCACTAAGATAcagaTCAAACAGATGATGGAGGCTGCCACCAgacagatagaggagaggaagaaacagCTGAGCTTCGTCCCAGTGTCTTCCCAGCAGAGGCTGCCCCTGCCCACTCCCCAGCCAGACCCCCCCTTCGCCTCTCATCTTCTCCCCGctccctctgccccctcctcGGGCTCGGCCCAGTCCATCGCTCCCTCCCAGGCAGCTACTTTCATGAACGATGCCATCGAGAAGGCTAGGAAGGCTGCAGAGCTGCAGGCCCGCATCCAGTCGCAGTTAGCCATGAAGCCTGGTATACTGGGAGCCATTGGGAACACTGGAGGACCTCATAACCTGGTGGCGCTGGCCAACCTACACGCCATGGGGATAGCACCACCgAAGGTGGCGGAGGCCCGTGAGTCAAACAAGCCGGCCCCTCTGATTCTTGATGATATGGGTCGGACCGTGGATGCCAGCGGCAACGAGGTGGAGCTAACACACCGCATGCCCACCCTCAAAGCTAATATCCGTGCGGTGAAGAGGGAGCAGTTCCGACAGCAGTTGAAGGAGAAGCCTGGCGAGGACCTGGAGTCCACTATCTACTTTGACGGGCGTGTTAACATAGCACCCGCCCAGCGAGCCAAGAAGGGCTTCAAGTTCCATGAGCAGGGACGCTTTGAGAAGATCGCCCAGAGGATCAGAACTAAGGCCCAGTTGGAGAAGCTGCAGACAGAGATCGCCCAGGCAGCCAAGAAAACTGGGATCCAGGCCTCCACCAAGCTGGCCCTCTTTGCCCCCAAGAAGATGCTGGGGGACGGGCAGGTACCCATCATTGAGTGGTGGGACTCGTACATCCTCCCCTCCAACATTGACCTATCCACAGAGACCAATTTTGTGGCGATGGAGTTGTTTGGAGTCACAAACCTGGTGGAGCACCCTGCTCAGATCAGCCCCCCAGtggacaCAGACAAGCCAGGAGTGACTCTGGGAGTGTACCTGACTAAGAAGGAACAGAAGAAGCTGAGGAGACAGACTCGcagggagggacagaaagagcTTCAGGAGAAGGTCCGACTGGGGCTCATGCCCCCCCCAGAACCTAAAGTGCGCATCTCTAACCTGATGAGAGTGCTGGGTACAGAGGCAGTACAGGATCCCACTAAGGTAGAGGCCCACGTCAGAGCACAGATGGCCAAGAGACAGAAGGCCCATGAGGAGGCAAATGCAGCCCGGAAGCTCACAACCGAGCAGAGAAAAGAGAAGAAGGTGAAGAAGCTGAAAGAGGACCTGAGTCTTGGAGTTCACATCTCAGTCTATAGGATCCGTAACCTCCACAACCCGGCTAAGAAGTTTAAGGTGGAAGCTAACGCCAACCAGCTGTACCTGACTGGCACCGTGGTGCTACACCGAGACGTcaacatggtggtggtggagggagGTCCCAAAGCCCAGAAGAAGTTCAAGAGGCTCATGTTGAGCAGAATCAAATGGGAAGAACACAACTCCAAGAGAGATGATCCAGATGCAGACGATGAGACCAAGAAGAACAACAGATGCAGCCTGGTCTGGGAGggcACGGCTAAGGAGCGTAACTACGGGGAGATGAAGTTTAAGCAGTGTCCTACAGAGAACATGGCTAGAGAACACTTTAAGAAGCATGGGACAGAACACTACTGGGACCTGGCTCTGAGCCAGAGTGTGCTGGAGAGCACTGATGACTGAAGGGAGAGCATCACTAGAGCTGAGGAGGATCCCTTACCACTGACCCAGGGTCCGATAGTTGTTCATCCTCAtaatggttagggttgggagTTATCTGATCCTGGATCAGTGGTGAAGCGCATTGTTACCTCGTGCACCAGAGACATGCAAAGGTCAGGGGTGATTCTACCCCTCTTACAGATACATTCACAACCCCCAACCCAGCCTTGTATGGCTGACTGCCTGCCTGTTATTGTGTGGTGACTTGActtgagacagggagggagactgattgggagtgagtgaatgaaagGAAGTGCTGTTTAGTGAATGGATGAGGGCGAGGTCGTAGATTAGGAGGGATATATGGTGTGTGAATAGATATTATTGAGCGAGGTGTACACTGTTCTGCAATCACATTTTGTGGAAGAGTTGATAACTGTGAGACCATCTTTCTAGCAGTTAGGGTGTCATTCAggctgtgtgtcagtgtttaATACTATGTCTGACATCTCTCCACTGTGTGAGTGTTCTATAGCTTGCTATTGGCTTCTCTACCTGACTACAGTTCCTGAGTAAGCCCAGCTGTGGTCCAAATACAGTTCTGAAATATTGCCGCAATGTACTATTCCCAAGCAAAAGCCCTGTTTCTAATAAACAAAAACCAACCTATCAATGTAGAAGTAACTAAAGACTTTGATACGTATGAGATCGTACATTTGACAATGGTTTGTGTTATGTTTTTGGCCTTTTATTGTATTTTTAAAGAAAATTGCTACAATTGTGGAATGACCACATTTAGTCAAGTATTGACTGACCCAAAATGGTTTTATTTTCTTTAGATGTTTGTTTTGGATAAAGTGTCTTCCCTGAATGTTTGATCCTGTATATGTTGCCAATAAACACATGCAGGACAATA

Function

symbol description
prpf3 Acts upstream of or within retina development in camera-type eye. Predicted to be located in nucleus. Predicted to be part of U4/U6 x U5 tri-snRNP complex. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 18. Orthologous to human PRPF3 (pre-mRNA processing factor 3).

NR:

description
U4/U6 small nuclear ribonucleoprotein Prp3-like

GO: NA

KEGG:

id description
K12843 PRPF3, PRP3; U4/U6 small nuclear ribonucleoprotein PRP3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589177.2 True 3213 mRNA 0.52 17 9390287 9401122
Loading

Neighbor

gene id symbol gene type direction distance location
rprd2b LOC106605802 coding downstream 15 9376499 ~ 9390272 (-)
LOC110520816 LOC100380759 coding downstream 18353 9347151 ~ 9371934 (-)
LOC110508538 LOC106594717 coding downstream 56950 9233449 ~ 9333337 (-)
LOC118945333 NA coding downstream 67919 9319354 ~ 9389195 (-)
LOC110508553 LOC105018974 coding downstream 158329 9160983 ~ 9231958 (-)
LOC110508582 LOC106575046 coding upstream 45142 9446264 ~ 9451249 (-)
LOC110508594 LOC106605789 coding upstream 114786 9515908 ~ 9525313 (-)
LOC110508584 LOC104949237 coding upstream 127752 9528874 ~ 9551643 (-)
LOC110520821 LOC106574299 coding upstream 158011 9559133 ~ 9594654 (-)
LOC110536519 LOC106573729 coding upstream 202079 9603201 ~ 9641233 (-)
G222547 NA non-coding downstream 70964 9317833 ~ 9319323 (-)
G222545 NA non-coding downstream 73766 9316153 ~ 9316521 (-)
G222540 NA non-coding downstream 82808 9307226 ~ 9307479 (-)
G222573 NA non-coding upstream 501 9401623 ~ 9401866 (-)
G222574 NA non-coding upstream 1015 9402137 ~ 9402559 (-)
G222576 NA non-coding upstream 3545 9404667 ~ 9404887 (-)
G222579 NA non-coding upstream 5254 9406376 ~ 9406682 (-)
G222582 NA non-coding upstream 10355 9411477 ~ 9411703 (-)
LOC110501040 LOC106605812 other downstream 271914 9101425 ~ 9118437 (-)
G222465 NA other downstream 295071 9093180 ~ 9095216 (-)
G222023 LOC100136250 other downstream 441100 8853817 ~ 8949187 (-)
LOC110520835 ash1l other downstream 569220 8804651 ~ 8839679 (-)
G221986 NA other downstream 626403 8763119 ~ 8763884 (-)
G222607 LOC106574954 other upstream 93674 9494796 ~ 9496853 (-)
G222662 NA other upstream 216503 9617625 ~ 9622934 (-)
LOC118944443 LOC106573533 other upstream 271321 9665862 ~ 9673439 (-)

Expression

LOC110508575(prpf3) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 60.
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LOC110508575(prpf3) Expression in each Bioproject

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LOC110508575(prpf3) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network