LOC110508582 (LOC106575046)


Basic Information

Item Value
gene id LOC110508582
gene name LOC106575046
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9446264 ~ 9451249 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589190.2
CCGTGGAGATAGAAAGAACTAGCAAAGAGGCACACCAATGAAGGTCCGGTGATCGCGAGAGGAAGGAGACTGCCGACCTGATGTTCCAACGAGTGTGAGACAAATATCGCCAAGTGGGTTACAGAGATAGACGTTATCAAGGCCGTTTCTGGCAACCGTGGCCTGTTCTACTGCTGTTATTTTGTTGCAATATTTCAGTGATGCAATCACAGGGCAGCACTTCCTCCCAGCCCTCTGTTGATTCACTGAGCTCCAGTGACAGCTACCTGTTCAACCACTCTGAGCAGGCGGAGGATGACACTGATGTCTTCCTGTCTGAACGCTCCCCCGCCGTCATCCTCGGCACTGGGGGCATGGTCAGGGGCAACGGGAGTGCCGGGGCAGAGAGTCCCGAGTCCCAGTGGGCGTGTGACGGCTTCACTGACCGCGAGGAGGAGGAGTCACAGGGTTCAGAGGTTACTGGAGGTCACCCCAGGGTCACAgctgagagacagagaacaattgagacagagagagagaagacagagggagatctGCTCTTTGCCCAGAAGtgtgCTGAGCTGCAGGGGTTTGTAAGGCCCCTACTGGAGCTGCTGAATGGACTGAAGGGGGGACGATTTGACCGTGGTCTGAGTAGTTTCCAGCAGAGTGCAGCCATGGACCGCATCCAGAGGATCGTAGGGGTCTTACGGAGACCCAGCATCGGGGAAAAGTATATGAACACTCTTCTCCAGGTGGAGACGATGCTGAAGATGTGGTTTCCACAGGTGTCCCCCTTGGCCCCACCTACTGCCCCTACCCtcttcccccctcacctctccccccgGGACAGCCCCAGCAGCACCCCCCCACACAGGCACAGAGACCAGTCGCACATCCCTGTGAAGaagcGCAGACTGAGTTGGTCAGACACAGACTCTGACACCCCTCCTCCTGTACTCTTTAAGAGGCTCAACGCCagtggaggagagaagatggggaaggaggggggagaggtccCCTATGCAACTTCAGGGGTACCCCCACACCCCCAGGACCCCACCAGCAAccaagagaatgagagaaaggaaGATGAGGACagcaaagagggagagggagagtcatCGAGCAACAAAGCGGGGCTCTGTTCTGAGCCCGGTCCCACCTCGGTCCTTGTAGTGCCCATCCTTTCTCCCTGGAAAGCAATGGAGGGGAAACAGCTGCTGCCTGTCATGCCACCTCCCACCACCAGGGGCAGTCCAGCCATGCAGGACAGCGTAATCTCTTCCACCACGCCCTTCAACAACCTCCAAAGCCAGCAGCAGCCAATCGGGTGCCAAAGCCAGCCTGTTGCCGGGAAGACTGGGAAAAAGACCGTAAAGACCTGTCAGTGTCGGGTCCAGGCTCATTCAATCACGGCAAAGCCTTTGAAAAGGGTGGAGTGTAAGAGCAGGGTTAACCCCGCCCCTTTATAGACCTGATGCACTGAGCACACTCCGCCCAGCAGGCTAGTGTGACTACGTCAACATGCTAAAGCTGCTGTGATAGGGAGAGTCAGGGGTAGAAATGGGCTGCAGTGCAAACACTATGTTtagcccctcagccctctcaCTAGCCACTctcccttgggggaatccccttTGAAACCGGATGCAGTTTGATTGCCATCTTAAGTGGAGGTCCAATTCACTAACGTTGTCCCCTCGGCTCTCAATTTAGCTCGAGGAAGCGAGTGAAGAACTTTGGTCACTTGTGGGGTTTATATGACCCACAATTCAATGCAAATTGTAGTCATGTATCATACTCCGGTGGCCGCGAATGTCACGTCACTCACCACGGCTGCATTTTCGGCCTGTCAGACAAAATGATGATtctggggcaaaaaagtatttagtcagccaccaattatgcaagttctcccacttaaaaagatgaggcctgtaattttcatcatagatacacttgaactatgacagacaaaattagaaagaa

Function

NR:

description
circadian-associated transcriptional repressor-like

GO: NA

KEGG:

id description
K21599 CIART, CHRONO, GM129; circadian-associated transcriptional repressor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589190.2 True 1971 mRNA 0.54 6 9446264 9451249

Neighbor

gene id symbol gene type direction distance location
LOC110508575 prpf3 coding downstream 45142 9390287 ~ 9401122 (-)
rprd2b LOC106605802 coding downstream 55992 9376499 ~ 9390272 (-)
LOC110520816 LOC100380759 coding downstream 74330 9347151 ~ 9371934 (-)
LOC110508538 LOC106594717 coding downstream 112927 9233449 ~ 9333337 (-)
LOC118945333 NA coding downstream 123896 9319354 ~ 9389195 (-)
LOC110508594 LOC106605789 coding upstream 64659 9515908 ~ 9525313 (-)
LOC110508584 LOC104949237 coding upstream 77625 9528874 ~ 9551643 (-)
LOC110520821 LOC106574299 coding upstream 107884 9559133 ~ 9594654 (-)
LOC110536519 LOC106573729 coding upstream 151952 9603201 ~ 9641233 (-)
cyp11b cyp11b coding upstream 190389 9641638 ~ 9653952 (-)
G222511 NA non-coding downstream 562 9445037 ~ 9445702 (-)
G222505 NA non-coding downstream 1412 9441801 ~ 9444852 (-)
G222586 NA non-coding downstream 21799 9424179 ~ 9424465 (-)
G222582 NA non-coding downstream 34561 9411477 ~ 9411703 (-)
G222579 NA non-coding downstream 39582 9406376 ~ 9406682 (-)
G222600 NA non-coding upstream 22791 9474040 ~ 9476900 (-)
G222607 LOC106574954 non-coding upstream 44577 9494796 ~ 9496853 (-)
G222657 NA non-coding upstream 143771 9595020 ~ 9595330 (-)
G222658 NA non-coding upstream 144456 9595705 ~ 9599657 (-)
G222661 NA non-coding upstream 161415 9612664 ~ 9623056 (-)
LOC110501040 LOC106605812 other downstream 327891 9101425 ~ 9118437 (-)
G222465 NA other downstream 351048 9093180 ~ 9095216 (-)
G222023 LOC100136250 other downstream 497077 8853817 ~ 8949187 (-)
LOC110520835 ash1l other downstream 625197 8804651 ~ 8839679 (-)
G221986 NA other downstream 682380 8763119 ~ 8763884 (-)
G222662 NA other upstream 166376 9617625 ~ 9622934 (-)
LOC118944443 LOC106573533 other upstream 221194 9665862 ~ 9673439 (-)

Expression


Co-expression Network