LOC110508584 (LOC104949237)


Basic Information

Item Value
gene id LOC110508584
gene name LOC104949237
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9528874 ~ 9551643 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589204.2
ATAAAACaggaagagagcgagcgagagagaaagaggtagacaTCCCCAAGGATGAACGCGTAACCCCAACTTCTCTGAACTTTGAGAGTTAAAGGTTTAAGGAGAGGTGCAGGCGGGCCTGTttgaggagagcgagggagagtagAAGGCTGTAATATAGGAAGGAAGAAGCAAGTAAGAGCGAGGAAGACTGAAGTACAAAAACACTTATGCCATGACACAGACACAGCATCGCCTCCAGTCGACGGTCCCTCTATCAGCCATGAAGGCAGGAAAGGTGGCGATGTCTCCAGGAGAGGACGGTCTGATCGGGATCCCCTTCCCAGAGCACAGCAGCGAGATTCTGTTCCGCCTCAACGCCCAGCGCAGGGCGGGGCTACTTTGTGACCTCACCCTGACCTCGCGGGGTGCCCGCTACCCTACCCACCGCTCTGTCATGGCTGCCGTCAGCCTCTACTTCCGCGGGCTGTTTGGGGCAGAGGAGGGGGCCGAGGCAGGGGGTGAggcggggggaggaggagggttcaGTGTGTGCCAGCTGGACTGTGTCGCGCCCGATGCCCTGGATGCCCTGCTGGAGTTTGCCTACACGGCCACCCTGACCATCCGCAGCTCTGGCATGAGAGACGTGTTGAGAGGAGCTCAGTTACTGGGGATCCAGTGTGTGGTTGATGCCTGTAGAGACATACTGGGGGAGACGGCAGGGGAGGTAGAgtgggagatgggggaggagagggtacaggcggagagggagagaagggtggagagtgGGATGAAGAAAGGCTCCCGGAGGAAGATAGACAGACGGAGAGTCACCAAGGTGGAGTCATCGCACCACCAGCCACTGCCTCATCGCCCCAACATTAACACACACCagcacccctccactcctcctccacacccCTCACCTGTTCAAGACGGGGCCCACTCTCATCCCTCCACCCGACCCCCCAGCCCTGAGCAGGATGAACACCCCCCCACCACGGGACAGAACGGGGAGCGGAAGCAGGGCAGGGATGCAGGGAGAGGGAGTACAGCAGTCAATGGAGGGGTGCACTGGCCTCAGGAGCGCCTCCTCGCCCCCCACCCCCCTATTCCCCTCTCAGACGACAGGCTGTCAGAAGacgaggaggagatggagggagtgggGAACGGTGGGGTGCCCAGCTTTACTTCAGCCCCCCTGGCAGAGCAAGGGGTGGCCACAGGGGCAGGAGGAGGGGGTAGGAAGAGGAAGTCTCAGACCCCCCAGCAGTGTCCTGTCTGTCAGAAGATCATCCACGGAGCAGGGAAGCTGCCCAGACACATGAGAACACACACCGGGGAGAAACCATTCGAGTGCTCTACCTGCGGGGTCCGCTTTACCAGgAATGACAAGTTGAAGATCCACATGCGTAAACACACAGGGGAGCGTCCGTACCCTTGCCCCCACTGCCCCGCCCGCTTCCTGCATTCCTACGACCTGAAGAACCACCTGTCTCTCCATAGTGGGGCACGCCCCTTCGAGTGCCCGCTCTGCCACAAGGCCTTCGCCCGTGAGGACCACCTCCAGCGCCACCGCAAGGGCCTCAGCTGCCTGGAGGTCCGTACCCGGGCACGGCCGAGGCGCGGGCCTGGGGCTGACCACGGGGAAGAGGGCAGAagggttagaggaggaggaagagggtatTCTCCAGACCAACTCGACCCGCTGGAGAATCTGGCCCTGCAGCCCCACGCCTCAGCATTCCACCCCCGTGCTGGAATTGTTAGCCTGGGggatggggctgaggctggggctggaggTCAAATGGTGTTCCAGGAGGAGGCTGACGGGGAGCAAGCTATAGCCCTCCTAGGGCCTCACAGGTTACCCTACCCTGGTCTGCTGTGGAGAGGCCTGGAGCTGGGggtgagaggggtggagggggaggaggcagGCGGGGGCCACTCTCCTGCACTTCAGCATGCAAGATGGGAtaaggaggcagaggaggaggcagaggaggatgaggaagacgggtgagaagagaggaagagaagagcgTGCATGGATGTGTatgcgtgtgcatgtgtttgtgtgcacgtaTGTGCATTTGTATatgcataagtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtcacctacAGTATGGATGGGGATCTCACTCAGGTGACTGGACCTGCTCCTTCTTACAAAGCGCTTAGAGAAAGACTAAACAGAGAATGACTAAACGATAGAGAATGACTAAACGATACAAAAAGAATAATGGAAAACGGGTtttctgatttgttattgttgtttCATGGCTCTCTGTTTTTATTTCAGTTGTCTTTTATTTCTATTTTCCAttatttctattttatttcaTGCTGTGGTTATTCTTATTAGCTGTACATAAAAATAGGCTTTATTGAGGGAATGTTTTGCACATAGATGTGCTGATGGGGATATGAGGTTCTTTTCTCTCACTATGCAAACTGAAGTCAGGAGCTGAGAAATGATGtccagatgtaaaaaaaaaaga
>XM_021589213.2
acaGTAACAGCCAGACAGGGGCAGTTATTAAACAGCACGAGCACCATAAATAGCGCGTTTAAATAAGGCGATCTATTTCAAGTGGAAATGTCCGCTGCAGCTGGCACACGCATATGCCCTCCAACGATTCTCTCCCTTTCTGTGCCAACCTCTTAGCCCCGCTGTGATCCCTCACAGACCTTCAACCTGCCCCGGGAGTCTCTATAACAACATGCCCACCTcggccctccttccctcccacctCGATACGACAGACACTGCCGCTGTCCTATCGCACCGTGGCCGACCCCTGTGCCCTGCCCACCCCAGCGGTCCCTCTCCAGCCCCGCCAGAGCCAATCCGCGGCGGGGTGTAAAGTAGGGCAAGCCGCTTCCTGGTTCAAGGAGGAGCTGCCTGGAGTTGGAATGGGCCAGCGGagtcagagaggggggagaacagCCCAGCGAGCCGGCGGTCTGCAAAGAGAGAGCCGAGGCAGGGGGATATAAACGCCGgcagagagacaagaagaggcGGATATTACAGAGAACTCCCGGATGATACGTGGTTCGTCAAAGGGACTGGTGTGAGACTTTGGACAGTGCGGAGAGAGCGGTGACCCCCGgggggagagagactggtggGAGTGAATCCAGGAAGTACAGAAGCCGGTCAGGTGGGACGCGACGAGATAACATAGGTGACACCGGCGCACAGGCTTTGTATCCCTGGAAATCTTTTGGTTCTTCTGGAGAAGAACAGAAACAGGAAGACGTGAaaaatagagagggaggaagagagcagggacCCGTCCTCCTCTGAGTTTATGGACTGGAGGTGGCGATGTCTCCAGGAGAGGACGGTCTGATCGGGATCCCCTTCCCAGAGCACAGCAGCGAGATTCTGTTCCGCCTCAACGCCCAGCGCAGGGCGGGGCTACTTTGTGACCTCACCCTGACCTCGCGGGGTGCCCGCTACCCTACCCACCGCTCTGTCATGGCTGCCGTCAGCCTCTACTTCCGCGGGCTGTTTGGGGCAGAGGAGGGGGCCGAGGCAGGGGGTGAggcggggggaggaggagggttcaGTGTGTGCCAGCTGGACTGTGTCGCGCCCGATGCCCTGGATGCCCTGCTGGAGTTTGCCTACACGGCCACCCTGACCATCCGCAGCTCTGGCATGAGAGACGTGTTGAGAGGAGCTCAGTTACTGGGGATCCAGTGTGTGGTTGATGCCTGTAGAGACATACTGGGGGAGACGGCAGGGGAGGTAGAgtgggagatgggggaggagagggtacaggcggagagggagagaagggtggagagtgGGATGAAGAAAGGCTCCCGGAGGAAGATAGACAGACGGAGAGTCACCAAGGTGGAGTCATCGCACCACCAGCCACTGCCTCATCGCCCCAACATTAACACACACCagcacccctccactcctcctccacacccCTCACCTGTTCAAGACGGGGCCCACTCTCATCCCTCCACCCGACCCCCCAGCCCTGAGCAGGATGAACACCCCCCCACCACGGGACAGAACGGGGAGCGGAAGCAGGGCAGGGATGCAGGGAGAGGGAGTACAGCAGTCAATGGAGGGGTGCACTGGCCTCAGGAGCGCCTCCTCGCCCCCCACCCCCCTATTCCCCTCTCAGACGACAGGCTGTCAGAAGacgaggaggagatggagggagtgggGAACGGTGGGGTGCCCAGCTTTACTTCAGCCCCCCTGGCAGAGCAAGGGGTGGCCACAGGGGCAGGAGGAGGGGGTAGGAAGAGGAAGTCTCAGACCCCCCAGCAGTGTCCTGTCTGTCAGAAGATCATCCACGGAGCAGGGAAGCTGCCCAGACACATGAGAACACACACCGGGGAGAAACCATTCGAGTGCTCTACCTGCGGGGTCCGCTTTACCAGgAATGACAAGTTGAAGATCCACATGCGTAAACACACAGGGGAGCGTCCGTACCCTTGCCCCCACTGCCCCGCCCGCTTCCTGCATTCCTACGACCTGAAGAACCACCTGTCTCTCCATAGTGGGGCACGCCCCTTCGAGTGCCCGCTCTGCCACAAGGCCTTCGCCCGTGAGGACCACCTCCAGCGCCACCGCAAGGGCCTCAGCTGCCTGGAGGTCCGTACCCGGGCACGGCCGAGGCGCGGGCCTGGGGCTGACCACGGGGAAGAGGGCAGAagggttagaggaggaggaagagggtatTCTCCAGACCAACTCGACCCGCTGGAGAATCTGGCCCTGCAGCCCCACGCCTCAGCATTCCACCCCCGTGCTGGAATTGTTAGCCTGGGggatggggctgaggctggggctggaggTCAAATGGTGTTCCAGGAGGAGGCTGACGGGGAGCAAGCTATAGCCCTCCTAGGGCCTCACAGGTTACCCTACCCTGGTCTGCTGTGGAGAGGCCTGGAGCTGGGggtgagaggggtggagggggaggaggcagGCGGGGGCCACTCTCCTGCACTTCAGCATGCAAGATGGGAtaaggaggcagaggaggaggcagaggaggatgaggaagacgggtgagaagagaggaagagaagagcgTGCATGGATGTGTatgcgtgtgcatgtgtttgtgtgcacgtaTGTGCATTTGTATatgcataagtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtcacctacAGTATGGATGGGGATCTCACTCAGGTGACTGGACCTGCTCCTTCTTACAAAGCGCTTAGAGAAAGACTAAACAGAGAATGACTAAACGATAGAGAATGACTAAACGATACAAAAAGAATAATGGAAAACGGGTtttctgatttgttattgttgtttCATGGCTCTCTGTTTTTATTTCAGTTGTCTTTTATTTCTATTTTCCAttatttctattttatttcaTGCTGTGGTTATTCTTATTAGCTGTACATAAAAATAGGCTTTATTGAGGGAATGTTTTGCACATAGATGTGCTGATGGGGATATGAGGTTCTTTTCTCTCACTATGCAAACTGAAGTCAGGAGCTGAGAAATGATGtccagatgtaaaaaaaaaaga
>XM_036968208.1
gtacaGTAACAGCCAGACAGGGGCAGTTATTAAACAGCACGAGCACCATAAATAGCGCGTTTAAATAAGGCGATCTATTTCAAGTGGAAATGTCCGCTGCAGCTGGCACACGCATATGCCCTCCAACGATTCTCTCCCTTTCTGTGCCAACCTCTTAGCCCCGCTGTGATCCCTCACAGACCTTCAACCTGCCCCGGGAGTCTCTATAACAACATGCCCACCTcggccctccttccctcccacctCGATACGACAGACACTGCCGCTGTCCTATCGCACCGTGGCCGACCCCTGTGCCCTGCCCACCCCAGCGGTCCCTCTCCAGCCCCGCCAGAGCCAATCCGCGGCGGGGTGTAAAGTAGGGCAAGCCGCTTCCTGGTTCAAGGAGGAGCTGCCTGGAGTTGGAATGGGCCAGCGGagtcagagaggggggagaacagCCCAGCGAGCCGGCGGTCTGCAAAGAGAGAGCCGAGGCAGGGGGATATAAACGCCGgcagagagacaagaagaggcGGATATTACAGAGAACTCCCGGATGATACGTGGTTCGTCAAAGGGACTGGTGTGAGACTTTGGACAGTGCGGAGAGAGCGGTGACCCCCGgggggagagagactggtggGAGTGAATCCAGGAAGTACAGAAGCCGGTCAGGTGGGACGCGACGAGATAACATAGGTGACACCGGCGCACAGGCTTTGTATCCCTGGAAATCTTTTGGTTCTTCTGGAGAAGAACAGAAACAGGAAGACGTGAaaaatagagagggaggaagagagcagggacCCGTCCTCCTCTGAGTTTATGGACTGGAGGTAAGAGGTGGCGATGTCTCCAGGAGAGGACGGTCTGATCGGGATCCCCTTCCCAGAGCACAGCAGCGAGATTCTGTTCCGCCTCAACGCCCAGCGCAGGGCGGGGCTACTTTGTGACCTCACCCTGACCTCGCGGGGTGCCCGCTACCCTACCCACCGCTCTGTCATGGCTGCCGTCAGCCTCTACTTCCGCGGGCTGTTTGGGGCAGAGGAGGGGGCCGAGGCAGGGGGTGAggcggggggaggaggagggttcaGTGTGTGCCAGCTGGACTGTGTCGCGCCCGATGCCCTGGATGCCCTGCTGGAGTTTGCCTACACGGCCACCCTGACCATCCGCAGCTCTGGCATGAGAGACGTGTTGAGAGGAGCTCAGTTACTGGGGATCCAGTGTGTGGTTGATGCCTGTAGAGACATACTGGGGGAGACGGCAGGGGAGGTAGAgtgggagatgggggaggagagggtacaggcggagagggagagaagggtggagagtgGGATGAAGAAAGGCTCCCGGAGGAAGATAGACAGACGGAGAGTCACCAAGGTGGAGTCATCGCACCACCAGCCACTGCCTCATCGCCCCAACATTAACACACACCagcacccctccactcctcctccacacccCTCACCTGTTCAAGACGGGGCCCACTCTCATCCCTCCACCCGACCCCCCAGCCCTGAGCAGGATGAACACCCCCCCACCACGGGACAGAACGGGGAGCGGAAGCAGGGCAGGGATGCAGGGAGAGGGAGTACAGCAGTCAATGGAGGGGTGCACTGGCCTCAGGAGCGCCTCCTCGCCCCCCACCCCCCTATTCCCCTCTCAGACGACAGGCTGTCAGAAGacgaggaggagatggagggagtgggGAACGGTGGGGTGCCCAGCTTTACTTCAGCCCCCCTGGCAGAGCAAGGGGTGGCCACAGGGGCAGGAGGAGGGGGTAGGAAGAGGAAGTCTCAGACCCCCCAGCAGTGTCCTGTCTGTCAGAAGATCATCCACGGAGCAGGGAAGCTGCCCAGACACATGAGAACACACACCGGGGAGAAACCATTCGAGTGCTCTACCTGCGGGGTCCGCTTTACCAGgAATGACAAGTTGAAGATCCACATGCGTAAACACACAGGGGAGCGTCCGTACCCTTGCCCCCACTGCCCCGCCCGCTTCCTGCATTCCTACGACCTGAAGAACCACCTGTCTCTCCATAGTGGGGCACGCCCCTTCGAGTGCCCGCTCTGCCACAAGGCCTTCGCCCGTGAGGACCACCTCCAGCGCCACCGCAAGGGCCTCAGCTGCCTGGAGGTCCGTACCCGGGCACGGCCGAGGCGCGGGCCTGGGGCTGACCACGGGGAAGAGGGCAGAagggttagaggaggaggaagagggtatTCTCCAGACCAACTCGACCCGCTGGAGAATCTGGCCCTGCAGCCCCACGCCTCAGCATTCCACCCCCGTGCTGGAATTGTTAGCCTGGGggatggggctgaggctggggctggaggTCAAATGGTGTTCCAGGAGGAGGCTGACGGGGAGCAAGCTATAGCCCTCCTAGGGCCTCACAGGTTACCCTACCCTGGTCTGCTGTGGAGAGGCCTGGAGCTGGGggtgagaggggtggagggggaggaggcagGCGGGGGCCACTCTCCTGCACTTCAGCATGCAAGATGGGAtaaggaggcagaggaggaggcagaggaggatgaggaagacgggtgagaagagaggaagagaagagcgTGCATGGATGTGTatgcgtgtgcatgtgtttgtgtgcacgtaTGTGCATTTGTATatgcataagtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtcacctacAGTATGGATGGGGATCTCACTCAGGTGACTGGACCTGCTCCTTCTTACAAAGCGCTTAGAGAAAGACTAAACAGAGAATGACTAAACGATAGAGAATGACTAAACGATACAAAAAGAATAATGGAAAACGGGTtttctgatttgttattgttgtttCATGGCTCTCTGTTTTTATTTCAGTTGTCTTTTATTTCTATTTTCCAttatttctattttatttcaTGCTGTGGTTATTCTTATTAGCTGTACATAAAAATAGGCTTTATTGAGGGAATGTTTTGCACATAGATGTGCTGATGGGGATATGAGGTTCTTTTCTCTCACTATGCAAACTGAAGTCAGGAGCTGAGAAATGATGtccagatgtaaaaaaaaaaga
>TU254262
GGAATGGGCCAGCGGagtcagagaggggggagaacagCCCAGCGAGCCGGCGGTCTGCAAAGAGAGAGCCGAGGCAGGGGGATATAAACGCCGgcagagagacaagaagaggcGGATATTACAGAGAACTCCCGGATGATACGTGGTTCGTCAAAGGGACTGGTGTGAGACTTTGGACAGTGCGGAGAGAGCGGTGACCCCCGgggggagagagactggtggGAGTGAATCCAGGAAGTACAGAAGCCGGTCAGGTGGGACGCGACGAGATAACATAGGTGACACCGGCGCACAGGCTTTGTATCCCTGGAAATCTTTTGGTTCTTCTGGAGAAGAACAGAAACAGGAAGACGTGAaaaatagagagggaggaagagagcagggacCCGTCCTCCTCTGAGTTTATGGACTGGAGGTGGCGATGTCTCCAGGAGAGGACGGTCTGATCGGGATCCCCTTCCCAGAGCACAGCAGCGAGATTCTGTTCCGCCTCAACGCCCAGCGCAGGGCGGGGCTACTTTGTGACCTCACCCTGACCTCGCGGGGTGCCCGCTACCCTACCCACCGCTCTGTCATGGCTGCCGTCAGCCTCTACTTCCGCG

Function

NR:

description
zinc finger and BTB domain-containing protein 7B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589204.2 False 2511 mRNA 0.57 3 9528874 9534145
XM_021589213.2 False 3050 mRNA 0.58 4 9528874 9551641
XM_036968208.1 False 3059 mRNA 0.58 4 9528874 9551643
TU254262 True 602 TUCP 0.43 3 9531174 9551240

Neighbor

gene id symbol gene type direction distance location
LOC110508594 LOC106605789 coding downstream 3561 9515908 ~ 9525313 (-)
LOC110508582 LOC106575046 coding downstream 77625 9446264 ~ 9451249 (-)
LOC110508575 prpf3 coding downstream 127752 9390287 ~ 9401122 (-)
rprd2b LOC106605802 coding downstream 138602 9376499 ~ 9390272 (-)
LOC110520816 LOC100380759 coding downstream 156940 9347151 ~ 9371934 (-)
LOC110520821 LOC106574299 coding upstream 7490 9559133 ~ 9594654 (-)
LOC110536519 LOC106573729 coding upstream 51558 9603201 ~ 9641233 (-)
cyp11b cyp11b coding upstream 89995 9641638 ~ 9653952 (-)
LOC118945353 LOC106594169 coding upstream 102650 9654293 ~ 9656911 (-)
LOC118944443 LOC106573533 coding upstream 114219 9665862 ~ 9673439 (-)
G222607 LOC106574954 non-coding downstream 32021 9494796 ~ 9496853 (-)
G222600 NA non-coding downstream 51974 9474040 ~ 9476900 (-)
G222511 NA non-coding downstream 83172 9445037 ~ 9445702 (-)
G222505 NA non-coding downstream 84022 9441801 ~ 9444852 (-)
G222586 NA non-coding downstream 104409 9424179 ~ 9424465 (-)
G222657 NA non-coding upstream 43377 9595020 ~ 9595330 (-)
G222658 NA non-coding upstream 44062 9595705 ~ 9599657 (-)
G222661 NA non-coding upstream 61021 9612664 ~ 9623056 (-)
G222662 NA non-coding upstream 68568 9617625 ~ 9622934 (-)
G222672 NA non-coding upstream 85606 9637249 ~ 9637907 (-)
LOC110501040 LOC106605812 other downstream 410501 9101425 ~ 9118437 (-)
G222465 NA other downstream 433658 9093180 ~ 9095216 (-)
G222023 LOC100136250 other downstream 579687 8853817 ~ 8949187 (-)
LOC110520835 ash1l other downstream 707807 8804651 ~ 8839679 (-)
LOC110534283 LOC106573819 other upstream 128265 9679758 ~ 9689081 (-)
LOC110508696 ndufa3 other upstream 449772 10001415 ~ 10002941 (-)

Expression


Co-expression Network