LOC110536529 (LOC106573824)


Basic Information

Item Value
gene id LOC110536529
gene name LOC106573824
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9688881 ~ 9692007 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622311.2
GCTTTCACTCTATGCGATATCgttcccacttcctgttttttgGGGAAAGGACCGGTGCTGTGTTGAATTTTGCTTCCCTCACACAGATTGAAGAAAATAATCATGTGCGACGCTAGGGGACGTAGTGAGCGGGACGCAGCGTCTCACCGGATGATGCAGTCCTGTGGCTGCCTGCTATCATCGTTTTCCTGCCACCCCAGTGTTGAGTACACTGGTGGTCTATCCATCATCAGAGGTTCTACTGATGCCGACTCTGACCGTGGAGCCTTCAGGACGACAGGTGTACACTGAGGACACAGTCACCTTGGCATGTCGGTTACCTGGCCACTCTGGGCTGGGCTGGCAGTTCTACTGGCACAAAGACAGGCAGGACACTGTCCCTGTGGAGCAGATGTGGGGCAGTGGTGGAGGTGGGGCAGTCTACCAACTGTGGCGtgcctctgtcacacacacaggccagTACTGGTGCAGAGCAGGGAGAGGACAGCCAGTCTTCTACACCCAATACAGCCAGGCAGTCTCTGTTAATGTCATTGAGCTCTTCACATCAGTGACTTTGTCAGCATTTCCTTCGACCGTGGTCAAAGAGGGCGGGGCTTTCAACCTCACCTGTGAGGCCCAGTTTAGCAACTGCAAGCTGAGCCAACATCATGGTAACCACAGTCTACATAGTCACCCTGATCCTGACCGTAACTGGACCACAGTGGTTGTAACATTCTCCTTCCTGCGGGACGGCTGGCCAGTGGCCAGGGACTCTGTCAGTGGGATGTACAGCGTAGCGAGGGCTTCTAGGTGTCACATGGGGACCTACAGCTGTGTGGCCAGAGCAGGCCGGGCCAGGAGGAGCAGTCAGGAGATCAGCATCACACTAGACAACCTGTCTCTGATACTGGTCACCTGCTTTGGCACCTTCCTGATCCTCTCCGTGGCTCCATTGGCATTTTTTGTGAGACTATACGCGATGAGATTATGGCAGCtcagaggcagaggacaaggATAATTGCAGTGCAAtgagtgcagtacaatacagggACCAAAATGGAGGACAGATGTATCTGGACCCAGCTGACTTGAGAAACTTTATATCGTTTATTACAAAATTGGAGTGTAGAATAATAAACATAAATTATTTGGA
>XM_036968251.1
AGGTGAGTGTTgcggatatgaaccagattcatCTCGGTTCAGGTTTCCCAAATGAAACCCCACAGCTTGGTCTACGTCTACAGACATCTTTACAAGCAGGATGCTGAGGTGATGATTGCCAGAGCCAGTGTTGAGTACACTGGTGGTCTATCCATCATCAGAGGTTCTACTGATGCCGACTCTGACCGTGGAGCCTTCAGGACGACAGGTGTACACTGAGGACACAGTCACCTTGGCATGTCGGTTACCTGGCCACTCTGGGCTGGGCTGGCAGTTCTACTGGCACAAAGACAGGCAGGACACTGTCCCTGTGGAGCAGATGTGGGGCAGTGGTGGAGGTGGGGCAGTCTACCAACTGTGGCGtgcctctgtcacacacacaggccagTACTGGTGCAGAGCAGGGAGAGGACAGCCAGTCTTCTACACCCAATACAGCCAGGCAGTCTCTGTTAATGTCATTGAGCTCTTCACATCAGTGACTTTGTCAGCATTTCCTTCGACCGTGGTCAAAGAGGGCGGGGCTTTCAACCTCACCTGTGAGGCCCAGTTTAGCAACTGCAAGCTGAGCCAACATCATGGTAACCACAGTCTACATAGTCACCCTGATCCTGACCGTAACTGGACCACAGTGGTTGTAACATTCTCCTTCCTGCGGGACGGCTGGCCAGTGGCCAGGGACTCTGTCAGTGGGATGTACAGCGTAGCGAGGGCTTCTAGGTGTCACATGGGGACCTACAGCTGTGTGGCCAGAGCAGGCCGGGCCAGGAGGAGCAGTCAGGAGATCAGCATCACACTAGACAACCTGTCTCTGATACTGGTCACCTGCTTTGGCACCTTCCTGATCCTCTCCGTGGCTCCATTGGCATTTTTTGTGAGACTATACGCGATGAGATTATGGCAGCtcagaggcagaggacaaggATAATTGCAGTGCAAtgagtgcagtacaatacagggACCAAAATGGAGGACAGATGTATCTGGACCCAGCTGACTTGAGAAACTTTATATCGTTTATTACAAAATTGGAGTGTAGAATAATAAACATAAATTATTTGGA
>XM_036968249.1
GTTGTTAGCCAGGTAAACTATGGTTGTTAGCCAGGTAAACTATGGTTGTTAGCCAGGTAAACTATGGTTGTTAGCCAGGTAAACTATGGTTGTTAGCCAGGTAAACTATGGTTGTTAGCCAGGTAAACTATGGTTGTTAGCCAGGTAAACAAACTATGGTTGTTAGGCCAGGTAAAGTATGGTTGTTGTCAGCACGTGgtgttgtctctgtgtttaaAAACAATAACATTGGCCCCATTGCAGTTTATTGCATGTGTAAAATGTATTGTTGTCAACTTTTTTTCAATATGTGTGGTCCTTTGTGGACCGTTTAATTAGCCCAACTGTTTATTGACATTTTTCAGTAAACTGATTTCCCCTCCAACTACATGTTGTTTCTTAAAACCATGTTTGCCTAGCTACCGTTGCTAACCATGATTGATCTATTTACCATGATTCACTGAATAAGCTCAGGAATGTCTCTCCTTCCTGTACTTTTGTTGAGTACACTGGTGGTCTATCCATCATCAGAGGTTCTACTGATGCCGACTCTGACCGTGGAGCCTTCAGGACGACAGGTGTACACTGAGGACACAGTCACCTTGGCATGTCGGTTACCTGGCCACTCTGGGCTGGGCTGGCAGTTCTACTGGCACAAAGACAGGCAGGACACTGTCCCTGTGGAGCAGATGTGGGGCAGTGGTGGAGGTGGGGCAGTCTACCAACTGTGGCGtgcctctgtcacacacacaggccagTACTGGTGCAGAGCAGGGAGAGGACAGCCAGTCTTCTACACCCAATACAGCCAGGCAGTCTCTGTTAATGTCATTGAGCTCTTCACATCAGTGACTTTGTCAGCATTTCCTTCGACCGTGGTCAAAGAGGGCGGGGCTTTCAACCTCACCTGTGAGGCCCAGTTTAGCAACTGCAAGCTGAGCCAACATCATGGTAACCACAGTCTACATAGTCACCCTGATCCTGACCGTAACTGGACCACAGTGGTTGTAACATTCTCCTTCCTGCGGGACGGCTGGCCAGTGGCCAGGGACTCTGTCAGTGGGATGTACAGCGTAGCGAGGGCTTCTAGGTGTCACATGGGGACCTACAGCTGTGTGGCCAGAGCAGGCCGGGCCAGGAGGAGCAGTCAGGAGATCAGCATCACACTAGACAACCTGTCTCTGATACTGGTCACCTGCTTTGGCACCTTCCTGATCCTCTCCGTGGCTCCATTGGCATTTTTTGTGAGACTATACGCGATGAGATTATGGCAGCtcagaggcagaggacaaggATAATTGCAGTGCAAtgagtgcagtacaatacagggACCAAAATGGAGGACAGATGTATCTGGACCCAGCTGACTTGAGAAACTTTATATCGTTTATTACAAAATTGGAGTGTAGAATAATAAACATAAATTATTTGGA
>TU253901
GGCAAGTCTGTGGTCAAATGCACCGTGATAACGCAACGTTCTTTCAACTCACCCGCCGTTTTGCGTTCCACTAAATGACATTAATCTTCTATTTGGTTGAATTTCTCTTTGCGTAAAAACACTAACGTTAATACGGACTCCGCCTGACTTTCAATATTGTCCAGACAGTGGAGTACTTCAAGAGCTTTCACTCTATGCGATATCgttcccacttcctgttttttgGGGAAAGGACCGGTGCTGTGTTGAATTTTGCTTCCCTCACACAGATTGAAGAAAATAATCATGTGCGACGCTAGGGGACGTAGTGAGCGGGACGCAGCGTCTCACCGGATGATGCAGTCCTGTGGCTGCCTGCTATCATCGTTTTCCTGCCACCCCAGTGTTGAGTACACTGGTGGTCTATCCATCATCAGAGGTTCTACTGATGCCGACTCTGACCGTGGAGCCTTCAGGACGACAGGTGTACACTGAGGACACAGTCACCTTGGCATGTCGGTTACCTGGCCACTCTGGGCTGGGCTGGCAGTTCTACTGGCACAAAGACAGgccagTACTGGTGCAGAGCAGGGAGAGGACAGCCAGTCTTCTACACCCAATACAGCCAGGCAGTCTCTGTTAATGTCATTGAGCTCTTCACATCAGTGACTTTGTCAGCATTTCCTTCGACCGTGGTCAAAGAGGGCGGGGCTTTCAACCTCACCTGTGAGGCCCAGTTTAGCAACTGCAAGCTGAGCCAACATCATGGTAACCACAGTCTACATAGTCACCCTGATCCTGACCGTAACTGGACCACAGTGGTTGTAACATTCTCCTTCCTGCGGGACGGCTGGCCAGTGGCCAGGGACTCTGTCAGTGGGATGTACAGCGTAGCGAGGGCTTCTAGGTGTCACATGGGGACCTACAGCTGTGTGGCCAGAGCAGGCCGGGCCAGGAGGAGCAGTCAGGAGATCAGCATCACACTAGACAACCTGTCTCTGATACTGGTCACCTGCTTTGGCACCTTCCTGATCCTCTCCGTGGCTCCATTGGCATTTTTTGTGAGACTATACGCGATGAGATTATGGCAGCtcagaggcagaggacaaggATAATTGCAGTGCAAtgagtgcagtacaatacagggACCAAAATGGAGGACAGATGTATCTGGACCCAGCTGACTTGAGAAACTTTATATCGTTTATTACAAAATTGGAGTGTAGAA

Function

NR:

description
PREDICTED: Fc receptor-like A isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622311.2 False 1135 mRNA 0.52 8 9689064 9692007
XM_036968251.1 False 1063 mRNA 0.52 8 9689262 9692007
XM_036968249.1 False 1412 mRNA 0.48 8 9689400 9692007
TU253901 True 1207 lncRNA 0.51 8 9688881 9691985

Neighbor

gene id symbol gene type direction distance location
LOC118945352 NA coding upstream 66112 9612894 ~ 9622952 (+)
LOC110520820 LOC107573682 coding upstream 180801 9490333 ~ 9508263 (+)
LOC118944441 NA coding upstream 202939 9485600 ~ 9486125 (+)
LOC110520819 LOC106575022 coding upstream 205978 9463337 ~ 9483086 (+)
LOC110520813 LOC106605815 coding upstream 701218 8982594 ~ 8987846 (+)
LOC110536497 LOC106574921 coding downstream 33368 9725375 ~ 9764307 (+)
LOC110508601 LOC105018956 coding downstream 76793 9768800 ~ 9882291 (+)
LOC110520822 LOC106605747 coding downstream 194864 9886871 ~ 9888193 (+)
LOC110508611 rpl18 coding downstream 201254 9893261 ~ 9900476 (+)
sphk2 LOC106605743 coding downstream 208802 9900809 ~ 9916529 (+)
G222354 NA non-coding upstream 5936 9681972 ~ 9683128 (+)
G222381 NA non-coding upstream 9769 9679029 ~ 9679295 (+)
G222366 NA non-coding upstream 20004 9646171 ~ 9669060 (+)
G222371 NA non-coding upstream 32051 9656420 ~ 9657013 (+)
G222388 NA non-coding downstream 10001 9702008 ~ 9702574 (+)
G222723 NA non-coding downstream 73914 9765921 ~ 9767809 (+)
G222741 NA non-coding downstream 114559 9806566 ~ 9807900 (+)
G222743 NA non-coding downstream 116032 9808039 ~ 9809141 (+)
G222746 NA non-coding downstream 130711 9822718 ~ 9824032 (+)
G222353 LOC106573525 other upstream 7312 9679760 ~ 9681752 (+)
G222345 LOC106594812 other upstream 77925 9606305 ~ 9611139 (+)
G222287 NA other upstream 243360 9445047 ~ 9445704 (+)
G222102 NA other upstream 620913 9067146 ~ 9068151 (+)
LOC110508845 LOC106605771 other downstream 582118 10267749 ~ 10276176 (+)
LOC110508886 LOC106605776 other downstream 619675 10306848 ~ 10314535 (+)
LOC110520833 LOC106575226 other downstream 1024644 10716613 ~ 10767669 (+)
cacng8b LOC106576929 other downstream 1077666 10769638 ~ 10827279 (+)

Expression


Co-expression Network