LOC110520822 (LOC106605747)


Basic Information

Item Value
gene id LOC110520822
gene name LOC106605747
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9886871 ~ 9888193 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963801.1
CCATGCTTGTTTAAGGCCCACCCCTACATCAGCAATGTGGTCGGATACACAACCCTGTTCGCATCCGCGGACCTCATACAGCAAAGCATGCTTGGAGGGAAACAGAGTGGAGGATTAAACACAGACAAGGGAACACACACCATCCATGACTCAGAGGGGGCCAAGCTTAACATGGAGGGAACCAATATTTCCACTGGTACTAAAAGTGTCACAACATGGGCTGATATTGACTGGGCCCAGACCGCTCGAGTGGCCTTTGTTGGGTTCTGTTTCCATGCCAATTTCAACTACCATTGGCTGAAGGGGCTGGAGAGGATGTTGCCAGGGGGAGGGGCCAAAAGGGTGTCAGGGAAGGTAGTGCTGGATCAACTGGTTGCTGCCCCCGCTACTATCAGTGCCTTCTTcatagGTCTTAGCGTATTAAAAAACAAAGAGGACCCATTGGAAAACTGGAGGGAGAAATTCTGGACTTCATACAAGACTGGAGTGGTCTACTGGTCAACAATGCAGgcattGAATTTCTCCCTGGTTCCCCCAGTTGCTCGTACAGTGTTTGTGGGTGGCATCACGCTGGTGTGGACAGTATTCCTGTGCCATTTCAGACAGCAGAAAGATGATACACAAAACAAACCCCCCTCTCACTGATATGGATGTTATTGGATGAGCTGTGTGATGACAAAATTGTGACAACTATTTCATTGAATAGCTTTTATGTGCTGCACGCTTATAACTTGATTAAAGTAGTTATTTTAAAGAATGTGTTTTTCATCTTTGCATGATGGCAGgcagcctagcagttaagagcgttgggccactaACTGGAAGGTCGCTGGTGCGAATCCCCGAGCCTACGAGGTGATATATCTGTTGAtatacccttgagcaaggcacttaaccctaattgctcctgtaagtcgctctgg

Function

NR:

description
PREDICTED: mpv17-like protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963801.1 True 923 mRNA 0.48 4 9886871 9888193

Neighbor

gene id symbol gene type direction distance location
LOC110508601 LOC105018956 coding upstream 4580 9768800 ~ 9882291 (+)
LOC110536497 LOC106574921 coding upstream 122564 9725375 ~ 9764307 (+)
LOC110536529 LOC106573824 coding upstream 194864 9688881 ~ 9692007 (+)
LOC118945352 NA coding upstream 263919 9612894 ~ 9622952 (+)
LOC110520820 LOC107573682 coding upstream 378608 9490333 ~ 9508263 (+)
LOC110508611 rpl18 coding downstream 5068 9893261 ~ 9900476 (+)
sphk2 LOC106605743 coding downstream 12616 9900809 ~ 9916529 (+)
LOC110508641 LOC106577286 coding downstream 38090 9926283 ~ 9933661 (+)
LOC110508650 LOC106577252 coding downstream 85765 9973761 ~ 9998774 (+)
LOC110508688 tfpt coding downstream 114693 10002886 ~ 10005885 (+)
G222758 NA non-coding upstream 26380 9860223 ~ 9860491 (+)
G222753 NA non-coding upstream 37563 9844592 ~ 9849308 (+)
G222752 NA non-coding upstream 40464 9844221 ~ 9846407 (+)
G222746 NA non-coding upstream 62839 9822718 ~ 9824032 (+)
G222743 NA non-coding upstream 77730 9808039 ~ 9809141 (+)
G222733 NA non-coding downstream 37552 9925745 ~ 9926085 (+)
G222770 NA non-coding downstream 49003 9937196 ~ 9937546 (+)
G222797 NA non-coding downstream 76461 9964654 ~ 9965260 (+)
G222799 NA non-coding downstream 79285 9967478 ~ 9967770 (+)
G222353 LOC106573525 other upstream 205119 9679760 ~ 9681752 (+)
G222345 LOC106594812 other upstream 275732 9606305 ~ 9611139 (+)
G222287 NA other upstream 441167 9445047 ~ 9445704 (+)
G222102 NA other upstream 818720 9067146 ~ 9068151 (+)
LOC110508845 LOC106605771 other downstream 385932 10267749 ~ 10276176 (+)
LOC110508886 LOC106605776 other downstream 423489 10306848 ~ 10314535 (+)
LOC110520833 LOC106575226 other downstream 828458 10716613 ~ 10767669 (+)
cacng8b LOC106576929 other downstream 881480 10769638 ~ 10827279 (+)

Expression


Co-expression Network