LOC110508611 (rpl18)


Basic Information

Item Value
gene id LOC110508611
gene name rpl18
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9893261 ~ 9900476 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589267.2
taaaatataaatataatgactTTTGGACGACGTGATGATCACACAGGAAGTAATAGCAAAACAGCCAACGAAAACGCGTGTGACCTCCGTAATCGCGGAGATGTGTTTATCGCGAGACAGCGACCCTTCCTTTTTCCTTTCCACTCTGGGTCTAAGATGGGAGTTGACATCCGACACAACAAGGACCGTAAGGTGCACCGAAAGGAGCCCAAGAGTCAGGATATCTACCTGAGGCTCCTGGTCAAGCTGTACAGATTCTTGGCCCGTCGCTCCACTGCTCCCTTCAACAAGGTGGTCCTCAGGAGGCTCTTCATGAGCAGGACCCACAGGCCTCCGATATCAGTGTCTCGCATGATCCGTAAGATGAAACTGCCTGGTCGTGAGAACCGAACCGCAGTTGTCGTGGGAACCGTCACTGATGATGTCAGAATTCAGGATATCCCCAAGCTCAAGGTGTGCGCTCTGAAGGTAACTGACGGCGCTCGCCGCAGGATCCTGAAGGCCGGAGGTCAGGTCATGACCTTTGACCAGCTAGCTCTGGCTGCCCCCAAAGGACAGGGCACCGTGCTGCTGTCAGGACCCCGTAAGGGCAGAGAGGTGTACAGGCATTTTGGAAAAGCCTGTGGAACCCCCCACAGCCACACCAAgcCCTACATTCGCTCCAAGGGCAGGAAGTTTGAGCGTGCTCGTGGGCGCAGATCCAGCCGTGGATACAAGGCCTAAAGTCTTTTTTGTTTTCCCTGGAATCTGATACAAATAAAGATAGCGATATAAAATGAA

Function

symbol description
rpl18 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome and rough endoplasmic reticulum. Predicted to be part of cytosolic large ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 18. Orthologous to human RPL18 (ribosomal protein L18).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02883 RP-L18e, RPL18; large subunit ribosomal protein L18e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589267.2 True 780 mRNA 0.52 7 9893261 9900476

Neighbor

gene id symbol gene type direction distance location
LOC110520822 LOC106605747 coding upstream 5068 9886871 ~ 9888193 (+)
LOC110508601 LOC105018956 coding upstream 10970 9768800 ~ 9882291 (+)
LOC110536497 LOC106574921 coding upstream 128954 9725375 ~ 9764307 (+)
LOC110536529 LOC106573824 coding upstream 201254 9688881 ~ 9692007 (+)
LOC118945352 NA coding upstream 270309 9612894 ~ 9622952 (+)
sphk2 LOC106605743 coding downstream 333 9900809 ~ 9916529 (+)
LOC110508641 LOC106577286 coding downstream 25807 9926283 ~ 9933661 (+)
LOC110508650 LOC106577252 coding downstream 73482 9973761 ~ 9998774 (+)
LOC110508688 tfpt coding downstream 102410 10002886 ~ 10005885 (+)
cnot3a NA coding downstream 105401 10005877 ~ 10018441 (+)
G222758 NA non-coding upstream 32770 9860223 ~ 9860491 (+)
G222753 NA non-coding upstream 43953 9844592 ~ 9849308 (+)
G222752 NA non-coding upstream 46854 9844221 ~ 9846407 (+)
G222746 NA non-coding upstream 69229 9822718 ~ 9824032 (+)
G222743 NA non-coding upstream 84120 9808039 ~ 9809141 (+)
G222733 NA non-coding downstream 25269 9925745 ~ 9926085 (+)
G222770 NA non-coding downstream 36720 9937196 ~ 9937546 (+)
G222797 NA non-coding downstream 64178 9964654 ~ 9965260 (+)
G222799 NA non-coding downstream 67002 9967478 ~ 9967770 (+)
G222353 LOC106573525 other upstream 211509 9679760 ~ 9681752 (+)
G222345 LOC106594812 other upstream 282122 9606305 ~ 9611139 (+)
LOC110520820 LOC107573682 other upstream 386475 9490333 ~ 9508263 (+)
G222287 NA other upstream 447557 9445047 ~ 9445704 (+)
G222102 NA other upstream 825110 9067146 ~ 9068151 (+)
LOC110508845 LOC106605771 other downstream 373649 10267749 ~ 10276176 (+)
LOC110508886 LOC106605776 other downstream 411206 10306848 ~ 10314535 (+)
LOC110520833 LOC106575226 other downstream 816175 10716613 ~ 10767669 (+)
cacng8b LOC106576929 other downstream 869197 10769638 ~ 10827279 (+)

Expression


Co-expression Network