LOC110508641 (LOC106577286)


Basic Information

Item Value
gene id LOC110508641
gene name LOC106577286
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9926283 ~ 9933661 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589316.2
GTTAGCGTCACTTCCTGTACCACCACCTCCTTTGTCTGTGCCCCAGGTTTCGGTACGCAAGGctggttatttatttatttcctttttatttggaggatatattttcatatatatccattACTTTTTAATTTATTGAATGACAGTCGACTCTGAAATATTTATGCCTAAAAGCAAAGCGCCAAAAATGGATGACCTGGACTACAtCCCGGTAGACCTGAGTCCAGAGGAGCGCTCTGAGCTGGAGGACATCCGTCGTAGGAAGGGAGCTCTGCTGCAGGAGATCCAGAGGCTCAGAGACGAGCTCAGAGAGGCCATCATAGAGGTGGAAGGACTGGAGACCAGCACAGAGGGCAGTAAAACTCTACAGAAGAACAGGCATGTGGCCATGGGAAGGAAGAAGTTTAACATGGACCCCAAAAAGggtATTGTGTTCCTGGTGGAGAATGAGTTGCTCAGACACACTCAAGAGGATGTTGCCCAGTTCCTGTACAAAGGAGAGGGACTCAACAAGACTGCGATAGGAGACTACCTGGGAGAGAGgGAGGACTTTAATCTCAAGGTTCTGCAGGCGTTTGTTGACCTTCACGAGTTCACTGATCTCAACCTGGTCCAGGCTCTCAGGCAGTTCCTGTGGAGTTTCCGTCTGCCTGGCGAGGCTCAGAAGATTGACAGGATGATGGAGGCCTTTGCCCAGAGATACTGTCACTGCAACCCTGGGGTCTTCCAGAGCACTGATACGTGCTATGTGCTGTCGTTTGCTATCATCATGCTGAACACCAGCCTCCACAACCCCAACGTGAGAGACAAGCCTGGATTGGACCGCTTCATCTCCATGAACAGAGGCATCAACGAGGGTGGAGACCTGCCAGAGGACCTGCtcagaAATCTTTATGACAGCATCAAGAACGAGCCCTTCAAGATCCCTGAGGATGATGGGAACGACCTGACACACACCTTCTTCAACCCCGACAGAGAGGGCTGGCTCCTCAAACTAGGAGGACGGGTGAAGACCTGGAAAAGAAGATGGTTCATTCTCACAGACAACTGCCTTTACTACTTTGAGTATACTACAGATAAGGAGCCCAGAGGTATCATTCCCCTAGAGAACCTGAGTATCCGGGAGGTTGAAGACCCCAGGAAACCTAACTGCTTTGAGCTGTACATCCCCAACAACCGTGGTCAGCTGATCAAGGCCTGTAAGACGGAGGCAGACGGCAGAGTGGTGGAGGGGAACCACAACGTGTACCGCATCTCTGCTCCCACACCTGAGGAGAAAGACGAATGGATCCACCACATCAActcTGCGGTCAGCGTGGACCCCTTCTATGAGATGCTGGCTGCCAGGAAGAAACGCATATCGTTAAAGAAGGAGGAACAACCGTAGAACattcccttcttcctctctcctcttcatctctcattCCAACTTGGGACACaagcctttctctcctccctaGATTAATTTAATTCCtcactttttttccccctctttctttctttatgaGGAGGACTTGTTGCTATCCTGTTTAAGAGACTGGCCAGCACAAACCGGCAGTTCAGGAGTTCACCACTCATCCGCTACTGTCTGCTGCTGCTAGCGGCTGCTCTGTACGCTACCACACTACAAAGTGTCCACTACTACCCTATATACTACAGTTAGTTCACTCACTCAAAGCCTCCTTCTCGTCACTacatctctccttccttcttttcCGTGAAGTTGAAGTGAACTGTGaaataaatatgtattttattCAGGGTAGCAAGCAGGACCACTGAACCGTCCATCACAAACAGGCTGCAACTCATCAGTCTGAAGTGACTTCCTCTCCATCTGTAACTGATCTAACATTGGGGCAACGGTCCAGTTCTAACCGGTCACTGTGTGAAGGACAGAATGCCCGGCGGCTGAGGAAGCCACTTTAACCTGTTAAGATGCAGCCCTAGTGGTCTGCTGTGCTTTACTCTAACATCTTGGCTCCAGGTTAGCATGTCTATATCAGCATTATCAAAGTGCCACTTTAATACTGTAGCCTCTGTGAAGGAGATGACGCTGGTCCTTACTGCTTAGACCATAAAAATGTCATTCTCATGTTAAATTTGTTATGATCAACGATCTATGGGAAATGTTCCCAGAAGAACTGACCAATAAGGCAACAATTGAGCAGTGAACACTAAAAGACGACGACTCTTGTCAATGACCACTGGCGTTTCCTTCACAAGACTGTTAATAAACTCCCTCATACAGACACGTAAACTGTTAACCCACTGTAGCGTATTATAGAATTGGGTTTTTAAGAAGTTACAACGGCAGCTTATTACAATGTATACTTCATTTTTTTGTGAATACTTGTTAGAATATTGTTTACAACATACATAGATttaatttattgtttatttttgtttgttaCATCTTTTGTTTTGTAAGAGCTACTGTAGAACTGCATGTGGAGATGAGGGTTAATCCTTCATACACACAGATGGACCAGACTCGTGTTAGTGTTGGGTGCATTTGAGAAAGAGTGTTAGTGTTCCCTGTTGACACAATAGAATCAACCTCCAATTGGAACATTTAGATTATTCAGGACAGGagagtgatgacatcacagaacATTTAGGATAGAAATGTCTAATATAGAACAGGCATGGTTCTATGTGGTATGGAACAGGGAATCCTGTCAGTTCTATACATTCTATTTCTATCGGTACTGTTGATAATGTTGCACCGTCCTGAAGGAACCTCTATTACCCTCTAAGAGCCTGAATGAATGAGGCTCACTGAAGCACAAACGTGTCCCAGACGCCTGTAATGGCTTTCTTTCCACCATAACCATCATGGATATATGAAAGGGCTGGATAGGTGTCCTTCATAATACTGATGCCCATCCAATCCTGTCAGATCTGTGACTTAAAAGAAAAGCAAGCTATGGGTGGTTATTGGGACATCACCCTATGATAAGTCTGAAACGACCTGTCTAATATGAGAACTGAAATCTGAAATGATGGTTCTGAAGTTTAATCATCAGTCAAGCCAGGAAAAGGCATCAGATTCCTCTTAATGTGATTGAATTGAAAAGGACAACAAACATGGAGCACTAATATATCTTTCAATATTATGTAATTGCtgaaatattaaaatgtattaaatgaataACAATGTTAAGGA
>XM_021589325.2
gttAGAAAAAATAATCTATCCTCTGAGCGAAGAAGCTACAAAAATCAGTGCAGCACTGATAACACGCCTAATCCATTTAGTTACTTTAGTTGAAAACATCTGAGGATTGACAGTAGCTAGAGAGAAGTGTCATTTGGAATTAATACTTTTTTTGTGCAAATTGTCCTGCATAGTTCACATATGCCGAAAGGGAGGACGTGTAAACTAATTTTTTTATGTAGATCTTATCTCTGTCCCCAACTAGTATTTGTCATGTCTAACCACTCCCGCTGTCACATTAGAGATTGTCAGGATTCCATGGAATGTTTCAGAGTGAAAGCCCTGCAGCCAGTGTTTTGGCTTATTTGATTTTAAACTTTGTTTTTCCTCTTATCTACAGTACTTCTGTTCTGTGTTGATAGGCTACTTCTGTGCAATACTAGTTGGTTTTCTGAGCTCTGTGAACTGTTCTTTATCAATGAATAGGCTGTAAGGTTGAGTGCTCCAGTATATCAAGGCTGCAATGAGACGCACGTCATCAACCGCCTGATTTTCCACACATTTCCATTTGACTAGACAACCAAAATGGAGGAATTAGGTACAGtCCCGGTAGACCTGAGTCCAGAGGAGCGCTCTGAGCTGGAGGACATCCGTCGTAGGAAGGGAGCTCTGCTGCAGGAGATCCAGAGGCTCAGAGACGAGCTCAGAGAGGCCATCATAGAGGTGGAAGGACTGGAGACCAGCACAGAGGGCAGTAAAACTCTACAGAAGAACAGGCATGTGGCCATGGGAAGGAAGAAGTTTAACATGGACCCCAAAAAGggtATTGTGTTCCTGGTGGAGAATGAGTTGCTCAGACACACTCAAGAGGATGTTGCCCAGTTCCTGTACAAAGGAGAGGGACTCAACAAGACTGCGATAGGAGACTACCTGGGAGAGAGgGAGGACTTTAATCTCAAGGTTCTGCAGGCGTTTGTTGACCTTCACGAGTTCACTGATCTCAACCTGGTCCAGGCTCTCAGGCAGTTCCTGTGGAGTTTCCGTCTGCCTGGCGAGGCTCAGAAGATTGACAGGATGATGGAGGCCTTTGCCCAGAGATACTGTCACTGCAACCCTGGGGTCTTCCAGAGCACTGATACGTGCTATGTGCTGTCGTTTGCTATCATCATGCTGAACACCAGCCTCCACAACCCCAACGTGAGAGACAAGCCTGGATTGGACCGCTTCATCTCCATGAACAGAGGCATCAACGAGGGTGGAGACCTGCCAGAGGACCTGCtcagaAATCTTTATGACAGCATCAAGAACGAGCCCTTCAAGATCCCTGAGGATGATGGGAACGACCTGACACACACCTTCTTCAACCCCGACAGAGAGGGCTGGCTCCTCAAACTAGGAGGAGGACGGGTGAAGACCTGGAAAAGAAGATGGTTCATTCTCACAGACAACTGCCTTTACTACTTTGAGTATACTACAGATAAGGAGCCCAGAGGTATCATTCCCCTAGAGAACCTGAGTATCCGGGAGGTTGAAGACCCCAGGAAACCTAACTGCTTTGAGCTGTACATCCCCAACAACCGTGGTCAGCTGATCAAGGCCTGTAAGACGGAGGCAGACGGCAGAGTGGTGGAGGGGAACCACAACGTGTACCGCATCTCTGCTCCCACACCTGAGGAGAAAGACGAATGGATCCACCACATCAActcTGCGGTCAGCGTGGACCCCTTCTATGAGATGCTGGCTGCCAGGAAGAAACGCATATCGTTAAAGAAGGAGGAACAACCGTAGAACattcccttcttcctctctcctcttcatctctcattCCAACTTGGGACACaagcctttctctcctccctaGATTAATTTAATTCCtcactttttttccccctctttctttctttatgaGGAGGACTTGTTGCTATCCTGTTTAAGAGACTGGCCAGCACAAACCGGCAGTTCAGGAGTTCACCACTCATCCGCTACTGTCTGCTGCTGCTAGCGGCTGCTCTGTACGCTACCACACTACAAAGTGTCCACTACTACCCTATATACTACAGTTAGTTCACTCACTCAAAGCCTCCTTCTCGTCACTacatctctccttccttcttttcCGTGAAGTTGAAGTGAACTGTGaaataaatatgtattttattCAGGGTAGCAAGCAGGACCACTGAACCGTCCATCACAAACAGGCTGCAACTCATCAGTCTGAAGTGACTTCCTCTCCATCTGTAACTGATCTAACATTGGGGCAACGGTCCAGTTCTAACCGGTCACTGTGTGAAGGACAGAATGCCCGGCGGCTGAGGAAGCCACTTTAACCTGTTAAGATGCAGCCCTAGTGGTCTGCTGTGCTTTACTCTAACATCTTGGCTCCAGGTTAGCATGTCTATATCAGCATTATCAAAGTGCCACTTTAATACTGTAGCCTCTGTGAAGGAGATGACGCTGGTCCTTACTGCTTAGACCATAAAAATGTCATTCTCATGTTAAATTTGTTATGATCAACGATCTATGGGAAATGTTCCCAGAAGAACTGACCAATAAGGCAACAATTGAGCAGTGAACACTAAAAGACGACGACTCTTGTCAATGACCACTGGCGTTTCCTTCACAAGACTGTTAATAAACTCCCTCATACAGACACGTAAACTGTTAACCCACTGTAGCGTATTATAGAATTGGGTTTTTAAGAAGTTACAACGGCAGCTTATTACAATGTATACTTCATTTTTTTGTGAATACTTGTTAGAATATTGTTTACAACATACATAGATttaatttattgtttatttttgtttgttaCATCTTTTGTTTTGTAAGAGCTACTGTAGAACTGCATGTGGAGATGAGGGTTAATCCTTCATACACACAGATGGACCAGACTCGTGTTAGTGTTGGGTGCATTTGAGAAAGAGTGTTAGTGTTCCCTGTTGACACAATAGAATCAACCTCCAATTGGAACATTTAGATTATTCAGGACAGGagagtgatgacatcacagaacATTTAGGATAGAAATGTCTAATATAGAACAGGCATGGTTCTATGTGGTATGGAACAGGGAATCCTGTCAGTTCTATACATTCTATTTCTATCGGTACTGTTGATAATGTTGCACCGTCCTGAAGGAACCTCTATTACCCTCTAAGAGCCTGAATGAATGAGGCTCACTGAAGCACAAACGTGTCCCAGACGCCTGTAATGGCTTTCTTTCCACCATAACCATCATGGATATATGAAAGGGCTGGATAGGTGTCCTTCATAATACTGATGCCCATCCAATCCTGTCAGATCTGTGACTTAAAAGAAAAGCAAGCTATGGGTGGTTATTGGGACATCACCCTATGATAAGTCTGAAACGACCTGTCTAATATGAGAACTGAAATCTGAAATGATGGTTCTGAAGTTTAATCATCAGTCAAGCCAGGAAAAGGCATCAGATTCCTCTTAATGTGATTGAATTGAAAAGGACAACAAACATGGAGCACTAATATATCTTTCAATATTATGTAATTGCtgaaatattaaaatgtattaaatgaataACAATGTTAAGGA

Function

NR:

description
cytohesin-2 isoform X2

GO: NA

KEGG:

id description
K18441 CYTH; cytohesin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589316.2 False 3166 mRNA 0.45 12 9926283 9933661
XM_021589325.2 True 3549 mRNA 0.44 12 9927165 9933661

Neighbor

gene id symbol gene type direction distance location
sphk2 LOC106605743 coding upstream 9754 9900809 ~ 9916529 (+)
LOC110508611 rpl18 coding upstream 25807 9893261 ~ 9900476 (+)
LOC110520822 LOC106605747 coding upstream 38090 9886871 ~ 9888193 (+)
LOC110508601 LOC105018956 coding upstream 43992 9768800 ~ 9882291 (+)
LOC110536497 LOC106574921 coding upstream 161976 9725375 ~ 9764307 (+)
LOC110508650 LOC106577252 coding downstream 40297 9973761 ~ 9998774 (+)
LOC110508688 tfpt coding downstream 69225 10002886 ~ 10005885 (+)
cnot3a NA coding downstream 72216 10005877 ~ 10018441 (+)
LOC110508764 LOC106577172 coding downstream 144384 10078045 ~ 10094991 (+)
LOC110508782 LOC106605762 coding downstream 202230 10135891 ~ 10140365 (+)
G222733 NA non-coding upstream 198 9925745 ~ 9926085 (+)
G222758 NA non-coding upstream 65792 9860223 ~ 9860491 (+)
G222753 NA non-coding upstream 76975 9844592 ~ 9849308 (+)
G222752 NA non-coding upstream 79876 9844221 ~ 9846407 (+)
G222746 NA non-coding upstream 102251 9822718 ~ 9824032 (+)
G222770 NA non-coding downstream 3535 9937196 ~ 9937546 (+)
G222797 NA non-coding downstream 30993 9964654 ~ 9965260 (+)
G222799 NA non-coding downstream 33817 9967478 ~ 9967770 (+)
G222813 NA non-coding downstream 89854 10023515 ~ 10024115 (+)
G222353 LOC106573525 other upstream 244531 9679760 ~ 9681752 (+)
G222345 LOC106594812 other upstream 315144 9606305 ~ 9611139 (+)
LOC110520820 LOC107573682 other upstream 419497 9490333 ~ 9508263 (+)
G222287 NA other upstream 480579 9445047 ~ 9445704 (+)
LOC110508845 LOC106605771 other downstream 340464 10267749 ~ 10276176 (+)
LOC110508886 LOC106605776 other downstream 378021 10306848 ~ 10314535 (+)
LOC110520833 LOC106575226 other downstream 782990 10716613 ~ 10767669 (+)
cacng8b LOC106576929 other downstream 836012 10769638 ~ 10827279 (+)
G223418 u2af2 other downstream 920041 10853702 ~ 10856200 (+)

Expression


Co-expression Network