LOC110508688 (tfpt)


Basic Information

Item Value
gene id LOC110508688
gene name tfpt
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10002886 ~ 10005885 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589410.2
GTAGTTTTGCCGGGCTGGGGAACATGGGAACTGTAGTCTACATAATGTCGTATAATTATTGCGCCAGTTACAACAATACAAAAAGGTTGTTTGACAGCGTGAAACCTGCGGTGATGCATTGAGCGCTGCAGTCAATGGATCGGATGATGGAGGATTTCTCCGGCCTGGCCCTGCCGCCTCTCTTTGGGGGCCACATCCTGGAAGCAGAGCTGGAGCCAGGTGGGGTGGAACTGGGCCCAGGGGAGGTAGAGCTTGGACCTGGGGTCAGCGAGTTGCTAGAGGGTAGAGGTCAAGGGTCAGGAGCAAGGCcagagcagcagcaggaggagaggagagaattggAGAAGAGGAAGTACCTGGCTTTGATCAAGAGGTGTAAGGAGATCGAACAGGTGAATGAGAAGATCCTTGGTCGCCTTCACCAGGTACAAAGACTAACACGTCAcatgaagaaagagagaagGTTCCTAATGAAGACCCTCGATGCCCATGGAGATGACTATAGAAATGCACAGCTCACCATATCGCTTGAGGAAGAGTCTGGTGCCCATTTAGACATTGGCCCTGGAGCAGAAGATGATAGGCTGAATGACCTTCCTAgctcctccccctctgtcccttTCCAATCCACAGTGGGATCCAAGAAGAAGAGGCATCGAGTTCTAAAACAGGAGAAAGACCCACAGACTGAAGCAGACCTCTCCGTGTTGGCAGAGACGCAGTTCAGTGACTTTCCCAGCCCAACCGCTTTGTCTCACTGACCAGGGGAATGGCCGGCTGCTAGTGGGAGGAGAAATGAGGCAGCATTCTGTTGCTTGGACTCCCACTTCCCCAGATGTGATGTCACTGAAACACATACAGCCAGGGCTCTTGGGGATGTTCTGAAAGTTGTATTGAGCTTGAGTGCTGAAATGATGGAATAGGATGAAGCTACACCTGATCTAAGGTTCTATGCGGATGCTGTCTACAGAACCTTGCAGATAGAAATGAAAAACGTAGTGGATATGATTATCATTTAAGCACGACTATGATCTGTGGAAATGGCTGAAGGTCTTGACCATGGTAATCCACCCATTCTGATCGAGTAGAGAATGGATGGTCCGGTCCTTGCGGAAGTTACATTGACAGTACATTTATTGATGTGAACCTTTTATCAGGATACTCTGGACATGTTTTATGATTGTTTGTTGACTTGATGCTTACTAAATGTTCCGTATAAAATGTTTATTCAGAA
>XM_036968376.1
TAGTTAGTCGTAAATCTTCAAAAATGCTGCGCATGTTAGATGCTTTTCAGTAACGCCGTTAGCAAGttaggctaacattagctagtcgAATGTGTTGTCATCTCGGTTTAATCGTTTTCAAGAGAAGCTCATGTTAACGAGTTGTGATTTCGTTAACCAAATCAAAGATGATGGAGGATTTCTCCGGCCTGGCCCTGCCGCCTCTCTTTGGGGGCCACATCCTGGAAGCAGAGCTGGAGCCAGGTGGGGTGGAACTGGGCCCAGGGGAGGTAGAGCTTGGACCTGGGGTCAGCGAGTTGCTAGAGGGTAGAGGTCAAGGGTCAGGAGCAAGGCcagagcagcagcaggaggagaggagagaattggAGAAGAGGAAGTACCTGGCTTTGATCAAGAGGTGTAAGGAGATCGAACAGGTGAATGAGAAGATCCTTGGTCGCCTTCACCAGGTACAAAGACTAACACGTCAcatgaagaaagagagaagGTTCCTAATGAAGACCCTCGATGCCCATGGAGATGACTATAGAAATGCACAGCTCACCATATCGCTTGAGGAAGAGTCTGGTGCCCATTTAGACATTGGCCCTGGAGCAGAAGATGATAGGCTGAATGACCTTCCTAgctcctccccctctgtcccttTCCAATCCACAGTGGGATCCAAGAAGAAGAGGCATCGAGTTCTAAAACAGGAGAAAGACCCACAGACTGAAGCAGACCTCTCCGTGTTGGCAGAGACGCAGTTCAGTGACTTTCCCAGCCCAACCGCTTTGTCTCACTGACCAGGGGAATGGCCGGCTGCTAGTGGGAGGAGAAATGAGGCAGCATTCTGTTGCTTGGACTCCCACTTCCCCAGATGTGATGTCACTGAAACACATACAGCCAGGGCTCTTGGGGATGTTCTGAAAGTTGTATTGAGCTTGAGTGCTGAAATGATGGAATAGGATGAAGCTACACCTGATCTAAGGTTCTATGCGGATGCTGTCTACAGAACCTTGCAGATAGAAATGAAAAACGTAGTGGATATGATTATCATTTAAGCACGACTATGATCTGTGGAAATGGCTGAAGGTCTTGACCATGGTAATCCACCCATTCTGATCGAGTAGAGAATGGATGGTCCGGTCCTTGCGGAAGTTACATTGACAGTACATTTATTGATGTGAACCTTTTATCAGGATACTCTGGACATGTTTTATGATTGTTTGTTGACTTGATGCTTACTAAATGTTCCGTATAAAATGTTTATTCAGAA

Function

symbol description
tfpt Predicted to act upstream of or within apoptotic process. Orthologous to human TFPT (TCF3 fusion partner).

NR:

description
TCF3 fusion partner homolog

GO: NA

KEGG:

id description
K11670 TEPT, INO80F; TCF3 fusion partner

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589410.2 False 1234 mRNA 0.49 7 10002886 10005885
XM_036968376.1 True 1258 mRNA 0.47 7 10003071 10005885

Neighbor

gene id symbol gene type direction distance location
LOC110508650 LOC106577252 coding upstream 9459 9973761 ~ 9998774 (+)
LOC110508641 LOC106577286 coding upstream 69225 9926283 ~ 9933661 (+)
sphk2 LOC106605743 coding upstream 86357 9900809 ~ 9916529 (+)
LOC110508611 rpl18 coding upstream 102410 9893261 ~ 9900476 (+)
LOC110520822 LOC106605747 coding upstream 114693 9886871 ~ 9888193 (+)
LOC110508764 LOC106577172 coding downstream 72160 10078045 ~ 10094991 (+)
LOC110508782 LOC106605762 coding downstream 130006 10135891 ~ 10140365 (+)
LOC110508830 LOC106592928 coding downstream 174553 10180438 ~ 10226836 (+)
LOC110508838 ube2s coding downstream 227267 10233152 ~ 10239964 (+)
LOC110508861 NA coding downstream 239443 10245328 ~ 10266902 (+)
G222799 NA non-coding upstream 35116 9967478 ~ 9967770 (+)
G222797 NA non-coding upstream 37626 9964654 ~ 9965260 (+)
G222770 NA non-coding upstream 65340 9937196 ~ 9937546 (+)
G222733 NA non-coding upstream 76801 9925745 ~ 9926085 (+)
G222813 NA non-coding downstream 17630 10023515 ~ 10024115 (+)
G222815 NA non-coding downstream 18584 10024469 ~ 10024854 (+)
G222838 NA non-coding downstream 67657 10073542 ~ 10073772 (+)
G222839 NA non-coding downstream 67985 10073870 ~ 10074374 (+)
G222805 rps9 non-coding downstream 68840 10074725 ~ 10075966 (+)
G222353 LOC106573525 other upstream 321134 9679760 ~ 9681752 (+)
G222345 LOC106594812 other upstream 391747 9606305 ~ 9611139 (+)
LOC110520820 LOC107573682 other upstream 496100 9490333 ~ 9508263 (+)
G222287 NA other upstream 557182 9445047 ~ 9445704 (+)
LOC110508845 LOC106605771 other downstream 268240 10267749 ~ 10276176 (+)
LOC110508886 LOC106605776 other downstream 305797 10306848 ~ 10314535 (+)
LOC110520833 LOC106575226 other downstream 710766 10716613 ~ 10767669 (+)
cacng8b LOC106576929 other downstream 763788 10769638 ~ 10827279 (+)
G223418 u2af2 other downstream 847817 10853702 ~ 10856200 (+)

Expression


Co-expression Network