LOC110508724 (prpf31)


Basic Information

Item Value
gene id LOC110508724
gene name prpf31
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10019313 ~ 10024005 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968375.1
TGACCACCCATTGGATTATTTATGGTGATGCCTTTCGTCTGCGACTCCCTATAGAGGCGACGTTGATAGCATAAGCAAACATTTTTAACGTCTAACACATTTCGAAAGTTGTTGGATTTGTAGGGTTTCTTTTGACGGTAGGAGTTTGGAACTCCGAAGATGTCTCTGGCGGATGAGCTCCTGGCTGATCTGGAGGAGGCGGGGGATGAGGGGGAGGATGGGCTGTAcccgggggaagagggggagagtgatggggaggcaggggagggacATGTAGAGGGAGGTTTGGAGGACATTCCAGAGGAGATGGAGGTGGACTACAGCGGAGCTGAGAGTGTCTCGTCCATCGCTAAACTACGCAACAGCAAAcagTTCTCAGAGATCATGGACAAAATTGCAATCTATGTCGAGAAGCAGCGCAAgaactctgaagTCTCCGGTCCGGTGGAGGCAGACCCAGAATACAAGCTCATCGTTGCTGCCAATAACCTCACAGTAGAAATTGAGAACGAACTGAACATCATTCACAAGTTTGTACGTGACAAGTATTCTAAGAGGTTCCCTGAGTTGGAGTCCCTGGTGCCCAACTCTCTGGATTACGTCCGCACTGTCAAGGAGCTGGGGAACAACCTGGACAAGTGTAAGAACAACGAGAATCTGCAGCAGATCCTGACCAACGCCACCATCATGGTGGTCAGCGTCACAGCCTCCACCACACAGGGGACGATGCTGGGTGAGGATGAACTGAAGAGGTTGGAGGAGGCCTGTGACATGGCGCTAGAGCTGAACCAATCAAAACACAGGATCTATGAATATGTGGAGTCCAGGATGTCGTTCATTGCTCCTAATCTGTCAGTCATCGTTGGAGCCTCGACCGCAGCCAAGATCATGGGTATTGCTGGGGGCCTGACCAACCTGTCTAAGATGCCAGCCTGTAACCTGATGCTACTGGGAACCCAGAAGAGGACCCTGTCAGGGTTCAGCAGCACCGCTGTGCTCCCACACACCGGCTACATCTACCACTGTGATGTGGTCCAGACTCTACCCCCGGACCTGAGGAGAAAGGCAGCACGCCTGGTTTCAGCTAAGTGCACCCTGGCATCCCGAGTGGACAGCTTCCACGAGAGTGCAGACGGCAAGGTGGGCTATGACCTGAAAGAGGAGATTGAGAAGAAGTTTGATAAATGGCAGGAGCCTCCACCAGTGAAGACTGTCAAACCCCTGCCAGCACCGTTGGAcggacagaggaagaagagaggagggcgGAGGTATCGTAAGATGAAGGAGCGTCTGGGTCTGACAGAGATCAGGAAACATGCCAACAGGATGACCTTCGCAGAGatTGAGGATGATGCGTACCAGGAGGACCTGGGTTTCAGTCTGGGCCAGCTGGGGAAGTCTGGCAGCGGACGCGTCAGACAGGCTCAGGTCAACGAGGCCACCAAGGCCCGGATATCCAAGTCCCTACAGAGGAAGCTGCAGAAGCAGAACATGACATACGGCGGCAGGTCCACAGTTGGCGGCAGGTCCACAGTTGGCAGCAGGTCCACAGTCGGTGGGAGGTCCACAGTTGGCGGGAGGTCCTCGGTCAGAGACAACTCCTCAGGAACAAGTTCCAGCGTAGCCTTCACTCCACTACAGGGACTGGAGATCGTGAACCCGCATGCAGCAGAGAAGAAGGTGGCTGAGGCCAACCAGAAATACTTCTCCAACATGGCAGAGTTCCTCAAGGtcaagaaggagggagagggaaagtgaGGAGTACACATACAATTTATCATACACATCCACACATAGACTTACACACAGGAGAGACTGATATACAGACATACCAACTTGTATTTCAAAATGAATGCAGATGGAGTGAAATGCATTCACACTGACTGATTGATCAGGTGTCATTGCATAACCATGGGGAGAAGATCGACCATGACAGTGAAGAACATATATTTAGATTGTATATTTGTTTTAGAGCATGTTGTGCTTTTTTTCTTACGTTTTGACTCCATTTTGTTCCATTTTAATAAAATTAAACTAATACTT
>TU254793
ggggagggacATGTAGAGGGAGGTTTGGAGGACATTCCAGAGGAGATGGAGGTGGACTACAGCGGAGCTGAGAGTGTCTCGTCCATCGCTAAACTACGCAACAGCAAAcagTTCTCAGAGATCATGGACAAAATTGCAATCTATGTCGAGAAGCAGCGCAAgaactctgaagTCTCCGGTCCGGTGGAGGCAGACCCAGAATACAAGCTCATCGTTGCTGCCAATAACCTCACAGTAGAAATTGAGAACGAACTGAACATCATTCACAAGTTTGTACGTGACAAGTATTCTAAGAGGTTCCCTGAGTTGGAGTCCCTGGTGCCCAACTCTCTGGATTACGTCCGCACTGTCAAGGAGCTGGGGAACAACCTGGACAAGTGTAAGAACAACGAGAATCTGCAGCAGATCCTGACCAACGCCACCATCATGGTGGTCAGCGTCACAGCCTCCACCACACAGGGGACGATGCTGGGTGAGGATGAACTGAAGAGGTTGGAGGAGGCCTGTGACATGGCGCTAGAGCTGAACCAATCAAAACACAGGATCTATGAATATGTGGAGTCCAGGATGTCGTTCATTGCTCCTAATCTGTCAGTCATCGTTGGAGCCTCGACCGCAGCCAAGATCATGGGTATTGCTGGGGGCCTGACCAACCTGTCTAAGATGCCAGCCTGTAACCTGATGCTACTGGGAACCCAGAAGAGGACCCTGTCAGGGTTCAGCAGCACCGCTGTGCTCCCACACACCGGCTACATCTACCACTGTGATGTGGTCCAGACTCTACCCCCGGACCTGAGGAGAAAGGCAGCACGCCTGGTTTCAGCTAAGTGCACCCTGGCATCCCGAGTGGACAGCTTCCACGAGAGTGCAGACGGCAAGGTGAGAACTGGAAGAGGGA
>TU254794
GGAGGTTTGGAGGACATTCCAGAGGAGATGGAGGTGGACTACAGCGGAGCTGAGAGTGTCTCGTCCATCGCTAAACTACGCAACAGCAAAcagTTCTCAGAGATCATGGACAAAATTGCAATCTATGTCGAGAAGCAGCGCAAgaactctgaagTCTCCGGTCCGGTGGAGGCAGACCCAGAATACAAGCTCATCGTTGCTGCCAATAACCTCACAGTAGAAATTGAGAACGAACTGAACATCATTCACAAGTTTGTACGTGACAAGTATTCTAAGAGGTTCCCTGAGTTGGAGTCCCTGGTGCCCAACTCTCTGGATTACGTCCGCACTGTCAAGGAGCTGGGGAACAACCTGGACAAGTGTAAGAACAACGAGAATCTGCAGCAGATCCTGACCAACGCCACCATCATGGTGGTCAGCGTCACAGCCTCCACCACACAGGGGACGATGCTGGGTGAGGATGAACTGAAGAGGTTGGAGGAGGCCTGTGACATGGCGCTAGAGCTGAACCAATCAAAACACAGGATCTATGAATATGTGGAGTCCAGGATGTCGTTCATTGCTCCTAATCTGTCAGTCATCGTTGGAGCCTCGACCGCAGCCAAGATCATGGGTATTGCTGGGGGCCTGACCAACCTGTCTAAGATGCCAGCCTGTAACCTGATGCTACTGGGAACCCAGAAGAGGACCCTGTCAGGGTTCAGCAGCACCGCTGTGCTCCCACACACCGGCTACATCTACCACTGTGATGTGGTCCAGACTCTACCCCCGGACCTGAGGAGAAAGGCAGCACGCCTGGTTTCAGCTAAGTGCACCCTGGCATCCCGAGTGGACAGCTTCCACGAGAGTGCAGACGGCAAGGTGAGAACTGGAAGAGGGA

Function

symbol description
prpf31 Predicted to enable U4atac snRNA binding activity. Acts upstream of or within mRNA splicing, via spliceosome and retina development in camera-type eye. Predicted to be located in nucleus. Predicted to be part of nucleus. Is expressed in retina and retinal neural layer. Used to study retinitis pigmentosa. Human ortholog(s) of this gene implicated in retinitis pigmentosa 11. Orthologous to human PRPF31 (pre-mRNA processing factor 31).

NR:

description
U4/U6 small nuclear ribonucleoprotein Prp31

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968375.1 False 2043 mRNA 0.51 13 10019313 10024005
TU254793 False 898 TUCP 0.44 8 10020648 10023203
TU254794 True 880 TUCP 0.53 8 10020648 10023185

Neighbor

gene id symbol gene type direction distance location
LOC110508696 ndufa3 coding downstream 16372 10001415 ~ 10002941 (-)
LOC110508630 LOC106605751 coding downstream 59281 9943081 ~ 9960032 (-)
LOC110536579 LOC106593149 coding downstream 306125 9708802 ~ 9713188 (-)
LOC110534283 LOC106573819 coding downstream 330232 9679758 ~ 9689081 (-)
LOC118944443 LOC106573533 coding downstream 345925 9665862 ~ 9673439 (-)
LOC110520824 lmtk3 coding upstream 443 10024448 ~ 10047484 (-)
LOC110508742 LOC106577219 coding upstream 23630 10047635 ~ 10053368 (-)
tmc4 LOC106577196 coding upstream 29530 10053535 ~ 10062470 (-)
mboat7 mboat7 coding upstream 39112 10063117 ~ 10072855 (-)
rps9 rps9 coding upstream 50720 10074725 ~ 10077392 (-)
G223058 NA non-coding downstream 19937 9998968 ~ 9999376 (-)
G223047 NA non-coding downstream 20551 9973761 ~ 9998762 (-)
G223043 NA non-coding downstream 23837 9969605 ~ 9995476 (-)
G223052 NA non-coding downstream 32191 9980349 ~ 9987122 (-)
G223081 NA non-coding upstream 62847 10086852 ~ 10089362 (-)
LOC110520825 LOC106605761 non-coding upstream 75456 10099437 ~ 10128902 (-)
G223112 NA non-coding upstream 119304 10143309 ~ 10143823 (-)
G223115 NA non-coding upstream 129340 10153345 ~ 10153706 (-)
G223070 NA other downstream 4421 10012961 ~ 10014892 (-)
G222662 NA other downstream 396379 9617625 ~ 9622934 (-)
znf628 LOC106605829 other upstream 1046941 11068525 ~ 11079570 (-)
G223942 LOC106576860 other upstream 1148115 11172120 ~ 11174367 (-)
G223969 LOC106605840 other upstream 1251912 11275917 ~ 11278628 (-)
LOC110509576 LOC106576947 other upstream 1703357 11727284 ~ 11741584 (-)
G224869 NA other upstream 1728846 11752851 ~ 11753680 (-)

Expression


Co-expression Network