LOC110508790 (grwd1)


Basic Information

Item Value
gene id LOC110508790
gene name grwd1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10144533 ~ 10151145 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589618.2
GACAAACCACGTGATCAATCCACCGGAAGTAAGCAAAGCCTGGCCCCTCTCAAAATGTCGGCGCCCAGGGGAGACATGCTTCCGAACGAAGATGGAGAGGTGGATGAAATGGAAGGGGGTGGCAGCGACGAAGACGAAATGGAAGAAGAGGGAAAGGATGGAGAACAGGAAACTCAAGTTTATGTCCCCGGAAAACAGCCTCTCCAACCCGGAGAGGAGCTCGAGATGGACCGCTCGGCTTACCGCATGTACCACGAGTGTCAGACAGGTGCTCCTTGCCTGAGCTTCGACGTGTTGAGAGATGCGAATGGAGACGGCAGGGAACAGTATCCCCTCTCTATGCTGCTCTGTGCAGGCACACAGGCTGACGCTGCCCTCAGCAACAGACTGCTTCTCATACGCATGCACAACCTCCACGGTACTACAGAGAAAGTGAAGGAGggggatgagagcagtgatggagagagtgatgaagaggatgatgatgaagataaGAAGCCACAGATGGAGTTGGCCATGATGCCTCACTACGGAGGGATCAACAGAGTCCGAGTGACACATCGTGGAGATCAGTCATTGGCTGCTGTCTGGTCAGAGAAAGGTCAGGTGGAGATATTTGACCTCAGATCCCAGATGGAAGCCGTCTACAGTTCAGCTGCCATGTCAACCTTCGTCAAACAGCAGAAGGAAGCCACGCCCCTCTTCAGTTTCTCGGGTCACATGACTGAGGGCTTTGCCATTGATTGGTCGCCCAAAGTACCCGGTCGGCTGGTCAGTGGCGACTGCAAAAAGAACATCCACGTGTGGGAACCACAGGAGGGAGGGACTTCCTGGCAGATCGACCAACGGCCTTTCAGTTCTCACACCAAGTCTGTGGAGGACCTGCAGTGGTCACCCACAGAAGCCACGGTTTTTGCGTCCTGCTCTGTGGATCAGTCCATCCGGATCTGGGACACCAGAGCCCCGCCCGACTCCATGCTCTGTGCCAAGGAGGCACACTCCTCAGATGTCAACGTCATCAGTTGGAACAGGACTGAACCATTCCTCCTGTCTGGCGGGGATGACGGACTTCTGAAAGTTTGGGACTTGAGGCAGTTCCAGTCGGGCCGGCCGGTGGCTAACTTCAAGCAGCACAGCGCGCCAGTGACATCAGTAGAATGGAACCCTGTGGACTCCAGCGTGTTCGCCGCCTCTGGAGCGGACGACGTGGTCAGCCAATGGGACCTATCAGTAGAGTCAAGTGATGTGGGTGCgagggaggagggggtgaagGACCTGCCCCCCCAGCTGCTGTTCCTGCACCAGGGTCAGACAGAGGTCAAGGAAATCCATTGGCACCCGCAGATACCCGGGGTGATGGTCTCTACTGCTCTGTCAGGCTTCAACGTGTTCAGGACCATCTCTgtatagttgtgtgtgtgagggtctaagtgtgtgtgcctgtgtttttTACTTCTCAGTCCCCTCTGCTCTGTTGGCATGCATTTACCATGTACTGTGCATGTATGTTATTCCTTCTGGCCTTCACAAGTAGCATGTGTACCAACATGTTCAAAATAAAACACTTTACCAAA

Function

symbol description
grwd1 Predicted to be located in nucleus. Is expressed in several structures, including alar plate midbrain region; digestive system; midbrain; pectoral fin bud; and segmental plate. Orthologous to human GRWD1 (glutamate rich WD repeat containing 1).

NR:

description
PREDICTED: glutamate-rich WD repeat-containing protein 1

GO: NA

KEGG:

id description
K14848 RRB1, GRWD1; ribosome assembly protein RRB1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589618.2 True 1574 mRNA 0.54 7 10144533 10151145

Neighbor

gene id symbol gene type direction distance location
LOC110520825 LOC106605761 coding downstream 15631 10099437 ~ 10128902 (-)
rps9 rps9 coding downstream 67141 10074725 ~ 10077392 (-)
mboat7 mboat7 coding downstream 71678 10063117 ~ 10072855 (-)
tmc4 LOC106577196 coding downstream 82063 10053535 ~ 10062470 (-)
LOC110508742 LOC106577219 coding downstream 91165 10047635 ~ 10053368 (-)
LOC110508798 LOC106577146 coding upstream 9189 10160334 ~ 10163967 (-)
flcn LOC106577129 coding upstream 16639 10167784 ~ 10180249 (-)
LOC118945753 NA coding upstream 40212 10191357 ~ 10191771 (-)
LOC110508823 josd2 coding upstream 75751 10226896 ~ 10229409 (-)
pitpnc1b LOC106593696 coding upstream 245919 10396551 ~ 10413072 (-)
G223112 NA non-coding downstream 710 10143309 ~ 10143823 (-)
G223081 NA non-coding downstream 55171 10086852 ~ 10089362 (-)
LOC110520824 lmtk3 non-coding downstream 119677 10024448 ~ 10047484 (-)
LOC110508696 ndufa3 non-coding downstream 141639 10001415 ~ 10002941 (-)
G223115 NA non-coding upstream 2200 10153345 ~ 10153706 (-)
G223148 NA non-coding upstream 66316 10217461 ~ 10219349 (-)
G223108 NA non-coding upstream 74458 10225603 ~ 10260865 (-)
G223163 NA non-coding upstream 112115 10263260 ~ 10266898 (-)
G223169 NA non-coding upstream 147316 10298461 ~ 10298666 (-)
LOC110508724 prpf31 other downstream 121330 10019313 ~ 10024005 (-)
G223070 NA other downstream 129641 10012961 ~ 10014892 (-)
LOC110534283 LOC106573819 other downstream 461162 9679758 ~ 9689081 (-)
LOC118944443 LOC106573533 other downstream 471094 9665862 ~ 9673439 (-)
znf628 LOC106605829 other upstream 919801 11068525 ~ 11079570 (-)
G223942 LOC106576860 other upstream 1020975 11172120 ~ 11174367 (-)
G223969 LOC106605840 other upstream 1124772 11275917 ~ 11278628 (-)
LOC110509576 LOC106576947 other upstream 1576217 11727284 ~ 11741584 (-)
G224869 NA other upstream 1601706 11752851 ~ 11753680 (-)

Expression


Co-expression Network