LOC110508798 (LOC106577146)


Basic Information

Item Value
gene id LOC110508798
gene name LOC106577146
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10160334 ~ 10163967 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589630.2
TTCACTTTCAGGCTAGCCTCTGTCTGAgctcacacagacagactgcccagagggcgagagagagatagcgggTCTGTTTCCCCCACTCTGTCCATTAGCCATTTAAAGGGTGAGCAGAGAGTGAGGTCTGTAATATACTGGGTCAAcagggaaagagaaggaaagggaaaggCTGCAGTTTGACAGGCTGAGAGGTCGGAAAATCCAAAGTGAGAGCGCAGTGCAGAttgcgtgagagagagaagggggtgaaaATATTTGGAAAGTACCCGGGAGACAAAAATAGGAATTCTAAAAGACAGGTCAACTAAGCTGGAGTCTCAACAGTAGAGGAAAAAGAAAAGactcagagctctctctctctctctgtgtgtgtgtcacacactTGAAGGAACCGCTGAGGAAACTTTGCCTAGTCAGACCAAAGGACTTATTTGATCTGCGTATTGCATGCTTTCAACCACAGAAATGGAGAAGTGGCCTTTCTCATGAAGATAAAAGGATGTCACGATCAGTTTTACTGTTGCTATCAATATTGACAGTCCAAGGTAGTGGATGTGATGACTTTTTGAGGGAGGTTGTCAAGAATCTTCAAACCACCCTTAACTCAGACCACGCTGGATTTCGTAAGGTGTTCCCTAAAGACTATTGGATTTCCCACCACTACAATGTCAACCTGCTGTGCAACACTGATCCGTGTTGTGTGTTCCGAGCTGCGACTGTTCTCTCTGACTCCTGGCTCCAGCTCCGCAGCCAGCTGTGGCCAGAGCACCATAGCTTCGAATTCATCTCCAACCTTATACAAGCCCTGGATGACAGGGGTATGACAAAAGGGAGATTTGAGGATCCTGACCCTTCAgttcttccctctgtctcctcctctccagagaAACTTCTCAACTTCACTTCATCTGTTTTCTCCAAATGGCTGGAGCTGGGGTGCTCGACCCCGGTGGACACTTGTCCCTTCCCCACTCTGGCCTCTCCGGCTGGGGAGGAAGAAAGGGTAGCTTTGGAAAGTAAAAAAGTGAGGTTATTAACCACACGAGCAGTTCACATGCAACACAGGGAGAATGAAGGGGAAACAGAGATGAGGTTAAACACACCTCCACCAACCAATAGGAGCCCAACATCCAAAGGTGGGCTCCTATTAGTTCTTTCTGGgtctttgttttttttaatctttatttaactaggcaagtcaattaagaacaaattcttatttacaatgacagcttacatTGGAGCCTCCTGTTATGTGGACTGCCCTGGATGCTACTGTAGAGTGGTTGCTATAGTTACTGAAGTGGATCTCTTCAATGGCGCACACAAAATgcaagaaataaaataaataagattCCCTGTTTCTGAAAGAATACATCCTTTTCATTTTGCAATGTGTTTTGGAGCACTGGTTGGCTTTTTCTTCTCAATCTGTCCATTCTAGCAGTTCTAATACAGTAAGCTTTGTCAATCAAGTGACTGACATGCACATGTAATTGTTGCACTGAAAGTACAACTGCAGTCAAGATTATGTATAGAATAACAACCTTTTAATTTACTGTCTGCACACCAGAGTtctattattataattataagaAACCGTTACAACATAGCCATATGTATAAAAAGCCATATTCTATGCAAGCTAACTAAACACTAACAAGTGTTTTATATTGAGCAAGCTACAGCACATAAATTATTGTCCAATATTTCTGATCAAATTCATATGATGTTTACAATGCAGTGGAATGTgaatatttgtttgtttgttggtctTCAATGAATGTTGTTTTTTTCTATGAACTTTTGTACATACTGCATCTTGTAAATAAAAACCATGCAGCCGT

Function

NR:

description
uncharacterized protein LOC110508798

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589630.2 True 1850 mRNA 0.43 5 10160334 10163967

Neighbor

gene id symbol gene type direction distance location
LOC110508790 grwd1 coding downstream 9189 10144533 ~ 10151145 (-)
LOC110520825 LOC106605761 coding downstream 31432 10099437 ~ 10128902 (-)
rps9 rps9 coding downstream 82942 10074725 ~ 10077392 (-)
mboat7 mboat7 coding downstream 87479 10063117 ~ 10072855 (-)
tmc4 LOC106577196 coding downstream 97864 10053535 ~ 10062470 (-)
flcn LOC106577129 coding upstream 3817 10167784 ~ 10180249 (-)
LOC118945753 NA coding upstream 27390 10191357 ~ 10191771 (-)
LOC110508823 josd2 coding upstream 62929 10226896 ~ 10229409 (-)
pitpnc1b LOC106593696 coding upstream 233097 10396551 ~ 10413072 (-)
LOC110508947 LOC106576934 coding upstream 667599 10831566 ~ 10847242 (-)
G223115 NA non-coding downstream 6628 10153345 ~ 10153706 (-)
G223112 NA non-coding downstream 16511 10143309 ~ 10143823 (-)
G223081 NA non-coding downstream 70972 10086852 ~ 10089362 (-)
LOC110520824 lmtk3 non-coding downstream 135478 10024448 ~ 10047484 (-)
G223148 NA non-coding upstream 53494 10217461 ~ 10219349 (-)
G223108 NA non-coding upstream 61636 10225603 ~ 10260865 (-)
G223163 NA non-coding upstream 99293 10263260 ~ 10266898 (-)
G223169 NA non-coding upstream 134494 10298461 ~ 10298666 (-)
G223172 NA non-coding upstream 142720 10306687 ~ 10306960 (-)
LOC110508724 prpf31 other downstream 137131 10019313 ~ 10024005 (-)
G223070 NA other downstream 145442 10012961 ~ 10014892 (-)
LOC110508696 ndufa3 other downstream 157440 10001415 ~ 10002941 (-)
LOC110534283 LOC106573819 other downstream 476963 9679758 ~ 9689081 (-)
LOC118944443 LOC106573533 other downstream 486895 9665862 ~ 9673439 (-)
znf628 LOC106605829 other upstream 906979 11068525 ~ 11079570 (-)
G223942 LOC106576860 other upstream 1008153 11172120 ~ 11174367 (-)
G223969 LOC106605840 other upstream 1111950 11275917 ~ 11278628 (-)
LOC110509576 LOC106576947 other upstream 1563395 11727284 ~ 11741584 (-)
G224869 NA other upstream 1588884 11752851 ~ 11753680 (-)

Expression


Co-expression Network