LOC110508875 (LOC106605773)


Basic Information

Item Value
gene id LOC110508875
gene name LOC106605773
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10278141 ~ 10287089 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589752.2
TTCTCTCGCGCCTTGCCCTATGAGTTGTGACGTCACGTGAACTGCCCGTGTTCGTTCCAGCTGAGAGGACAGCCGTCGCGCAGCCCAAATCCAAGCCCGTGCTTCAGTACATTGGCTACACAAAGTACGCGGGGGAAAAGAAGAACCCCCCCTCCCGAAAGAACGATAGAGCGACAGGAAAGCTTAAAGAAAAAAGTAATACAGCTTGTCACCGACAAATAGCGCGCGTACTCAGAGCCTTCTCCGCTTTTCGCTCTTCATTATTTGTTCATTTGGCATTGTGGAGTAGGACATTATTTTTCCTTGCTTCGAGTTTCATTTTTGATCATTTTTTAATCGTCATTTGTTTGGGGTGTTGATCAACTCAGGATATTTTTCGACAACAACTTATTATTTTCCAGCTCGGATTTTATTTTGTCCACCTTTGAATTGACCATGGGCACCAGTCATTAGTTTGACGTTTTACAACTAGTCTCTATTGGAGAATAACATCTTGATCTGCACCGGGGATTTAAAATAATATAGTGTTGCACCATATCTACTGGAATACTGTCTATTATAATGATACAACAGTGGATATAAGAACACTTCATAGCCTAAATAGAGGGAAAGCGGTGATCAATCTGCCAGTCATTTCGACTCCGCCTGCGCTCCAGGATCCTAATCAACAACCAGGTCCGGCCAACTATGTCCAGGCAGCTCACCCAGCTCCTGACCCCGGACCTCCCAGCCGGCGCTAGCCCGCAGTTCGGGAATTGCAACCAGTCTGGTGGCTCCATCAGCGGTGGACACCTCAACTCCATGGCTAGTTTgaaatccctcctgcagcatccGATGAAGGGAGACCGTGCAATTCTCAAAGACTGCTGCGACGTTAAAGACAAAGACAGAACCATCACAGACATGGATGAGGACTCCTTGGGTGGCGGGAACGGCGGCTGCAACATGCGTAGCGGCAGCAGCGGGgtgagcagcagcaacagtaacgCCAGcggaggaggagctggaggattTAACCAGTCTGCGTTCCTGGGACCCCTCCTGTGGGAGAGGACCCTGCCAGTGGAAGGAGGCCTCTTCCAGCTGCAGTACATGGACCTGGAGGAATTCCTCACAGAGAACGGCATGGGCGGAGTCCACGGCCAGAACAGTTCCAGTACAGCCCAGATCCCATCCCAGAGTTCCCAGTCGGCGGTGCCCAATCAGAGTTCCCAGTGTCCCCCCTCATCGCCTCCACCCTGCTCTTCAGcctcctcctcgtcatcctcaTCTTCCCCGTCGCTCATCGGCCTGGAGGTGGCCCAGTCCAACATGCAGGGAGGACTTGACTATGGAGGCAGTCAATCGAGCATGAACGACGACTGCGGCTCGCCtggttcctctgtctcctcttcgTCCTGCACTCCTCTCATGACGCCCACATCCAACGGTCCAGACGTGATGGGTGGCTTTGAACCCGACGCGGCCGACGTGGCTCTGTCCAGTGTGCCCGGCCAGGACGCCTTCGACCCCCGCAGACACCGCTTCAGCGAGGACGAACTCAAACCACAGCCCATGATCAAGAAGGCCCGCAAGATGCTGGTGCCAGCAGACCTCAAGGTTGGTAGTCAGAGAGATGATAAGTACTGGTCCCGGCGGTGTAAGAACAACGAGGCAGCCAAGCGTTCTCGTGACGCGCGGCGCTTGAAGGAAAACCAGATCTCGGTCCGCGCCGCCttcctggagagagagaaccaggcaCTCAGACAGGAAGTGGCTGACATGAGGAAGGAGCTCGGTCGCTGCCGCAACATTCTCAACAAATATGAGAATCGCCATGGAGACCAGTGAgacaagaggaggagaaagagatggaactGATGGGTGGAATGGGGTGACATGATGATGataacgatgatgatgatgaatgtatGAGACGATGAGAAGGGTGATATAAAGAAGCTCAGGTGTCACGTTTTGATGATGTCAGAGTGGacagggttaaaggttagggacAGAGAGATTACATAACCTGGAGGACTGTTGCCCCTTTAGATGAAAGAAGAAAACGTCACTTTGAGGATTTTGATATCGGAGAATTGTATATTTTTATATTAAGACTAGAGGGGGAGCAAATTTTGGAAATAATTTTTGTATATTTTCTATATGAATGGGAAAGATGTaagatatagagagatggagggctatGACAAAATATCTTTTTACAGTAGATTGATAAAGGAGATGCTATTTTAGAGGTGTTAGACAGGGATTTTTAGACAGGATTCAGAGTCCGGGACTAGGAGGCAAGGCAGCCATTTTAAACTGTAAAATAGCGAGCAAAATGATTTTAAAATTGTACAGTTCaacatttctttgtggattttacTCAAGCACTTAATTTGTTTTCTTTGTTGTGTTTCTAACTGATGGGGTTTGGGCTGAAATGGTaggaaagtgaaagagagagagagcgagagagaaatgggagaaacACTATTAACCCAGCACAATCTTCAGCACTTGCACAGTGTTTGTAAATAACAAGTCCTTCATATTGTTACAACTTTTGCAACCTTTAACAGTTTGGACTGTTTAGTAGTTGTCTAGATGTCTGGGCTTTGGTGCAGCTCTTACAGCTCTTACATTTGATTATAGCTGCACTATCTCCTCTGTCATATAGAGAATTGTATTATGTGACCCCAAGACTAGCAGGGCATTCAATCACACTACAGCTAATGGATGGGGCGACTGTTAGTTTTTATTATGTATACTATGAACTCATATTGATGAGCCCttggccatctctctctctcgctctctttctgtcaatTTCTGTCCTTTTAGATTGCTGTCAGTTCTAACTGATATAGAATATCTTGCCCAAGCTGGGTTGGTAGGATTTTTGAGTTGTTCTGGTTACAGTGGACCGTTTTGATCTTCTCTCTGCATTGTGATGTTTTTTTCCTTCCTATGTTTTTGATATCGAATTGATCCAATCCCAACACGGTTAATGTCGCTTACAACCAATCACGAAAAGGCTATTTTTACCTTTAACCAATCCTAACAACCGGTCTCTGTGGTTCTAGATTGTATACATAATACCACAATGTCTTCACACCCTCCTAAATAGTCCACCAACTACCCAGGAAAAAGCACACTTGTGTTACTGTACAATATTAATAATTTTAGCTAGCATTCTTATTATTGGTAGAAGATAAatattgtctatattgaatatacCAGTTTGTGTATTTTACATAGGTATATGCTAAGTGTGAATGTTGCAGAGATAAGATGCGTGTATGACTGCGTATATGCAAATTATATTCCAGGAGATGGGGTTTGTGGTAGGGTGTCTTATCAAACAAATGTGACCCTATTCTCCCATATACCCAGGGAATAGGTTATCATTCGAGATGATGCTATTATTACTCTCCCCATCGATCGGAATGGTGTTAAATTCTCAGATTTCTGGGACTAATAAAAAAGCCAAAATGTAAAATGTTGATTTATTAAGGTTGTTGATACTTTCTGTCAGTTCTCCGGCATTTCTGTGTTGTTGAGCATCGTCTTAGTATCCACATAGTGTCGTGTTTCCCTACCGACTCACTAAACCCAGGGGAGAGAAAGGGCCCAGTCAACCCAGTCATAGTGCTTCTTTTCCTCAACGACCATGTTATAAATAACTACCATTACTATTATTATGATTATGATGATTGTTACCCCCCTTTATTGTTGCTGTTATATATAATTGAATGATTTTATTTCTTTGGATGAACATGATTTGTTTCGTGTTGAAGCATCTTTGATCTCAAGCTATCCTCACAGAGAGACTATTCAGACATGCATCCTTGTTTTTATGTCACTTCCTGCCCTGCACCATGTACATCCTGTTTTGGTCCCTCGAGGGCCGCTGGTTTGTTCATAACCCCTATGGACAGTTTATATCCGGACTTCTCTGAAATACAGTTCCCAGAGGATGGCGGCCATCTTGGTTTCTCTGTTGATCATGGATTCCACAATCTCGCTGGCTCATCTCATACCTGGAGAACGACAGCGGTGGAATCCCATGCACTTCTGACTGTACACGTCTGTTCAGTTCTCTAGTTGTGTATGGACTATGCACGCTAGCCACAGTTTTCCTCTTGGTTTTCTGCAGCCTATTTTCACCTCAGTGACTGTATGTATGCTCTCCCAACTGGATGTTGTTCCTGGTCTCCCTGACGTGGATGATGATAACTCTTATAGTGACTTTTCTTGAACTACAGCTACCCATCTGCACCGGTGGTGTCCACTGTTCCAGCCCACTCAGTGCTGGCAATGGGGATGTCGTTGAACTTTCCCGAAAACACAAATAAAAGATTGTTCTTACTTA
>XM_021589761.2
CTTGCCCTATGAGTTGTGACGTCACGTGAACTGCCCGTGTTCGTTCCAGCTGAGAGGACAGCCGTCGCGCAGCCCAAATCCAAGCCCGTGCTTCAGTACATTGGCTACACAAAGTACGCGGGGGAAAAGAAGAACCCCCCCTCCCGAAAGAACGATAGAGCGACAGGAAAGCTTAAAGAAAAAAGTAATACAGCTTGTCACCGACAAATAGCGCGCGTACTCAGAGCCTTCTCCGCTTTTCGCTCTTCATTATTTGTTCATTTGGCATTGTGGAGTAGGACATTATTTTTCCTTGCTTCGAGTTTCATTTTTGATCATTTTTTAATCGTCATTTGTTTGGGGTGTTGATCAACTCAGGATATTTTTCGACAACAACTTATTATTTTCCAGCTCGGATTTTATTTTGTCCACCTTTGAATTGACCATGGGCACCAGTCATTAGTTTGACGTTTTACAACTAGTCTCTATTGGAGAATAACATCTTGATCTGCACCGGGGATTTAAAATAATATAGTGTTGCACCATATCTACTGGAATACTGTCTATTATAATGATACAACAGTGGATATAAGAACACTTCATAGCCTAAATAGAGGGAAAGCGGTGATCAATCTGCCAGTCATTTCGACTCCGCCTGCGCTCCAGGATCCTAATCAACAACCAGGTCCGGCCAACTATGTCCAGGCAGCTCACCCAGCTCCTGACCCCGGACCTCCCAGCCGGCGCTAGCCCGCAGTTCGGGAATTGCAACCAGTCTGGTGGCTCCATCAGCGGTGGACACCTCAACTCCATGGCTAGTTTgaaatccctcctgcagcatccGATGAAGGGAGACCGTGCAATTCTCAAAGACTGCTGCGACGTTAAAGACAAAGACAGAACCATCACAGACATGGATGAGGACTCCTTGGGTGGCGGGAACGGCGGCTGCAACATGCGTAGCGGCAGCAGCGGGgtgagcagcagcaacagtaacgCCAGcggaggaggagctggaggattTAACCAGTCTGCGTTCCTGGGACCCCTCCTGTGGGAGAGGACCCTGCCAGTGGAAGGAGGCCTCTTCCAGCTGCAGTACATGGACCTGGAGGAATTCCTCACAGAGAACGGCATGGGCGGAGTCCACGGCCAGAACAGTTCCAGTACAGCCCAGATCCCATCCCAGAGTTCCCAGTCGGCGGTGCCCAATCAGAGTTCCCAGTGTCCCCCCTCATCGCCTCCACCCTGCTCTTCAGcctcctcctcgtcatcctcaTCTTCCCCGTCGCTCATCGGCCTGGAGGTGGCCCAGTCCAACATGCAGGGAGGACTTGACTATGGAGGCAGTCAATCGAGCATGAACGACGACTGCGGCTCGCCtggttcctctgtctcctcttcgTCCTGCACTCCTCTCATGACGCCCACATCCAACGGTCCAGACGTGATGGGTGGCTTTGAACCCGACGCGGCCGACGTGGCTCTGTCCAGTGTGCCCGGCCAGGACGCCTTCGACCCCCGCAGACACCGCTTCAGCGAGGACGAACTCAAACCACAGCCCATGATCAAGAAGGCCCGCAAGATGCTGGTGCCAGCAGACCTCAAGGATGATAAGTACTGGTCCCGGCGGTGTAAGAACAACGAGGCAGCCAAGCGTTCTCGTGACGCGCGGCGCTTGAAGGAAAACCAGATCTCGGTCCGCGCCGCCttcctggagagagagaaccaggcaCTCAGACAGGAAGTGGCTGACATGAGGAAGGAGCTCGGTCGCTGCCGCAACATTCTCAACAAATATGAGAATCGCCATGGAGACCAGTGAgacaagaggaggagaaagagatggaactGATGGGTGGAATGGGGTGACATGATGATGataacgatgatgatgatgaatgtatGAGACGATGAGAAGGGTGATATAAAGAAGCTCAGGTGTCACGTTTTGATGATGTCAGAGTGGacagggttaaaggttagggacAGAGAGATTACATAACCTGGAGGACTGTTGCCCCTTTAGATGAAAGAAGAAAACGTCACTTTGAGGATTTTGATATCGGAGAATTGTATATTTTTATATTAAGACTAGAGGGGGAGCAAATTTTGGAAATAATTTTTGTATATTTTCTATATGAATGGGAAAGATGTaagatatagagagatggagggctatGACAAAATATCTTTTTACAGTAGATTGATAAAGGAGATGCTATTTTAGAGGTGTTAGACAGGGATTTTTAGACAGGATTCAGAGTCCGGGACTAGGAGGCAAGGCAGCCATTTTAAACTGTAAAATAGCGAGCAAAATGATTTTAAAATTGTACAGTTCaacatttctttgtggattttacTCAAGCACTTAATTTGTTTTCTTTGTTGTGTTTCTAACTGATGGGGTTTGGGCTGAAATGGTaggaaagtgaaagagagagagagcgagagagaaatgggagaaacACTATTAACCCAGCACAATCTTCAGCACTTGCACAGTGTTTGTAAATAACAAGTCCTTCATATTGTTACAACTTTTGCAACCTTTAACAGTTTGGACTGTTTAGTAGTTGTCTAGATGTCTGGGCTTTGGTGCAGCTCTTACAGCTCTTACATTTGATTATAGCTGCACTATCTCCTCTGTCATATAGAGAATTGTATTATGTGACCCCAAGACTAGCAGGGCATTCAATCACACTACAGCTAATGGATGGGGCGACTGTTAGTTTTTATTATGTATACTATGAACTCATATTGATGAGCCCttggccatctctctctctcgctctctttctgtcaatTTCTGTCCTTTTAGATTGCTGTCAGTTCTAACTGATATAGAATATCTTGCCCAAGCTGGGTTGGTAGGATTTTTGAGTTGTTCTGGTTACAGTGGACCGTTTTGATCTTCTCTCTGCATTGTGATGTTTTTTTCCTTCCTATGTTTTTGATATCGAATTGATCCAATCCCAACACGGTTAATGTCGCTTACAACCAATCACGAAAAGGCTATTTTTACCTTTAACCAATCCTAACAACCGGTCTCTGTGGTTCTAGATTGTATACATAATACCACAATGTCTTCACACCCTCCTAAATAGTCCACCAACTACCCAGGAAAAAGCACACTTGTGTTACTGTACAATATTAATAATTTTAGCTAGCATTCTTATTATTGGTAGAAGATAAatattgtctatattgaatatacCAGTTTGTGTATTTTACATAGGTATATGCTAAGTGTGAATGTTGCAGAGATAAGATGCGTGTATGACTGCGTATATGCAAATTATATTCCAGGAGATGGGGTTTGTGGTAGGGTGTCTTATCAAACAAATGTGACCCTATTCTCCCATATACCCAGGGAATAGGTTATCATTCGAGATGATGCTATTATTACTCTCCCCATCGATCGGAATGGTGTTAAATTCTCAGATTTCTGGGACTAATAAAAAAGCCAAAATGTAAAATGTTGATTTATTAAGGTTGTTGATACTTTCTGTCAGTTCTCCGGCATTTCTGTGTTGTTGAGCATCGTCTTAGTATCCACATAGTGTCGTGTTTCCCTACCGACTCACTAAACCCAGGGGAGAGAAAGGGCCCAGTCAACCCAGTCATAGTGCTTCTTTTCCTCAACGACCATGTTATAAATAACTACCATTACTATTATTATGATTATGATGATTGTTACCCCCCTTTATTGTTGCTGTTATATATAATTGAATGATTTTATTTCTTTGGATGAACATGATTTGTTTCGTGTTGAAGCATCTTTGATCTCAAGCTATCCTCACAGAGAGACTATTCAGACATGCATCCTTGTTTTTATGTCACTTCCTGCCCTGCACCATGTACATCCTGTTTTGGTCCCTCGAGGGCCGCTGGTTTGTTCATAACCCCTATGGACAGTTTATATCCGGACTTCTCTGAAATACAGTTCCCAGAGGATGGCGGCCATCTTGGTTTCTCTGTTGATCATGGATTCCACAATCTCGCTGGCTCATCTCATACCTGGAGAACGACAGCGGTGGAATCCCATGCACTTCTGACTGTACACGTCTGTTCAGTTCTCTAGTTGTGTATGGACTATGCACGCTAGCCACAGTTTTCCTCTTGGTTTTCTGCAGCCTATTTTCACCTCAGTGACTGTATGTATGCTCTCCCAACTGGATGTTGTTCCTGGTCTCCCTGACGTGGATGATGATAACTCTTATAGTGACTTTTCTTGAACTACAGCTACCCATCTGCACCGGTGGTGTCCACTGTTCCAGCCCACTCAGTGCTGGCAATGGGGATGTCGTTGAACTTTCCCGAAAACACAAATAAAAGATTGTTCTTACTTA

Function

NR:

description
hepatic leukemia factor-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589752.2 False 4357 mRNA 0.46 5 10278141 10287089
XM_021589761.2 True 4331 mRNA 0.46 5 10278152 10287089

Neighbor

gene id symbol gene type direction distance location
LOC110508845 LOC106605771 coding upstream 1965 10267749 ~ 10276176 (+)
LOC110508861 NA coding upstream 11239 10245328 ~ 10266902 (+)
LOC110508838 ube2s coding upstream 38177 10233152 ~ 10239964 (+)
LOC110508830 LOC106592928 coding upstream 51305 10180438 ~ 10226836 (+)
LOC110508782 LOC106605762 coding upstream 137776 10135891 ~ 10140365 (+)
LOC110520828 NA coding downstream 8375 10295464 ~ 10306199 (+)
LOC110508886 LOC106605776 coding downstream 19759 10306848 ~ 10314535 (+)
LOC110508924 LOC106605777 coding downstream 53840 10340929 ~ 10363673 (+)
LOC110520829 LOC102782376 coding downstream 144669 10431758 ~ 10605056 (+)
prkcg LOC105019084 coding downstream 374001 10661090 ~ 10701728 (+)
G222879 NA non-coding upstream 124446 10153218 ~ 10153695 (+)
G222875 grwd1 non-coding upstream 127993 10149049 ~ 10150148 (+)
G222858 NA non-coding upstream 148898 10129028 ~ 10129243 (+)
G222855 NA non-coding upstream 153830 10124074 ~ 10124311 (+)
G222910 NA non-coding downstream 2332 10289421 ~ 10289629 (+)
G222911 NA non-coding downstream 3463 10290552 ~ 10290846 (+)
G222916 NA non-coding downstream 12059 10299148 ~ 10299461 (+)
G222918 NA non-coding downstream 15115 10302204 ~ 10303215 (+)
G222919 NA non-coding downstream 17775 10304864 ~ 10305088 (+)
sphk2 LOC106605743 other upstream 365043 9900809 ~ 9916529 (+)
G222353 LOC106573525 other upstream 596389 9679760 ~ 9681752 (+)
G222345 LOC106594812 other upstream 667002 9606305 ~ 9611139 (+)
LOC110520820 LOC107573682 other upstream 771355 9490333 ~ 9508263 (+)
LOC110520833 LOC106575226 other downstream 429562 10716613 ~ 10767669 (+)
cacng8b LOC106576929 other downstream 482584 10769638 ~ 10827279 (+)
G223418 u2af2 other downstream 566613 10853702 ~ 10856200 (+)
LOC110508993 LOC106576906 other downstream 589668 10876757 ~ 10878635 (+)

Expression


Co-expression Network