Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110508886 |
| gene name | LOC106605776 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 10306848 ~ 10314535 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| C2H2 finger domain transcription factor crzA-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021589775.2 | False | 3060 | mRNA | 0.53 | 3 | 10306848 | 10314535 |
| TU254624 | False | 210 | lncRNA | 0.46 | 1 | 10310722 | 10310931 |
| TU254625 | True | 571 | TUCP | 0.40 | 1 | 10311682 | 10312252 |
10,305,000
10,306,000
10,307,000
10,308,000
10,309,000
10,310,000
10,311,000
10,312,000
10,313,000
10,314,000
10,315,000
10,316,000
10,317,000
10,318,000
10,319,000
10,320,000
10,321,000
10,322,000
10,323,000
10,324,000
NC_048567.1
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| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110520828 | NA | coding | upstream | 649 | 10295464 ~ 10306199 (+) |
| LOC110508875 | LOC106605773 | coding | upstream | 19759 | 10278141 ~ 10287089 (+) |
| LOC110508845 | LOC106605771 | coding | upstream | 30672 | 10267749 ~ 10276176 (+) |
| LOC110508861 | NA | coding | upstream | 39946 | 10245328 ~ 10266902 (+) |
| LOC110508838 | ube2s | coding | upstream | 66884 | 10233152 ~ 10239964 (+) |
| LOC110508924 | LOC106605777 | coding | downstream | 26394 | 10340929 ~ 10363673 (+) |
| LOC110520829 | LOC102782376 | coding | downstream | 117223 | 10431758 ~ 10605056 (+) |
| prkcg | LOC105019084 | coding | downstream | 346555 | 10661090 ~ 10701728 (+) |
| LOC110520833 | LOC106575226 | coding | downstream | 402078 | 10716613 ~ 10767669 (+) |
| cacng8b | LOC106576929 | coding | downstream | 455103 | 10769638 ~ 10827279 (+) |
| G222919 | NA | non-coding | upstream | 1760 | 10304864 ~ 10305088 (+) |
| G222918 | NA | non-coding | upstream | 3633 | 10302204 ~ 10303215 (+) |
| G222916 | NA | non-coding | upstream | 7387 | 10299148 ~ 10299461 (+) |
| G222911 | NA | non-coding | upstream | 16002 | 10290552 ~ 10290846 (+) |
| G222910 | NA | non-coding | upstream | 17219 | 10289421 ~ 10289629 (+) |
| G222938 | NA | non-coding | downstream | 21308 | 10335843 ~ 10336320 (+) |
| G222939 | NA | non-coding | downstream | 21848 | 10336383 ~ 10336717 (+) |
| G222940 | NA | non-coding | downstream | 22834 | 10337369 ~ 10337761 (+) |
| G223226 | NA | non-coding | downstream | 77502 | 10392037 ~ 10392260 (+) |
| G223228 | NA | non-coding | downstream | 78844 | 10393379 ~ 10393580 (+) |
| sphk2 | LOC106605743 | other | upstream | 393750 | 9900809 ~ 9916529 (+) |
| G222353 | LOC106573525 | other | upstream | 625096 | 9679760 ~ 9681752 (+) |
| G222345 | LOC106594812 | other | upstream | 695709 | 9606305 ~ 9611139 (+) |
| LOC110520820 | LOC107573682 | other | upstream | 800062 | 9490333 ~ 9508263 (+) |
| G223418 | u2af2 | other | downstream | 539167 | 10853702 ~ 10856200 (+) |
| LOC110508993 | LOC106576906 | other | downstream | 562222 | 10876757 ~ 10878635 (+) |
| G223434 | LOC106595748 | other | downstream | 635614 | 10950149 ~ 10952739 (+) |
| LOC110508886 | LOC106605776 | other | downstream | 751 | 10306848 ~ 10314535 (+) |
