LOC110508886 (LOC106605776)


Basic Information

Item Value
gene id LOC110508886
gene name LOC106605776
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10306848 ~ 10314535 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589775.2
GGCAGCGCGCAGAATCTCCACTCCTAACTAGTCCGCCTCTCATTCATATTTGGTCTTCCGGAAGTATCCACAGCTCGGATTTAGGCATGTTCCAAAATGGATTCTCAACAGACAGGGGTTCTGACCAATGGTGGCTCAGATAACAGGAGTGTCTGCCAATCCTTGAAGAGATCGGGGACTGTGCCAGAGATCCATGAGGAGTCAGTGGACTCCTTGATCTTATCCTACCCACCAGGTAACCTCCAATAGTTCTCCCTTATACAGGTGTACTCCAGTACAGGTGTCCAATCAAAACCTTTTTAGGCCAAACGAGGAGGGGCTGAGAGAGCGCCCTGCGGGCTCAAACAACCAATCACAGTCAAGACTGGACTTCCTGGTGTGTGCGATCAACCAATCAGAGTCAAATCAGACGTTCCTGGATTATGCAACAGACTCTGCAGCTCTCAGCTCTACCAAAGACGTGCCTCCCTCTGATTCTAAAGGGAGTAGGTTTAGAAGCCAGAGCTGTTTGGTCTGGGACCAGTTGAAATGCCCTGACCTCCACTACTGTGACTGCTACGGGTCAGATGGAGGATGTGTGTGTTGAAGAGATAGAACACACTGAGGAGCCTCTCTACAGgatggagacagaagagagggatgagaggagagatggagagaaggatgtTACACAAGACAGGAACGGTAGTCCCATTGTCCCTGAAACGCCTCTCATCTCCGACACAGCCAaggcagagagggatggagggataaggggggagaaagaaaggaaagatagagaggatgagagagtgaTCCCTCTTTTCCTACCCCCTAGTCGATGCCATGGTGGAaaagagagaccaggagaggatagaggagagagagcagaggcagGGAAAGGAGtttgggggagaagagaggaagaggagggagaagtatTGGATCTGAGCTTCCCTAAAAAGAGAGAGATTAAAGAGAGGAGCCTTTGGCATGAGAGCTCACTGCTTATGGAGGTAGATGAGGTAGAGGGGGATGGAGATAGGGACATAGTAGAGGAAGATGATGGCGATGATGAAGAGGATTCTATATTGAGAATGGATGGAGCTGACATTTTGGGGGCACCTCTCTTGTCTCCCTTGTTCTTCTCTACCTCCGttttcacctccctctcttccatagACTCTGAAAGTGAAGGTCTTCTCCTGATAGATGACCAGGGTATTCCATACAcactcacccctgaggggcacAAAGTGCCCCAAATGGACTCTTCCAGGCCAGACAACCCCCCCCCAAGCCAGCCAAAGGTGCAGTCCAGCTCATTGGAGGTAGAGGATGACAGGTcgtctcatataaccacagcatGGGTCACTTACCTCAGCCGAGGTTTAGTAaaaactccacacacacacaaggaaaaCACATGTCCCACTCCTGTTACGTCTATGAAACCCTCACAGAAGTCAGAACTTCTAAAAAATACAGAACACTCAAAGAACCCAGAACTCTCACAGAATGCGGAACCCCCTAAGGTTCTAGATTCAGATGTGAAATCTGTTAGTGAGGCTAGTGCTGTTGTTTCCCAACCCTCTGGTTCTGCTGTACACCTCCAACCCCCTCAGCCCATCCAGATCCTGACTAACCCCTCCTCCAACacccccatcctcctcttcccctcctccccccagctCTCCTCCATTCCCTTAACCAAGACTGATGCCAACCCAGGCCTCCtggccttctctctccccctctccctcacccagAACACTCCCAGTGCCTCTACCTCTAtgttccttctcctctcctcctccaccacctcttccTCCGGTCAGtctttctctacctccacccccatTGCTCTCATTGACCCCTCCACCGGTCAGCTCTCCCAAATCACTGCCTCCTCTtcatcccctctttctctctctctctcttctggtcAGCTCGCCACATCAGTGTCATCCCTCCCGGCCAATCCCTCTCACCCAGTTATTAGAACGACACCCAACAACTCCCCTACCATCCTACCAAGAGAGAGTTCCAGCGTTAACCTTCCCGCCCCCCTGACCTCCCCCTCTGtggtctcctcccctccctccaagCAGCCCAGTGCTGATGGCAGTTCTAAAGCAGTTCTACTCAGCTCACCTCCTCACAAACACACTGAACCAAACTGTTGTGACCCCAACACCGATCATCAGTCACTATCTACTGAAGAAACCCAAATGGAGTCTGTCCCAAATGGGTCATCCCCTACTAAAGCCCCTCCCTTTACACATCCGCAATCCCCTTCTCTGTCCTTTGACTTCAGTTTGGAGGCATCCGACCAATCAAAAGCCCCAGAGTCAAAGCACACCTCCCTCCCATGGGACGACCATCTCTACTTCTCCTCTGCCAccgctcctccctcccctccccttgccCCCATCTTCCCCTCCAGCGAACCCAGGAACCTGAACCCCCTGGACCCTCTGGACCCCCTGTCcccagcctcctctccctcctctgggCCACGAAGGGTCCTCTACTGCCCTCTCTGCCCCAGGATCTTCTACTACCTGTCTGACCTGGAGCGTCATTCCATCACCCACTCTCAGAACAAACCCCATGTCTGCCTGCAGTGTGGCAAGGCCTTCAAACGCTCCAGCCATTTGCAGAGACACAAGCACATTCACACGGGCGAGAGGAACTTTGTGTGCCCCATCTGCTCCAAGCGTTTCAGGGAGGCAGGCGAGCTGCAGCGCCATCAGAgggtacacacaggagagaagccctacCAGTGCCCGCTGTGCCACACACGCTTCGCAGAGCGCAACACCATGCGTCGACACACTAGACGCAAACACCCTTACCACCAGGCAGCTATGGAGATGCTGTccgagagaggagcagggggaggaggaagagaaggatgggATGAAGATGAGGGCACAGAAGAGTGGTATAGTTCCACAGTGTCCAACTTGGACAACTCTGACTCTGAACCAGATTCTGAGGTCACTTCCTGAGGCTGATCCTCTTGAAtaaaggaaaggaggaggaggaggaggaggagtagaaggaggaggaggagga
>TU254624
ggggagaagagaggaagaggagggagaagtatTGGATCTGAGCTTCCCTAAAAAGAGAGAGATTAAAGAGAGGAGCCTTTGGCATGAGAGCTCACTGCTTATGGAGGTAGATGAGGTAGAGGGGGATGGAGATAGGGACATAGTAGAGGAAGATGATGGCGATGATGAAGAGGATTCTATATTGAGAATGGATGGAGCTGACATTTTGGG
>TU254625
TGACCCCTCCACCGGTCAGCTCTCCCAAATCACTGCCTCCTCTtcatcccctctttctctctctctctcttctggtcAGCTCGCCACATCAGTGTCATCCCTCCCGGCCAATCCCTCTCACCCAGTTATTAGAACGACACCCAACAACTCCCCTACCATCCTACCAAGAGAGAGTTCCAGCGTTAACCTTCCCGCCCCCCTGACCTCCCCCTCTGtggtctcctcccctccctccaagCAGCCCAGTGCTGATGGCAGTTCTAAAGCAGTTCTACTCAGCTCACCTCCTCACAAACACACTGAACCAAACTGTTGTGACCCCAACACCGATCATCAGTCACTATCTACTGAAGAAACCCAAATGGAGTCTGTCCCAAATGGGTCATCCCCTACTAAAGCCCCTCCCTTTACACATCCGCAATCCCCTTCTCTGTCCTTTGACTTCAGTTTGGAGGCATCCGACCAATCAAAAGCCCCAGAGTCAAAGCACACCTCCCTCCCATGGGACGACCATCTCTACTTCTCCTCTGCCAccgctcctccctcccctccccttgccCCCATCTTCCCC

Function

NR:

description
C2H2 finger domain transcription factor crzA-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589775.2 False 3060 mRNA 0.53 3 10306848 10314535
TU254624 False 210 lncRNA 0.46 1 10310722 10310931
TU254625 True 571 TUCP 0.40 1 10311682 10312252

Neighbor

gene id symbol gene type direction distance location
LOC110520828 NA coding upstream 649 10295464 ~ 10306199 (+)
LOC110508875 LOC106605773 coding upstream 19759 10278141 ~ 10287089 (+)
LOC110508845 LOC106605771 coding upstream 30672 10267749 ~ 10276176 (+)
LOC110508861 NA coding upstream 39946 10245328 ~ 10266902 (+)
LOC110508838 ube2s coding upstream 66884 10233152 ~ 10239964 (+)
LOC110508924 LOC106605777 coding downstream 26394 10340929 ~ 10363673 (+)
LOC110520829 LOC102782376 coding downstream 117223 10431758 ~ 10605056 (+)
prkcg LOC105019084 coding downstream 346555 10661090 ~ 10701728 (+)
LOC110520833 LOC106575226 coding downstream 402078 10716613 ~ 10767669 (+)
cacng8b LOC106576929 coding downstream 455103 10769638 ~ 10827279 (+)
G222919 NA non-coding upstream 1760 10304864 ~ 10305088 (+)
G222918 NA non-coding upstream 3633 10302204 ~ 10303215 (+)
G222916 NA non-coding upstream 7387 10299148 ~ 10299461 (+)
G222911 NA non-coding upstream 16002 10290552 ~ 10290846 (+)
G222910 NA non-coding upstream 17219 10289421 ~ 10289629 (+)
G222938 NA non-coding downstream 21308 10335843 ~ 10336320 (+)
G222939 NA non-coding downstream 21848 10336383 ~ 10336717 (+)
G222940 NA non-coding downstream 22834 10337369 ~ 10337761 (+)
G223226 NA non-coding downstream 77502 10392037 ~ 10392260 (+)
G223228 NA non-coding downstream 78844 10393379 ~ 10393580 (+)
sphk2 LOC106605743 other upstream 393750 9900809 ~ 9916529 (+)
G222353 LOC106573525 other upstream 625096 9679760 ~ 9681752 (+)
G222345 LOC106594812 other upstream 695709 9606305 ~ 9611139 (+)
LOC110520820 LOC107573682 other upstream 800062 9490333 ~ 9508263 (+)
G223418 u2af2 other downstream 539167 10853702 ~ 10856200 (+)
LOC110508993 LOC106576906 other downstream 562222 10876757 ~ 10878635 (+)
G223434 LOC106595748 other downstream 635614 10950149 ~ 10952739 (+)
LOC110508886 LOC106605776 other downstream 751 10306848 ~ 10314535 (+)

Expression


Co-expression Network