LOC110520829 (LOC102782376)


Basic Information

Item Value
gene id LOC110520829
gene name LOC102782376
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10431758 ~ 10605056 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963819.1
CAATAAGAGGGTTGAGTGGTTCTAGTAAATATTTATATTGCATTATGATAGCCAAAGcgtgagagtgaaagagagagaggcagagagggagagttatAGAGCGACCACCCCTTTATTAATATTATTCCACACCGCTAAGTTTAGCATTCAACACGTGTCGccagtgatggagagagagagtgagggagggatagagagagaggttgatggtTGCTAGGTGACCAGGCGCATATACTGAATTTTAACAAAagaacagggaaagagagagagagagagaaagagagagaggggagagagggagggagagaggtagagagagagatctaaaAATTGAATACATGTAGAATATATATTTAGATATATATTTTCAGGGGGGAAACACGCAAACGGATACCTCAAAAGGGAAGGATGTGAAAAGAATGGAGGGACGAAGGGAGCGAGGGGGGAAAGGCTcatgaaaaacagCACCCTCTCTTAGAGCGCTTTACAGCTTcgccctccccccacccccctccgcccccctcccccctccacggTTGATTGATCTATTGCAATGGTCGCCatacccaccctctctctcctattggcCCTGGCGGAGTGGGCAGGACCAGTCACGCCCTCCCCACACCTCTTGCTCCGCCCccgggagcgggagagagacccGGGGACAATAATGAACTTCAACATCGCTGTGATCCACGCGGGGGCCAGCGTGCAGGTAGAGGCGGCGGCCGGGCCCGGGGGAAGGGTGCTCTACCCTGGGTTTGGTCGGGCACACAGCTCCCTGGGGGAGAGCGTGATCACCCAGTGGGGCTCTGCTAACGTCATCTGGCTCCAGGTGAATGACAGTAGTCCTAAGACTCTGCTGTCCCAACTGTGTGACCTGCTGGCAGCGAGGCCCCTACAGGGCCTGGTCTACGAGGAGGAGAGGCCACCACCCACCGCCTGGGGACCCCTGGCCCCCATGTTAGAGTTTGTCTCTGCCCAGACTGGACTACCCATAGTGGctgtaggaggaggagcagggcTGGGGAGGATGCAACAGGAGTCAGGCTCCATCTTCCTCCAGTTCAGCTCATCCACCAGCCTCCAGCTGGAGGTCATCTTCAAAATACTAGAGGAGTACGACTGGACCACCTTCTCAGTGGTGTCCACCCGTCACCATGGCTACCAGGACTTCCTGTCGGTGGTGGACGGCCTGACGGACGGCTCGTTCATCGGCTGGGAGAAGAAGAGCGTGGTCATGCTGAACGTGACGGACGACCCGGGAGGGGCACGCACGCGCAGGCTGCTCAAGGAGAACGAGGCGCAGGTACGTCTGCTCTACTGTTCCCAGGAGGAGGCCGAGCTGGTGTTTAAAGCAGCCTGGGCCGCGGGTCAGGCTGGACCCTCTCACATGTGGTTCGCTGTGGGGCCAGCCCTGTCCGGCCTTGGCATGGAGGGTCTCCCCAGGGCCCTGTTCGCCGTGCGTCCGCAGGGCTGGAAGGACAAGCCCCGCATGAGGATCGCCCGGGGCGTGTCCATACTGACCCACGGGGCGGTGGCACTGCGCCGCGACTATGGGGCCTCCGGAGGGCCAAACTTTGTCACCAACTGCATGACGGAATCCAATCAAACACACAGGGTGCGGGGCAGGAtgagGTATTTCAGCAACATCACGTTGGGTGGCAGAGACTACTCTTTCGACAGTGACGGTTACCTGGCCAACCCCGTCCTAGAAGTAATCTCCTATACACCTGGCAAAGGCTGGGAGGATGTAGGGATGTGGGAAAATGGTAAGTTGGATTTGGTTTATCCAGCGTGGTCGCGTTACGGTCCATTCCTCCAACCGCCTGATGGCGCCCAGCACCTGCGCGTGGTCACTCTGGAGGAACGTCCGTTTGTCATCGTGGAGCTGGCTGACGCCGCCTCCAACACCTGCATCAGAGACTCTGTACCCTGCCGACGACCCCTGAACGCCAGTATTCCTGTCCAGGATCCCCCAAAGAAACAGTGCTGTAAGGGCTTCTGCATCGACATCCTCAAACGATTGGCCAAAATCGTGGGTTTCACCTATGACCTCTACCTGGTGACCAATGGAAAGCACGGGAAGAAGATTGATGGAGTGTGGAACGGCATGATTGGAGAGGTGGTGGGACAGCGAGCAGATATGGCCATCGGATCCCTCACCATCAACGAGGAGAGGTCAGAGGTCGTGGACTTTTCCGTCCCCTTCGTGGAGACGGGCATCAGCGTCATGGTCTCCCGTAGCAACGGAACCGTCTCACCCTCTGCCTTCCTGGagcCCTACAGTCCAGCGGTGTGGGTGATGATGTTCGTCATGTGCCTGACCGTGGTGGCTGTGACCGTCTTCATATTTGAGTTCTTCAGTCCAGTCGGCTACAACCGCAGCCTTTCCAGCGGAAAGAagGCAGGAGGCTCTACATTCACCATAGGAAAGTCTGTGTGGTTGCTGTGGGCCATTGTGTTCAATAACTCAGTCCCAGTGGAGAACCCCAGAGGAACCACCAGTAAGATCATGGTGCTGATCTGGGCCTTCTTCGCGGTCATCTTCCTGGCTTCCTACACAGCCAACCTGGCTGCCTTCATGATCCAGGAGGAGTACATAGACACTGTCTCTGGACTCTCAGACAAAAAGTTCCAGCACCCCACAGAGCAGTACCCCCCTCTGAAGTTTGGCACGGTGCCCAATGGAAGTACAGAGAAGAACATCCGCAGTAACTACCCTGGCATGCACCATTACATGGTCAAATATAaccagagaggggtggaggacgCCATTAACAACCTCAAGACTggGAAGTTGGATGCCTTTATCTACGATGCAGCTGTGTTGAACTACATGGCCAGGAAAGACGAGGGTTGTAAGGTGATGACCATAGGCTCTGGGAAGGTATTTGCCACCACAGGCTACGGTATCGCCCTGCACAAGAACTCCCGCTGGAAACGCCCCCTCGACCTGGCCCTGCTGCAGCTGGTGGGAGACgATGAGATTGAGATGCTGGAGCGTCTGTGGCTGTCTGGTATCTGTCACAATGATAAGATTGAGGTGATGAGCAGTAAGCTGGACATAGACAACATGGCAGGTGTCTTCTACATGTTGCTGGTGGCTATGGGGCTCAGTCTGCTGGTATTTGCCTGGGAGCACCTGGTCTACTGGAGGCTCAGACACTGCATGGCTACCAGCTCCGGGAGACTGGACTTCCTACTGGCCATCAGTAGGgGCATGTACAGTTGTTGTAGCTTTGAGGATGAAACCACGCCGGGCGGGGCCAAATCCTCCATGGCTATGCTCCCCCACCATCATGGCACCATGGTAACAGTCCCGCCCCCGCCACACTTGGTCAGTGCGTCGTCAACCAACCCGGCCCTGACCATGGCGCAGCAGCAACAGTCACAGCCCGTCTACAAAACACAGATGCCTGGATCCCCTCCCACCGTGGTGCATTCTGGGACGGCGCTGGGGCCCTCCAACACTCCCATGCTGGGGGCGCCCCTGCCTTGCTCCACATTCCTCCCCCGGCCTGATCGCAGACTGGCCGTGGTGGACCGCTGGAGGCTGCCCAAGGCCGGGACCGCCACCAACCCCATGGCCGTCCGCGGGGCCGTCGCAGACATGGGGCCCTTCCCCCAGAAAGTGGCTCCAACCTGGGGCACGACAGCTGGAGGAGTgggggttggtggtggtggtggtggtggggggctgGATGGATATAAACGCTACTATGGACCCATCGACCCTGAGGGTCTGGGGCCCTGTATGGACCAGCCTGCAGGGTCCCAGACCCCCAAAACAGCCCCCAGGAGCCACCCTCAACCCCCTCCCGCCACTGTGGCCTTCTACTCAGAGAAAGGTCCTGACCAGGGGGTGGGGAAGAGGGTGGTGGGAGGTGGTGGTGCTGGGTgtcaggggaagggaggggtcaAACCTTTGGGGACGCCTCGGCTGCCTCCTAAAAGCCAAGCCGTGGGCGTGACCCCAGTCCCTCTGCCCACTAACCCCCCGCTGCCACaaccctccccccctctcccctcatcctttTGGAGGAAGCGCCGGCCCAAGAAGCCCAAAGAGCCAGGCGGGCCTCTGTACGAGAACATCCTACCGCTGGGGcgcaggggaggaggaagggatggagcgagggatggtggagggaggaggggacgccccctctctcctcctctcccactctcagTAACCGTGCCCATGTCCCCCACCTacactcccccttccccctccaccTCACTCCCCTACACCAGCTcaacttcctcctcttcctctaacaCATCGtccacctcttcctctacctcctcctctcgctcctcctctccttcctcctcctcctccttgaccTCTCAGAGCACGCGGGAAGGTTTGGACGCAGAGGAcgatgatgaggatgaggagcTGACCGAGGAGTCCAGTCTTCtcctggggagggggagggacagacagcgttcaattaTCTCCTCTCGCTCCCTCAGTCATGGGCGCCAGCCACCACCTATACCACCCCGAAAACCACGCCCTGCCCgaggggagagaaacagggagagggagagggagagaggaggtagccAGTTGGCCCAGTTACAGGAGTGGTGGGCGGGCtggggtgatagagagagggatcgcagtggaggaggagatgacGAGAGGAAacgagagaagaagaggaggaaagataaagagaagaagaaaaagaagaagaagaggaaaaagagggaggagagggaacgagagcgagacaaagagaggaagagacggaaGGTgaaaaagaagaggaagaagaaggcgCTGAAGACGAAGAAGAGGAAGAAATCGACTGGGCGTTCCGAGCAAGAAGAGGGGGAAGTGGAGGCAgatagggagggagtgggggatggagggagagaaggagggaagcaAGACTACTCTTCCTTTCCAAACCAGTATCGTAGTACGtttggggagaaagggagagagtcagcatgggcaggagagagggagcgaggaaggagggagggagaagaggaagaggggggtgatagagaggaggatagcagCAGGAGCAGGGAGAGGCGGCCCAAATCATCCCGTTCCCACTCCAGACATCGACCCCCCAGTAAGCTCTACCCCAAACTCCCCGCCTCAGTCAAGTTCTGGGTGAGTGGAGGAAATGGGGAAGGGGGGGACCCCAACTCTGGAACacacccctcctccctgcctcccctcaTCCCACTCTCCAAGAGGCGGAGGAGTGAaggggtggagagaagggagggagggagagaaggagagaagaggcctCTGTTGATGCACTATGAGAAAGACAGGGCTAACACCCGGGAGGGGCTCTCCTTCCATGAGTGGGACTctgaggaggatgatgaggaagatgtgggggaggagaggcagagagacagagcgagggaacgggtggaggagagggtgaggagggcgGGTGGGAGAGGTGCTGTGTCAGAGTCAGAAAGAGACAGGGCGAGAGCAGAGGAGAGTTACTCTGATGAGGGCTCATCAGGGGAGTTTGGGCGATTTGAGAGGtactgggaggggagggaggggagggaggggagtgggggGGCTGGAGGACCAGGGAATAGTGGGATaggggggatagggggagggagcTGGTTTTTCGGCACATACCCCTCCAGAGAGAAAGGGGGCAGCATCAACAGCAGAGACGACTCTATACTAGGGCGAgtggagggctgggggggggtggggggagattCTTGGGGTTCAGGGCCAGGAGTAGGGTGGGCATcagggggagggagtggaggactGGGGTCCCAGTGGCCCCCTCCTCCAGCAAACCTCCCACCCCCCCGACGGTACTGGTCTGTGGACAAACTCCCAATGAAGGGAGAGAAGAAGTGGAaaaggggaggaagggggaaggGCAAGGGACGCGCACGAGACAGGAACCAGGGGTCTGGGGTGTCAGGTTCATGTAGTCAGTACCCCCACCCCCATGTGCACCCGCACCCCCAAGGGCGGTCACACGGCCATGGGAAGAGAGGAAGCACGGCCCTGTCCCACAGCCAGGAGGAGCTGCTCCCCCACTGCCACAGCTTCAGCGGGGGCTCACGGCCCAAACCCCCTCCCAAACCAGACCAGGGCCAGGCCAAGTCAGGCAGCCAGGCCAGTCTCAGCACACAGCAGCCAGGAGTGTTAGTGGACCACCCCCCTCAGCCCTCCCTCTCGCCCCCTCAACCCCAACCTAGTGtcccttcctcatcctcctccctgcCGGtgcccatccctcctcctccctcctcgtcCTCTGCCTCGGCCAGTGCTAAGCTCCTGTACCAGAGACTACGGTCAGTACCTCAGCCCGGACGCTTCTACTCCCCCCACCTGCCACTCAAGGCCAAGAGCCTATGCTCCCGACGAGGCTCCGCCCATTTCTCCAGCCTGGAGAGCGAGGTATGA

Function

NR:

description
PREDICTED: glutamate receptor ionotropic, NMDA 2D

GO: NA

KEGG:

id description
K05212 GRIN2D; glutamate receptor ionotropic, NMDA 2D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963819.1 True 6445 mRNA 0.59 16 10431758 10605056

Neighbor

gene id symbol gene type direction distance location
LOC110508924 LOC106605777 coding upstream 68085 10340929 ~ 10363673 (+)
LOC110508886 LOC106605776 coding upstream 117223 10306848 ~ 10314535 (+)
LOC110520828 NA coding upstream 125559 10295464 ~ 10306199 (+)
LOC110508875 LOC106605773 coding upstream 144669 10278141 ~ 10287089 (+)
LOC110508845 LOC106605771 coding upstream 155582 10267749 ~ 10276176 (+)
prkcg LOC105019084 coding downstream 56034 10661090 ~ 10701728 (+)
LOC110520833 LOC106575226 coding downstream 111557 10716613 ~ 10767669 (+)
cacng8b LOC106576929 coding downstream 164582 10769638 ~ 10827279 (+)
LOC110508993 LOC106576906 coding downstream 271740 10876757 ~ 10878635 (+)
LOC110509020 LOC106605819 coding downstream 308025 10913081 ~ 10925718 (+)
G223238 NA non-coding upstream 21289 10409843 ~ 10410469 (+)
G223232 NA non-coding upstream 34612 10396369 ~ 10397146 (+)
G223228 NA non-coding upstream 38178 10393379 ~ 10393580 (+)
G223226 NA non-coding upstream 39498 10392037 ~ 10392260 (+)
G222940 NA non-coding upstream 93997 10337369 ~ 10337761 (+)
G223339 NA non-coding downstream 20581 10625637 ~ 10637350 (+)
G223344 NA non-coding downstream 30549 10635605 ~ 10641319 (+)
G223349 NA non-coding downstream 44260 10649316 ~ 10649743 (+)
G223350 NA non-coding downstream 45765 10650821 ~ 10651143 (+)
sphk2 LOC106605743 other upstream 518660 9900809 ~ 9916529 (+)
G222353 LOC106573525 other upstream 750006 9679760 ~ 9681752 (+)
G222345 LOC106594812 other upstream 820619 9606305 ~ 9611139 (+)
G223418 u2af2 other downstream 248646 10853702 ~ 10856200 (+)
G223434 LOC106595748 other downstream 345093 10950149 ~ 10952739 (+)

Expression


Co-expression Network